Wall clock time and date at job start Mon Mar 30 2020 06:32:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30857 * 1 3 3 Si 1.86801 * 119.99736 * 2 1 4 4 H 1.48500 * 109.47174 * 274.98563 * 3 2 1 5 5 H 1.48500 * 109.47493 * 34.98941 * 3 2 1 6 6 H 1.48504 * 109.46903 * 154.99139 * 3 2 1 7 7 C 1.40071 * 119.99749 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99512 * 186.29853 * 7 2 1 9 9 C 1.40059 * 120.00138 * 6.29757 * 7 2 1 10 10 C 1.39618 * 127.05801 * 173.13766 * 9 7 2 11 11 N 1.33023 * 107.46503 * 180.02562 * 10 9 7 12 12 C 1.31017 * 109.97553 * 359.97438 * 11 10 9 13 13 C 1.50696 * 125.17350 * 179.97438 * 12 11 10 14 14 C 1.50693 * 109.47530 * 305.03083 * 13 12 11 15 15 C 1.38269 * 119.99466 * 89.99823 * 14 13 12 16 16 C 1.38219 * 120.02823 * 179.97438 * 15 14 13 17 17 C 1.38241 * 120.01190 * 0.02562 * 16 15 14 18 18 C 1.38334 * 119.98685 * 0.02562 * 17 16 15 19 19 Cl 1.73599 * 120.01225 * 179.97438 * 18 17 16 20 20 C 1.38201 * 119.99524 * 269.72220 * 14 13 12 21 21 N 1.35078 * 109.64845 * 0.23137 * 12 11 10 22 22 H 0.96999 * 126.48495 * 179.74734 * 21 12 11 23 23 H 0.97002 * 120.00020 * 359.97438 * 1 2 3 24 24 H 1.08006 * 126.27095 * 0.05464 * 10 9 7 25 25 H 1.09007 * 109.46756 * 185.02996 * 13 12 11 26 26 H 1.08999 * 109.46782 * 65.03711 * 13 12 11 27 27 H 1.08001 * 119.98488 * 359.97438 * 15 14 13 28 28 H 1.07997 * 119.99045 * 180.02562 * 16 15 14 29 29 H 1.08003 * 120.00420 * 179.97438 * 17 16 15 30 30 H 1.07995 * 120.00039 * 0.02562 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2425 1.6178 0.0000 4 1 2.3846 2.1073 -1.3948 5 1 1.4967 2.6200 0.8028 6 1 3.5889 1.4121 0.5919 7 6 2.0089 -1.2131 -0.0005 8 1 3.0840 -1.2159 0.1021 9 6 1.3149 -2.4223 -0.1341 10 6 1.8658 -3.6962 -0.2863 11 7 0.8573 -4.5589 -0.3776 12 6 -0.2849 -3.9227 -0.2937 13 6 -1.6450 -4.5686 -0.3573 14 6 -1.7572 -5.3800 -1.6221 15 6 -1.3805 -6.7104 -1.6255 16 6 -1.4836 -7.4555 -2.7851 17 6 -1.9630 -6.8707 -3.9424 18 6 -2.3389 -5.5395 -3.9399 19 17 -2.9403 -4.8043 -5.3930 20 6 -2.2419 -4.7959 -2.7770 21 7 -0.0580 -2.5992 -0.1472 22 1 -0.7299 -1.9044 -0.0652 23 1 -0.4850 0.8401 0.0004 24 1 2.9180 -3.9371 -0.3227 25 1 -2.4144 -3.7965 -0.3515 26 1 -1.7782 -5.2207 0.5059 27 1 -1.0056 -7.1676 -0.7217 28 1 -1.1897 -8.4947 -2.7870 29 1 -2.0431 -7.4529 -4.8486 30 1 -2.5398 -3.7579 -2.7731 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076026000.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:40 Heat of formation + Delta-G solvation = 43.909808 kcal Electronic energy + Delta-G solvation = -16373.375791 eV Core-core repulsion = 13579.960778 eV Total energy + Delta-G solvation = -2793.415013 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.057 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.00299 -38.93728 -36.31779 -33.88262 -32.75669 -30.51874 -30.37297 -29.11470 -26.96718 -23.94143 -22.41870 -21.40798 -19.89597 -18.74928 -17.83174 -16.65224 -15.45283 -15.30865 -15.19803 -14.73427 -13.66031 -13.57398 -13.28003 -13.04840 -12.67118 -12.40466 -11.99735 -11.64957 -11.58222 -11.38529 -11.25309 -11.12700 -10.99703 -10.76181 -10.62014 -10.35435 -9.51925 -8.65160 -8.40015 -8.37563 -8.24885 -7.10400 -6.99459 -4.37014 1.44095 1.52557 2.29954 2.87721 3.01950 3.06912 3.67777 3.85726 3.89785 4.43182 4.92124 5.04228 5.11870 5.28767 5.36788 5.52975 5.59328 5.67130 5.96171 6.06391 6.11658 6.26839 6.44083 6.57899 6.85160 6.91068 7.06036 7.14667 7.25633 7.71062 7.82873 8.46930 8.66086 8.75572 9.45188 9.83239 10.09834 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.024124 B = 0.005087 C = 0.004510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.399626 B = 5503.286791 C = 6207.422662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.850 5.850 2 C 0.066 3.934 3 Si 0.930 3.070 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.261 1.261 7 C -0.439 4.439 8 H 0.094 0.906 9 C 0.200 3.800 10 C -0.181 4.181 11 N -0.468 5.468 12 C 0.075 3.925 13 C 0.025 3.975 14 C -0.040 4.040 15 C -0.091 4.091 16 C -0.111 4.111 17 C -0.124 4.124 18 C -0.034 4.034 19 Cl -0.085 7.085 20 C -0.106 4.106 21 N -0.562 5.562 22 H 0.421 0.579 23 H 0.285 0.715 24 H 0.139 0.861 25 H 0.073 0.927 26 H 0.079 0.921 27 H 0.129 0.871 28 H 0.127 0.873 29 H 0.126 0.874 30 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.643 -6.715 -4.409 10.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.482 5.482 2 C -0.147 4.147 3 Si 0.755 3.245 4 H -0.196 1.196 5 H -0.203 1.203 6 H -0.185 1.185 7 C -0.475 4.475 8 H 0.112 0.888 9 C 0.082 3.918 10 C -0.330 4.330 11 N -0.187 5.187 12 C -0.180 4.180 13 C -0.014 4.014 14 C -0.041 4.041 15 C -0.109 4.109 16 C -0.129 4.129 17 C -0.143 4.143 18 C -0.061 4.061 19 Cl -0.056 7.056 20 C -0.125 4.125 21 N -0.177 5.177 22 H 0.266 0.734 23 H 0.096 0.904 24 H 0.157 0.843 25 H 0.092 0.908 26 H 0.098 0.902 27 H 0.147 0.853 28 H 0.145 0.855 29 H 0.144 0.856 30 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -6.816 -7.428 -4.636 11.096 hybrid contribution 0.042 2.172 -0.124 2.176 sum -6.774 -5.256 -4.760 9.807 Atomic orbital electron populations 1.68949 1.07767 1.29828 1.41691 1.25933 0.94874 1.01823 0.92052 0.85920 0.80100 0.79540 0.78968 1.19551 1.20334 1.18476 1.18782 0.95327 0.88272 1.45114 0.88824 1.18939 0.81495 0.94923 0.96455 1.22113 0.96493 0.88915 1.25481 1.69147 0.97430 1.34870 1.17302 1.21652 0.94293 0.82294 1.19795 1.18534 0.91566 0.97118 0.94165 1.19770 0.95454 0.93903 0.94961 1.21132 0.97528 0.93627 0.98646 1.21038 0.99548 1.00016 0.92312 1.20914 1.01147 0.93101 0.99117 1.20816 1.03560 0.93953 0.87735 1.98342 1.86765 1.83242 1.37232 1.20929 1.00599 0.99910 0.91032 1.43517 1.08361 1.07443 1.58376 0.73387 0.90351 0.84328 0.90814 0.90220 0.85264 0.85484 0.85618 0.85404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -20.83 10.83 55.56 0.60 -20.23 16 2 C 0.07 1.61 5.49 -17.28 -0.09 1.51 16 3 Si 0.93 18.48 29.57 -169.99 -5.03 13.45 16 4 H -0.27 -5.37 7.11 56.52 0.40 -4.96 16 5 H -0.28 -5.41 7.11 56.52 0.40 -5.01 16 6 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 7 C -0.44 -11.47 9.36 -38.21 -0.36 -11.83 16 8 H 0.09 2.33 7.86 -52.49 -0.41 1.92 16 9 C 0.20 5.39 6.74 -83.68 -0.56 4.83 16 10 C -0.18 -4.76 11.98 -16.52 -0.20 -4.95 16 11 N -0.47 -11.81 11.12 -9.76 -0.11 -11.92 16 12 C 0.08 1.75 7.38 -154.95 -1.14 0.61 16 13 C 0.03 0.45 5.97 -29.04 -0.17 0.28 16 14 C -0.04 -0.67 5.07 -104.63 -0.53 -1.20 16 15 C -0.09 -1.40 9.70 -39.58 -0.38 -1.78 16 16 C -0.11 -1.49 10.05 -39.59 -0.40 -1.89 16 17 C -0.12 -1.70 9.83 -39.55 -0.39 -2.09 16 18 C -0.03 -0.52 6.32 -39.50 -0.25 -0.77 16 19 Cl -0.08 -1.19 28.96 -51.86 -1.50 -2.69 16 20 C -0.11 -1.75 9.49 -39.55 -0.38 -2.13 16 21 N -0.56 -14.11 5.82 -7.86 -0.05 -14.15 16 22 H 0.42 10.31 6.49 -40.82 -0.26 10.05 16 23 H 0.29 6.40 8.30 -40.82 -0.34 6.06 16 24 H 0.14 3.40 8.06 -52.48 -0.42 2.98 16 25 H 0.07 1.19 8.08 -51.93 -0.42 0.77 16 26 H 0.08 1.29 8.09 -51.93 -0.42 0.87 16 27 H 0.13 1.87 8.06 -52.49 -0.42 1.45 16 28 H 0.13 1.34 8.06 -52.49 -0.42 0.91 16 29 H 0.13 1.43 8.06 -52.48 -0.42 1.00 16 30 H 0.13 2.09 8.06 -52.49 -0.42 1.66 16 LS Contribution 284.08 15.07 4.28 4.28 Total: -1.00 -28.26 284.08 -9.42 -37.68 By element: Atomic # 1 Polarization: 15.76 SS G_CDS: -2.77 Total: 12.99 kcal Atomic # 6 Polarization: -14.56 SS G_CDS: -4.86 Total: -19.42 kcal Atomic # 7 Polarization: -46.75 SS G_CDS: 0.45 Total: -46.30 kcal Atomic # 14 Polarization: 18.48 SS G_CDS: -5.03 Total: 13.45 kcal Atomic # 17 Polarization: -1.19 SS G_CDS: -1.50 Total: -2.69 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -28.26 -9.42 -37.68 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076026000.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.591 kcal (2) G-P(sol) polarization free energy of solvation -28.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.681 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds