Wall clock time and date at job start Mon Mar 30 2020 06:36:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31801 * 119.03016 * 2 1 4 4 C 1.32255 * 120.89319 * 179.97438 * 3 2 1 5 5 C 1.39284 * 119.01400 * 359.97438 * 4 3 2 6 6 N 1.39793 * 120.88003 * 180.02562 * 5 4 3 7 7 C 1.38077 * 119.99473 * 35.34400 * 6 5 4 8 8 N 1.29647 * 125.01699 * 186.33711 * 7 6 5 9 9 C 1.33706 * 115.85276 * 179.78798 * 8 7 6 10 10 C 1.41044 * 122.83641 * 180.27441 * 9 8 7 11 11 H 1.07999 * 120.00438 * 180.24576 * 10 9 8 12 12 C 1.39620 * 119.99980 * 0.23907 * 10 9 8 13 13 N 1.31082 * 120.00079 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 119.99921 * 180.02562 * 12 10 9 15 15 H 1.48510 * 109.47004 * 90.00441 * 14 12 10 16 16 H 1.48501 * 109.47186 * 210.00062 * 14 12 10 17 17 H 1.48498 * 109.47324 * 330.00771 * 14 12 10 18 18 C 1.37753 * 114.32842 * 0.49406 * 9 8 7 19 19 S 1.70965 * 108.98000 * 359.74031 * 18 9 8 20 20 C 1.39291 * 118.24615 * 0.28032 * 5 4 3 21 21 N 1.31797 * 119.02886 * 179.97438 * 2 1 3 22 22 H 1.09008 * 109.46936 * 90.00908 * 1 2 3 23 23 H 1.09000 * 109.47158 * 210.00167 * 1 2 3 24 24 H 1.08999 * 109.47407 * 330.00625 * 1 2 3 25 25 H 1.08005 * 120.49195 * 179.97438 * 4 3 2 26 26 H 0.96992 * 120.00074 * 215.62509 * 6 5 4 27 27 H 0.96993 * 120.00346 * 179.97438 * 13 12 10 28 28 H 1.07998 * 125.51238 * 179.77014 * 18 9 8 29 29 H 1.08006 * 120.49153 * 179.72376 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1466 1.1524 0.0000 4 6 3.4684 1.1954 0.0005 5 6 4.1832 0.0000 0.0016 6 7 5.5812 -0.0001 0.0027 7 6 6.2710 0.9756 0.6946 8 7 7.5569 1.1386 0.6675 9 6 8.0325 2.1468 1.4056 10 6 9.4059 2.4595 1.4789 11 1 9.7404 3.2824 2.0932 12 6 10.3330 1.7053 0.7572 13 7 9.9271 0.7068 0.0112 14 14 12.1520 2.1190 0.8548 15 1 12.7735 1.3587 1.9689 16 1 12.8124 1.7521 -0.4237 17 1 12.3163 3.5748 1.0969 18 6 7.0684 2.8514 2.0924 19 16 5.5357 2.1763 1.7487 20 6 3.4684 -1.1955 -0.0039 21 7 2.1465 -1.1524 0.0005 22 1 -0.3633 -0.0002 -1.0277 23 1 -0.3633 -0.8900 0.5139 24 1 -0.3634 0.8900 0.5137 25 1 3.9859 2.1434 0.0001 26 1 6.0665 -0.6831 -0.4859 27 1 10.5711 0.1830 -0.4904 28 1 7.2510 3.6944 2.7423 29 1 3.9860 -2.1435 -0.0078 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076027970.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:53 Heat of formation + Delta-G solvation = 94.171957 kcal Electronic energy + Delta-G solvation = -16342.356971 eV Core-core repulsion = 13585.457946 eV Total energy + Delta-G solvation = -2756.899025 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.058 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.98890 -38.13085 -36.08916 -33.60856 -33.19851 -31.72932 -29.01527 -27.08228 -25.65096 -24.82288 -22.97939 -21.80421 -19.70721 -18.35737 -17.45740 -16.66948 -16.19592 -15.86147 -15.21148 -15.07397 -14.47919 -13.66793 -13.55583 -13.18295 -13.13204 -12.61445 -12.36930 -11.72984 -11.63005 -11.39498 -11.33229 -10.90612 -10.80799 -10.70047 -10.49399 -9.75787 -9.37827 -9.15974 -8.59712 -8.23940 -7.89992 -6.82330 -6.62031 -4.44407 0.95253 1.14320 2.29551 2.39552 3.01768 3.05890 3.10024 3.26653 3.66148 3.84306 3.95816 4.12925 4.23383 4.30244 4.59417 5.01344 5.26455 5.43480 5.52918 5.54185 5.80816 5.96730 6.22281 6.44032 6.88196 7.08660 7.12545 7.23994 7.48692 7.68848 8.13890 8.20672 8.47719 8.80532 9.48602 10.25467 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.049344 B = 0.004764 C = 0.004426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.305882 B = 5875.734013 C = 6325.001066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.267 3.733 3 N -0.485 5.485 4 C 0.114 3.886 5 C 0.084 3.916 6 N -0.626 5.626 7 C 0.278 3.722 8 N -0.439 5.439 9 C 0.255 3.745 10 C -0.428 4.428 11 H 0.087 0.913 12 C 0.071 3.929 13 N -0.751 5.751 14 Si 0.913 3.087 15 H -0.269 1.269 16 H -0.277 1.277 17 H -0.261 1.261 18 C -0.487 4.487 19 S -0.010 6.010 20 C 0.111 3.889 21 N -0.493 5.493 22 H 0.079 0.921 23 H 0.081 0.919 24 H 0.082 0.918 25 H 0.178 0.822 26 H 0.420 0.580 27 H 0.273 0.727 28 H 0.140 0.860 29 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.308 -3.356 -1.902 11.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.001 4.001 3 N -0.199 5.199 4 C -0.058 4.058 5 C -0.022 4.022 6 N -0.257 5.257 7 C -0.095 4.095 8 N -0.160 5.160 9 C 0.133 3.867 10 C -0.462 4.462 11 H 0.105 0.895 12 C -0.151 4.151 13 N -0.374 5.374 14 Si 0.738 3.262 15 H -0.194 1.194 16 H -0.202 1.202 17 H -0.185 1.185 18 C -0.625 4.625 19 S 0.232 5.768 20 C -0.061 4.061 21 N -0.206 5.206 22 H 0.098 0.902 23 H 0.099 0.901 24 H 0.101 0.899 25 H 0.195 0.805 26 H 0.259 0.741 27 H 0.084 0.916 28 H 0.158 0.842 29 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -11.815 -3.565 -1.991 12.501 hybrid contribution 3.183 0.097 -0.079 3.185 sum -8.632 -3.468 -2.070 9.530 Atomic orbital electron populations 1.20435 0.85923 1.03763 1.03369 1.23072 0.98100 0.83559 0.95394 1.68199 1.08941 1.30209 1.12549 1.23491 0.89446 0.98481 0.94422 1.19510 0.84842 0.96662 1.01136 1.40647 1.01150 1.30541 1.53361 1.24621 0.91863 0.95243 0.97759 1.67549 1.05104 1.20660 1.22667 1.17632 0.94485 0.86201 0.88387 1.18952 0.88675 1.13873 1.24723 0.89494 1.26008 1.01418 0.93996 0.93715 1.70120 1.35674 1.12871 1.18760 0.86233 0.81569 0.80055 0.78393 1.19439 1.20211 1.18533 1.24991 0.92700 1.17832 1.27011 1.82731 1.13801 1.31626 1.48683 1.23000 0.89497 0.97126 0.96428 1.68127 1.08798 1.30503 1.13187 0.90198 0.90058 0.89912 0.80493 0.74088 0.91586 0.84181 0.81356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.76 10.31 36.01 0.37 -0.39 15 2 C 0.27 3.79 7.64 -157.19 -1.20 2.59 15 3 N -0.49 -7.67 10.32 -10.57 -0.11 -7.78 15 4 C 0.11 1.89 9.47 -16.98 -0.16 1.73 15 5 C 0.08 1.34 6.28 -83.45 -0.52 0.81 15 6 N -0.63 -11.11 5.49 -10.43 -0.06 -11.17 15 7 C 0.28 6.20 8.09 -88.23 -0.71 5.48 15 8 N -0.44 -11.47 8.50 -11.73 -0.10 -11.57 15 9 C 0.25 6.94 6.47 -86.16 -0.56 6.39 15 10 C -0.43 -11.55 9.22 -38.00 -0.35 -11.90 15 11 H 0.09 2.23 7.84 -52.49 -0.41 1.81 15 12 C 0.07 1.81 5.49 -17.36 -0.10 1.71 15 13 N -0.75 -19.67 11.68 55.53 0.65 -19.02 15 14 Si 0.91 18.70 29.56 -169.99 -5.02 13.68 15 15 H -0.27 -5.44 7.11 56.52 0.40 -5.04 15 16 H -0.28 -5.54 7.11 56.52 0.40 -5.14 15 17 H -0.26 -5.27 7.11 56.52 0.40 -4.87 15 18 C -0.49 -12.20 10.97 30.56 0.34 -11.87 15 19 S -0.01 -0.22 19.41 -107.50 -2.09 -2.31 15 20 C 0.11 1.54 11.26 -16.98 -0.19 1.35 15 21 N -0.49 -7.09 10.32 -10.56 -0.11 -7.20 15 22 H 0.08 0.68 8.14 -51.92 -0.42 0.26 15 23 H 0.08 0.71 8.14 -51.93 -0.42 0.29 15 24 H 0.08 0.76 8.14 -51.93 -0.42 0.33 15 25 H 0.18 3.08 5.95 -49.53 -0.29 2.79 15 26 H 0.42 6.75 8.94 -40.82 -0.37 6.39 15 27 H 0.27 6.52 8.30 -40.82 -0.34 6.18 15 28 H 0.14 3.37 8.06 -52.49 -0.42 2.95 15 29 H 0.17 1.84 8.06 -52.48 -0.42 1.42 15 LS Contribution 273.39 15.07 4.12 4.12 Total: -1.00 -29.85 273.39 -8.12 -37.97 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: -2.32 Total: 7.36 kcal Atomic # 6 Polarization: -1.00 SS G_CDS: -3.09 Total: -4.09 kcal Atomic # 7 Polarization: -57.01 SS G_CDS: 0.27 Total: -56.74 kcal Atomic # 14 Polarization: 18.70 SS G_CDS: -5.02 Total: 13.68 kcal Atomic # 16 Polarization: -0.22 SS G_CDS: -2.09 Total: -2.31 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -29.85 -8.12 -37.97 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076027970.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.145 kcal (2) G-P(sol) polarization free energy of solvation -29.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.973 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds