Wall clock time and date at job start Mon Mar 30 2020 06:17:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31585 * 1 3 3 Si 1.86792 * 120.00440 * 2 1 4 4 H 1.48491 * 109.47250 * 240.00144 * 3 2 1 5 5 H 1.48502 * 109.47241 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47404 * 120.00010 * 3 2 1 7 7 C 1.38627 * 119.99294 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99512 * 179.97438 * 7 2 1 9 9 O 1.34805 * 120.00560 * 0.02562 * 7 2 1 10 10 C 1.35798 * 117.00022 * 185.06257 * 9 7 2 11 11 C 1.38395 * 120.03257 * 354.39575 * 10 9 7 12 12 C 1.39544 * 119.86332 * 180.25001 * 11 10 9 13 13 C 1.47791 * 120.04028 * 179.76494 * 12 11 10 14 14 N 1.30262 * 125.47325 * 0.02562 * 13 12 11 15 15 C 1.31372 * 117.00975 * 180.20163 * 14 13 12 16 16 C 1.33654 * 115.85761 * 359.52912 * 15 14 13 17 17 S 1.76171 * 125.47521 * 179.72693 * 13 12 11 18 18 C 1.39672 * 119.91931 * 359.49433 * 12 11 10 19 19 C 1.37873 * 120.06218 * 0.29585 * 18 12 11 20 20 C 1.38905 * 120.14006 * 359.95298 * 19 18 12 21 21 N 1.39588 * 119.96187 * 180.02562 * 20 19 18 22 22 H 0.96999 * 119.99644 * 0.02562 * 1 2 3 23 23 H 1.08003 * 120.07265 * 0.04264 * 11 10 9 24 24 H 1.08001 * 122.07492 * 179.79273 * 15 14 13 25 25 H 1.08001 * 125.88462 * 180.22320 * 16 15 14 26 26 H 1.08006 * 119.96909 * 180.27795 * 18 12 11 27 27 H 1.08001 * 119.92769 * 179.97438 * 19 18 12 28 28 H 0.97000 * 119.99779 * 0.02562 * 21 20 19 29 29 H 0.97003 * 119.99830 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2499 1.6176 0.0000 4 1 3.1036 1.6962 -1.2124 5 1 1.2850 2.7464 0.0006 6 1 3.1037 1.6963 1.2125 7 6 2.0088 -1.2006 0.0005 8 1 3.0888 -1.2007 0.0001 9 8 1.3348 -2.3681 0.0005 10 6 2.0702 -3.5046 0.1078 11 6 3.4526 -3.4390 0.0940 12 6 4.2048 -4.6096 0.1993 13 6 5.6811 -4.5446 0.1798 14 7 6.3885 -3.4564 0.0697 15 6 7.6952 -3.5919 0.0667 16 6 8.1519 -4.8421 0.1878 17 16 6.7671 -5.9258 0.3090 18 6 3.5608 -5.8423 0.3288 19 6 2.1836 -5.9035 0.3466 20 6 1.4322 -4.7403 0.2368 21 7 0.0381 -4.8066 0.2557 22 1 -0.4849 0.8401 -0.0004 23 1 3.9481 -2.4842 -0.0014 24 1 8.3594 -2.7451 -0.0237 25 1 9.1905 -5.1376 0.2079 26 1 4.1423 -6.7483 0.4149 27 1 1.6879 -6.8578 0.4464 28 1 -0.4055 -5.6645 0.3459 29 1 -0.4871 -3.9947 0.1787 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076852448.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:13 Heat of formation + Delta-G solvation = 45.652908 kcal Electronic energy + Delta-G solvation = -16465.735618 eV Core-core repulsion = 13674.439898 eV Total energy + Delta-G solvation = -2791.295720 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.052 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.48337 -38.79904 -36.48603 -34.09441 -32.18542 -30.48739 -29.09040 -27.75506 -25.53122 -24.37220 -22.07440 -21.24307 -19.31889 -18.35975 -17.52745 -16.81236 -16.15064 -15.58465 -15.23404 -14.39830 -14.22521 -14.00083 -13.66349 -13.61264 -13.16924 -12.98414 -12.44015 -11.75383 -11.69261 -11.46556 -11.17483 -10.91108 -10.75890 -10.41476 -10.35619 -9.45058 -9.35152 -9.19907 -8.79321 -8.61916 -7.65200 -6.50866 -6.39833 -3.94988 0.66150 1.56348 1.95434 2.21415 2.28813 3.19337 3.19951 3.23051 3.31883 4.02126 4.43493 4.57149 4.58188 5.07222 5.18825 5.28216 5.40519 5.58296 5.67150 5.85802 6.14072 6.30638 6.50770 6.67038 6.80912 6.99288 7.20435 7.35411 7.58544 8.00242 8.06021 8.15503 8.45396 9.07370 9.73647 10.78315 Molecular weight = 262.05amu Principal moments of inertia in cm(-1) A = 0.018293 B = 0.006728 C = 0.004930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1530.239340 B = 4160.678538 C = 5678.012934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.039 3.961 3 Si 0.938 3.062 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.270 1.270 7 C -0.383 4.383 8 H 0.092 0.908 9 O -0.183 6.183 10 C 0.084 3.916 11 C -0.146 4.146 12 C -0.060 4.060 13 C 0.167 3.833 14 N -0.483 5.483 15 C 0.050 3.950 16 C -0.276 4.276 17 S 0.049 5.951 18 C -0.121 4.121 19 C -0.176 4.176 20 C 0.189 3.811 21 N -0.870 5.870 22 H 0.268 0.732 23 H 0.142 0.858 24 H 0.169 0.831 25 H 0.172 0.828 26 H 0.110 0.890 27 H 0.119 0.881 28 H 0.389 0.611 29 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.831 -10.268 0.703 13.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.164 4.164 3 Si 0.763 3.237 4 H -0.195 1.195 5 H -0.205 1.205 6 H -0.195 1.195 7 C -0.460 4.460 8 H 0.110 0.890 9 O -0.088 6.088 10 C 0.030 3.970 11 C -0.170 4.170 12 C -0.066 4.066 13 C -0.107 4.107 14 N -0.196 5.196 15 C -0.102 4.102 16 C -0.415 4.415 17 S 0.304 5.696 18 C -0.143 4.143 19 C -0.200 4.200 20 C 0.083 3.917 21 N -0.411 5.411 22 H 0.078 0.922 23 H 0.160 0.840 24 H 0.186 0.814 25 H 0.189 0.811 26 H 0.128 0.872 27 H 0.137 0.863 28 H 0.216 0.784 29 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 8.167 -10.618 0.748 13.416 hybrid contribution 0.983 1.452 -0.061 1.754 sum 9.149 -9.166 0.687 12.969 Atomic orbital electron populations 1.70017 1.05833 1.27583 1.47098 1.25200 0.95826 0.98620 0.96789 0.85808 0.78666 0.79859 0.79335 1.19498 1.20461 1.19513 1.21260 0.91888 0.80633 1.52175 0.89037 1.83879 1.33574 1.10963 1.80406 1.18744 0.90064 0.87368 1.00872 1.20988 0.92319 0.98339 1.05374 1.17307 0.85444 0.94256 1.09633 1.26170 0.97690 0.88370 0.98424 1.66656 1.05641 1.29130 1.18193 1.21670 0.90706 0.96877 1.00966 1.26773 1.02881 0.96230 1.15580 1.84776 0.99285 1.14921 1.70590 1.20352 0.93867 0.95105 1.04986 1.19951 0.93082 0.95573 1.11392 1.17297 0.84331 0.91354 0.98755 1.42267 1.03200 1.11350 1.84245 0.92181 0.84041 0.81362 0.81094 0.87175 0.86282 0.78379 0.76223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.01 13.67 55.48 0.76 -24.25 15 2 C 0.04 1.07 5.49 -17.51 -0.10 0.97 15 3 Si 0.94 20.99 29.55 -169.99 -5.02 15.96 15 4 H -0.27 -5.91 7.11 56.52 0.40 -5.51 15 5 H -0.28 -6.08 7.11 56.52 0.40 -5.68 15 6 H -0.27 -5.92 7.11 56.52 0.40 -5.52 15 7 C -0.38 -10.68 9.48 30.88 0.29 -10.39 15 8 H 0.09 2.45 5.20 -52.49 -0.27 2.18 15 9 O -0.18 -4.99 8.99 -0.03 0.00 -5.00 15 10 C 0.08 1.98 6.66 -38.99 -0.26 1.72 15 11 C -0.15 -3.29 8.79 -39.04 -0.34 -3.63 15 12 C -0.06 -1.17 5.87 -104.97 -0.62 -1.79 15 13 C 0.17 3.03 7.34 -14.31 -0.11 2.93 15 14 N -0.48 -8.98 10.14 -11.38 -0.12 -9.10 15 15 C 0.05 0.73 11.24 -19.35 -0.22 0.51 15 16 C -0.28 -3.51 11.35 29.13 0.33 -3.18 15 17 S 0.05 0.68 22.38 -107.50 -2.41 -1.72 15 18 C -0.12 -2.07 9.59 -39.18 -0.38 -2.44 15 19 C -0.18 -2.97 9.87 -39.47 -0.39 -3.36 15 20 C 0.19 3.73 6.77 -83.55 -0.57 3.16 15 21 N -0.87 -14.87 9.07 32.54 0.30 -14.58 15 22 H 0.27 7.17 8.31 -40.82 -0.34 6.83 15 23 H 0.14 3.39 5.38 -52.48 -0.28 3.11 15 24 H 0.17 1.98 8.06 -52.49 -0.42 1.55 15 25 H 0.17 1.59 8.06 -52.49 -0.42 1.16 15 26 H 0.11 1.59 7.29 -52.48 -0.38 1.21 15 27 H 0.12 1.61 8.06 -52.49 -0.42 1.19 15 28 H 0.39 5.11 8.84 -40.82 -0.36 4.74 15 29 H 0.41 7.66 8.18 -40.82 -0.33 7.32 15 LS Contribution 274.96 15.07 4.14 4.14 Total: -1.00 -30.72 274.96 -6.73 -37.45 By element: Atomic # 1 Polarization: 14.63 SS G_CDS: -2.04 Total: 12.59 kcal Atomic # 6 Polarization: -13.16 SS G_CDS: -2.35 Total: -15.51 kcal Atomic # 7 Polarization: -48.87 SS G_CDS: 0.94 Total: -47.93 kcal Atomic # 8 Polarization: -4.99 SS G_CDS: 0.00 Total: -5.00 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.96 kcal Atomic # 16 Polarization: 0.68 SS G_CDS: -2.41 Total: -1.72 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -30.72 -6.73 -37.45 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076852448.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.104 kcal (2) G-P(sol) polarization free energy of solvation -30.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.451 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds