Wall clock time and date at job start Mon Mar 30 2020 06:32:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30857 * 1 3 3 Si 1.86801 * 119.99736 * 2 1 4 4 H 1.48500 * 109.47174 * 274.98563 * 3 2 1 5 5 H 1.48500 * 109.47493 * 34.98941 * 3 2 1 6 6 H 1.48504 * 109.46903 * 154.99139 * 3 2 1 7 7 C 1.40071 * 119.99749 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99512 * 186.29853 * 7 2 1 9 9 C 1.40059 * 120.00138 * 6.29757 * 7 2 1 10 10 C 1.39618 * 127.05801 * 173.13766 * 9 7 2 11 11 N 1.33023 * 107.46503 * 180.02562 * 10 9 7 12 12 C 1.31017 * 109.97553 * 359.97438 * 11 10 9 13 13 C 1.50696 * 125.17350 * 179.97438 * 12 11 10 14 14 C 1.50693 * 109.47530 * 305.03083 * 13 12 11 15 15 C 1.38269 * 119.99466 * 89.99823 * 14 13 12 16 16 C 1.38219 * 120.02823 * 179.97438 * 15 14 13 17 17 C 1.38241 * 120.01190 * 0.02562 * 16 15 14 18 18 C 1.38334 * 119.98685 * 0.02562 * 17 16 15 19 19 Cl 1.73599 * 120.01225 * 179.97438 * 18 17 16 20 20 C 1.38201 * 119.99524 * 269.72220 * 14 13 12 21 21 N 1.35078 * 109.64845 * 0.23137 * 12 11 10 22 22 H 0.96999 * 126.48495 * 179.74734 * 21 12 11 23 23 H 0.97002 * 120.00020 * 359.97438 * 1 2 3 24 24 H 1.08006 * 126.27095 * 0.05464 * 10 9 7 25 25 H 1.09007 * 109.46756 * 185.02996 * 13 12 11 26 26 H 1.08999 * 109.46782 * 65.03711 * 13 12 11 27 27 H 1.08001 * 119.98488 * 359.97438 * 15 14 13 28 28 H 1.07997 * 119.99045 * 180.02562 * 16 15 14 29 29 H 1.08003 * 120.00420 * 179.97438 * 17 16 15 30 30 H 1.07995 * 120.00039 * 0.02562 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2425 1.6178 0.0000 4 1 2.3846 2.1073 -1.3948 5 1 1.4967 2.6200 0.8028 6 1 3.5889 1.4121 0.5919 7 6 2.0089 -1.2131 -0.0005 8 1 3.0840 -1.2159 0.1021 9 6 1.3149 -2.4223 -0.1341 10 6 1.8658 -3.6962 -0.2863 11 7 0.8573 -4.5589 -0.3776 12 6 -0.2849 -3.9227 -0.2937 13 6 -1.6450 -4.5686 -0.3573 14 6 -1.7572 -5.3800 -1.6221 15 6 -1.3805 -6.7104 -1.6255 16 6 -1.4836 -7.4555 -2.7851 17 6 -1.9630 -6.8707 -3.9424 18 6 -2.3389 -5.5395 -3.9399 19 17 -2.9403 -4.8043 -5.3930 20 6 -2.2419 -4.7959 -2.7770 21 7 -0.0580 -2.5992 -0.1472 22 1 -0.7299 -1.9044 -0.0652 23 1 -0.4850 0.8401 0.0004 24 1 2.9180 -3.9371 -0.3227 25 1 -2.4144 -3.7965 -0.3515 26 1 -1.7782 -5.2207 0.5059 27 1 -1.0056 -7.1676 -0.7217 28 1 -1.1897 -8.4947 -2.7870 29 1 -2.0431 -7.4529 -4.8486 30 1 -2.5398 -3.7579 -2.7731 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076026000.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:40 Heat of formation + Delta-G solvation = 29.682505 kcal Electronic energy + Delta-G solvation = -16373.992733 eV Core-core repulsion = 13579.960778 eV Total energy + Delta-G solvation = -2794.031955 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.057 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.86075 -40.16292 -37.45751 -35.72506 -34.14092 -32.35792 -31.63546 -30.85167 -28.51529 -25.74029 -23.57762 -22.70950 -21.81609 -20.57520 -19.71949 -17.86759 -17.24322 -16.62660 -16.46252 -16.27948 -15.30603 -14.87684 -14.69903 -14.55123 -14.17816 -13.99001 -13.63381 -13.40600 -13.15163 -12.97434 -12.67810 -12.38876 -12.26758 -12.22709 -12.00440 -11.76362 -11.31416 -10.34133 -10.21767 -9.82537 -9.57004 -9.06250 -8.83926 -6.32827 0.26706 0.35400 1.15402 1.24751 1.39800 1.54129 1.88045 2.19057 2.52891 2.71692 3.18209 3.31203 3.79786 3.93967 4.12980 4.19037 4.37844 4.42745 4.55968 4.73384 4.89167 4.96597 5.06872 5.25476 5.28527 5.29415 5.43907 5.65635 5.78616 5.88339 5.92443 6.50911 6.71918 6.82051 7.53243 7.88713 8.26606 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.024124 B = 0.005087 C = 0.004510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.399626 B = 5503.286791 C = 6207.422662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.028 3.972 3 Si 1.004 2.996 4 H -0.267 1.267 5 H -0.267 1.267 6 H -0.257 1.257 7 C -0.475 4.475 8 H 0.094 0.906 9 C 0.170 3.830 10 C -0.214 4.214 11 N -0.484 5.484 12 C 0.090 3.910 13 C 0.026 3.974 14 C -0.059 4.059 15 C -0.100 4.100 16 C -0.104 4.104 17 C -0.119 4.119 18 C -0.046 4.046 19 Cl -0.077 7.077 20 C -0.123 4.123 21 N -0.569 5.569 22 H 0.420 0.580 23 H 0.296 0.704 24 H 0.143 0.857 25 H 0.087 0.913 26 H 0.099 0.901 27 H 0.136 0.864 28 H 0.162 0.838 29 H 0.153 0.847 30 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.183 -6.949 -5.003 11.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C -0.182 4.182 3 Si 0.824 3.176 4 H -0.192 1.192 5 H -0.191 1.191 6 H -0.181 1.181 7 C -0.510 4.510 8 H 0.112 0.888 9 C 0.052 3.948 10 C -0.361 4.361 11 N -0.204 5.204 12 C -0.168 4.168 13 C -0.013 4.013 14 C -0.060 4.060 15 C -0.118 4.118 16 C -0.122 4.122 17 C -0.138 4.138 18 C -0.072 4.072 19 Cl -0.049 7.049 20 C -0.142 4.142 21 N -0.185 5.185 22 H 0.266 0.734 23 H 0.107 0.893 24 H 0.160 0.840 25 H 0.105 0.895 26 H 0.118 0.882 27 H 0.154 0.846 28 H 0.180 0.820 29 H 0.171 0.829 30 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -7.349 -7.676 -5.228 11.843 hybrid contribution 0.104 2.168 0.020 2.171 sum -7.245 -5.508 -5.208 10.486 Atomic orbital electron populations 1.68967 1.08856 1.31305 1.40742 1.26829 0.95762 1.04852 0.90798 0.84827 0.78814 0.74861 0.79070 1.19181 1.19136 1.18070 1.19051 0.95697 0.89200 1.47089 0.88794 1.19310 0.82467 0.95581 0.97434 1.22313 0.97182 0.89391 1.27232 1.69154 0.97796 1.34858 1.18592 1.22701 0.95976 0.81752 1.16349 1.18702 0.88830 0.97840 0.95932 1.19695 0.97223 0.94675 0.94427 1.21339 0.97403 0.93250 0.99851 1.21426 0.98073 1.01432 0.91267 1.21295 0.99647 0.92543 1.00299 1.20979 1.03844 0.94705 0.87673 1.98342 1.86671 1.83297 1.36555 1.20967 1.01536 0.99894 0.91765 1.43625 1.07875 1.08209 1.58768 0.73386 0.89326 0.83963 0.89458 0.88246 0.84650 0.82050 0.82913 0.86163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -42.38 10.83 21.86 0.24 -42.14 16 2 C 0.03 1.38 5.49 85.28 0.47 1.85 16 3 Si 1.00 37.28 29.57 68.60 2.03 39.31 16 4 H -0.27 -9.74 7.11 99.48 0.71 -9.03 16 5 H -0.27 -9.37 7.11 99.48 0.71 -8.66 16 6 H -0.26 -9.32 7.11 99.48 0.71 -8.61 16 7 C -0.48 -25.36 9.36 23.16 0.22 -25.15 16 8 H 0.09 4.81 7.86 -2.91 -0.02 4.78 16 9 C 0.17 9.42 6.74 38.88 0.26 9.68 16 10 C -0.21 -11.61 11.98 84.85 1.02 -10.59 16 11 N -0.48 -24.76 11.12 -184.80 -2.05 -26.82 16 12 C 0.09 4.22 7.38 137.96 1.02 5.24 16 13 C 0.03 0.91 5.97 29.10 0.17 1.08 16 14 C -0.06 -1.95 5.07 -19.87 -0.10 -2.05 16 15 C -0.10 -2.91 9.70 22.27 0.22 -2.69 16 16 C -0.10 -2.49 10.05 22.27 0.22 -2.27 16 17 C -0.12 -2.94 9.83 22.29 0.22 -2.72 16 18 C -0.05 -1.32 6.32 22.32 0.14 -1.18 16 19 Cl -0.08 -2.07 28.96 -2.72 -0.08 -2.15 16 20 C -0.12 -4.00 9.49 22.29 0.21 -3.79 16 21 N -0.57 -29.11 5.82 -178.78 -1.04 -30.15 16 22 H 0.42 20.95 6.49 -92.71 -0.60 20.35 16 23 H 0.30 13.01 8.30 -92.71 -0.77 12.24 16 24 H 0.14 7.29 8.06 -2.91 -0.02 7.26 16 25 H 0.09 2.78 8.08 -2.38 -0.02 2.76 16 26 H 0.10 3.09 8.09 -2.39 -0.02 3.07 16 27 H 0.14 3.69 8.06 -2.91 -0.02 3.66 16 28 H 0.16 2.72 8.06 -2.91 -0.02 2.70 16 29 H 0.15 2.90 8.06 -2.91 -0.02 2.88 16 30 H 0.12 3.97 8.06 -2.91 -0.02 3.94 16 Total: -1.00 -60.91 284.08 3.73 -57.18 By element: Atomic # 1 Polarization: 36.78 SS G_CDS: 0.57 Total: 37.35 kcal Atomic # 6 Polarization: -36.65 SS G_CDS: 4.07 Total: -32.59 kcal Atomic # 7 Polarization: -96.25 SS G_CDS: -2.86 Total: -99.11 kcal Atomic # 14 Polarization: 37.28 SS G_CDS: 2.03 Total: 39.31 kcal Atomic # 17 Polarization: -2.07 SS G_CDS: -0.08 Total: -2.15 kcal Total: -60.91 3.73 -57.18 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076026000.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.864 kcal (2) G-P(sol) polarization free energy of solvation -60.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.182 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds