Wall clock time and date at job start Mon Mar 30 2020 06:36:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31801 * 119.03016 * 2 1 4 4 C 1.32255 * 120.89319 * 179.97438 * 3 2 1 5 5 C 1.39284 * 119.01400 * 359.97438 * 4 3 2 6 6 N 1.39793 * 120.88003 * 180.02562 * 5 4 3 7 7 C 1.38077 * 119.99473 * 35.34400 * 6 5 4 8 8 N 1.29647 * 125.01699 * 186.33711 * 7 6 5 9 9 C 1.33706 * 115.85276 * 179.78798 * 8 7 6 10 10 C 1.41044 * 122.83641 * 180.27441 * 9 8 7 11 11 H 1.07999 * 120.00438 * 180.24576 * 10 9 8 12 12 C 1.39620 * 119.99980 * 0.23907 * 10 9 8 13 13 N 1.31082 * 120.00079 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 119.99921 * 180.02562 * 12 10 9 15 15 H 1.48510 * 109.47004 * 90.00441 * 14 12 10 16 16 H 1.48501 * 109.47186 * 210.00062 * 14 12 10 17 17 H 1.48498 * 109.47324 * 330.00771 * 14 12 10 18 18 C 1.37753 * 114.32842 * 0.49406 * 9 8 7 19 19 S 1.70965 * 108.98000 * 359.74031 * 18 9 8 20 20 C 1.39291 * 118.24615 * 0.28032 * 5 4 3 21 21 N 1.31797 * 119.02886 * 179.97438 * 2 1 3 22 22 H 1.09008 * 109.46936 * 90.00908 * 1 2 3 23 23 H 1.09000 * 109.47158 * 210.00167 * 1 2 3 24 24 H 1.08999 * 109.47407 * 330.00625 * 1 2 3 25 25 H 1.08005 * 120.49195 * 179.97438 * 4 3 2 26 26 H 0.96992 * 120.00074 * 215.62509 * 6 5 4 27 27 H 0.96993 * 120.00346 * 179.97438 * 13 12 10 28 28 H 1.07998 * 125.51238 * 179.77014 * 18 9 8 29 29 H 1.08006 * 120.49153 * 179.72376 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1466 1.1524 0.0000 4 6 3.4684 1.1954 0.0005 5 6 4.1832 0.0000 0.0016 6 7 5.5812 -0.0001 0.0027 7 6 6.2710 0.9756 0.6946 8 7 7.5569 1.1386 0.6675 9 6 8.0325 2.1468 1.4056 10 6 9.4059 2.4595 1.4789 11 1 9.7404 3.2824 2.0932 12 6 10.3330 1.7053 0.7572 13 7 9.9271 0.7068 0.0112 14 14 12.1520 2.1190 0.8548 15 1 12.7735 1.3587 1.9689 16 1 12.8124 1.7521 -0.4237 17 1 12.3163 3.5748 1.0969 18 6 7.0684 2.8514 2.0924 19 16 5.5357 2.1763 1.7487 20 6 3.4684 -1.1955 -0.0039 21 7 2.1465 -1.1524 0.0005 22 1 -0.3633 -0.0002 -1.0277 23 1 -0.3633 -0.8900 0.5139 24 1 -0.3634 0.8900 0.5137 25 1 3.9859 2.1434 0.0001 26 1 6.0665 -0.6831 -0.4859 27 1 10.5711 0.1830 -0.4904 28 1 7.2510 3.6944 2.7423 29 1 3.9860 -2.1435 -0.0078 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076027970.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:53 Heat of formation + Delta-G solvation = 75.057934 kcal Electronic energy + Delta-G solvation = -16343.185817 eV Core-core repulsion = 13585.457946 eV Total energy + Delta-G solvation = -2757.727871 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.058 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.19988 -39.89570 -37.57877 -35.04016 -34.80258 -32.95052 -30.70266 -28.33696 -27.54528 -26.10314 -24.41125 -23.23532 -21.45910 -20.03995 -18.79975 -18.14375 -17.56393 -17.36794 -16.99734 -16.35331 -16.12168 -15.22168 -15.02754 -14.73554 -14.26862 -13.62341 -13.53910 -13.42136 -13.13065 -12.99894 -12.70075 -12.50103 -12.32723 -12.23351 -11.93130 -11.53849 -11.13866 -10.38255 -10.16461 -10.06044 -9.64467 -8.51039 -8.48390 -6.41366 -0.31267 -0.07005 0.53859 0.65573 1.38631 1.41813 1.52807 1.64901 2.00523 2.23910 2.35412 2.67020 3.07811 3.13168 3.38281 3.46116 3.76580 4.18330 4.47353 4.60898 4.80939 4.92643 4.94141 5.14701 5.24294 5.33638 5.46776 5.65726 5.95484 6.04247 6.35027 6.54626 6.87282 7.02680 7.63695 8.40798 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.049344 B = 0.004764 C = 0.004426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.305882 B = 5875.734013 C = 6325.001066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.270 3.730 3 N -0.500 5.500 4 C 0.105 3.895 5 C 0.062 3.938 6 N -0.615 5.615 7 C 0.287 3.713 8 N -0.484 5.484 9 C 0.229 3.771 10 C -0.467 4.467 11 H 0.085 0.915 12 C 0.028 3.972 13 N -0.780 5.780 14 Si 0.991 3.009 15 H -0.263 1.263 16 H -0.266 1.266 17 H -0.258 1.258 18 C -0.521 4.521 19 S 0.042 5.958 20 C 0.133 3.867 21 N -0.498 5.498 22 H 0.099 0.901 23 H 0.097 0.903 24 H 0.091 0.909 25 H 0.164 0.836 26 H 0.427 0.573 27 H 0.281 0.719 28 H 0.138 0.862 29 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.408 -4.529 -2.282 12.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.002 3.998 3 N -0.214 5.214 4 C -0.066 4.066 5 C -0.042 4.042 6 N -0.248 5.248 7 C -0.086 4.086 8 N -0.206 5.206 9 C 0.106 3.894 10 C -0.501 4.501 11 H 0.103 0.897 12 C -0.192 4.192 13 N -0.404 5.404 14 Si 0.811 3.189 15 H -0.187 1.187 16 H -0.191 1.191 17 H -0.182 1.182 18 C -0.660 4.660 19 S 0.284 5.716 20 C -0.038 4.038 21 N -0.211 5.211 22 H 0.117 0.883 23 H 0.115 0.885 24 H 0.110 0.890 25 H 0.181 0.819 26 H 0.268 0.732 27 H 0.091 0.909 28 H 0.156 0.844 29 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -12.993 -4.746 -2.378 14.036 hybrid contribution 3.224 0.384 0.006 3.247 sum -9.769 -4.362 -2.372 10.958 Atomic orbital electron populations 1.20632 0.82889 1.05011 1.04931 1.23972 0.99948 0.83021 0.92851 1.68274 1.08405 1.31159 1.13579 1.23353 0.90153 0.98314 0.94793 1.19587 0.83793 0.97411 1.03376 1.40589 1.01802 1.29593 1.52859 1.24943 0.91529 0.95277 0.96892 1.67533 1.06831 1.21737 1.24544 1.18014 0.95327 0.87019 0.89007 1.19293 0.89679 1.14935 1.26195 0.89671 1.26904 1.06044 0.93462 0.92784 1.70198 1.37514 1.13547 1.19111 0.85075 0.75203 0.79809 0.78797 1.18725 1.19078 1.18217 1.25220 0.94935 1.18360 1.27502 1.82346 1.10809 1.30628 1.47769 1.23517 0.89412 0.97549 0.93359 1.68318 1.08729 1.30399 1.13699 0.88299 0.88460 0.89019 0.81880 0.73163 0.90890 0.84405 0.78143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.27 10.31 71.24 0.73 -0.53 15 2 C 0.27 6.93 7.64 138.75 1.06 7.99 15 3 N -0.50 -14.95 10.32 -187.35 -1.93 -16.89 15 4 C 0.10 3.38 9.47 84.88 0.80 4.18 15 5 C 0.06 1.87 6.28 38.38 0.24 2.11 15 6 N -0.62 -21.43 5.49 -186.90 -1.03 -22.45 15 7 C 0.29 12.91 8.09 179.51 1.45 14.36 15 8 N -0.48 -25.94 8.50 -191.01 -1.62 -27.56 15 9 C 0.23 12.91 6.47 39.43 0.25 13.17 15 10 C -0.47 -26.10 9.22 23.29 0.21 -25.88 15 11 H 0.09 4.55 7.84 -2.91 -0.02 4.53 15 12 C 0.03 1.42 5.49 85.14 0.47 1.89 15 13 N -0.78 -41.55 11.68 21.78 0.25 -41.30 15 14 Si 0.99 38.65 29.56 68.60 2.03 40.67 15 15 H -0.26 -9.87 7.11 99.48 0.71 -9.17 15 16 H -0.27 -9.82 7.11 99.48 0.71 -9.11 15 17 H -0.26 -9.83 7.11 99.48 0.71 -9.12 15 18 C -0.52 -27.03 10.97 67.71 0.74 -26.29 15 19 S 0.04 1.82 19.41 -56.49 -1.10 0.72 15 20 C 0.13 3.33 11.26 84.88 0.96 4.28 15 21 N -0.50 -12.80 10.32 -187.34 -1.93 -14.73 15 22 H 0.10 1.33 8.14 -2.38 -0.02 1.31 15 23 H 0.10 1.34 8.14 -2.39 -0.02 1.32 15 24 H 0.09 1.39 8.14 -2.39 -0.02 1.37 15 25 H 0.16 5.68 5.95 -4.79 -0.03 5.65 15 26 H 0.43 13.42 8.94 -92.71 -0.83 12.59 15 27 H 0.28 13.47 8.30 -92.71 -0.77 12.70 15 28 H 0.14 6.94 8.06 -2.91 -0.02 6.91 15 29 H 0.20 3.64 8.06 -2.91 -0.02 3.62 15 Total: -1.00 -65.62 273.39 1.96 -63.66 By element: Atomic # 1 Polarization: 22.22 SS G_CDS: 0.37 Total: 22.59 kcal Atomic # 6 Polarization: -11.64 SS G_CDS: 6.93 Total: -4.71 kcal Atomic # 7 Polarization: -116.67 SS G_CDS: -6.26 Total: -122.93 kcal Atomic # 14 Polarization: 38.65 SS G_CDS: 2.03 Total: 40.67 kcal Atomic # 16 Polarization: 1.82 SS G_CDS: -1.10 Total: 0.72 kcal Total: -65.62 1.96 -63.66 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076027970.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.717 kcal (2) G-P(sol) polarization free energy of solvation -65.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.659 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds