Wall clock time and date at job start Mon Mar 30 2020 06:17:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31585 * 1 3 3 Si 1.86792 * 120.00440 * 2 1 4 4 H 1.48491 * 109.47250 * 240.00144 * 3 2 1 5 5 H 1.48502 * 109.47241 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47404 * 120.00010 * 3 2 1 7 7 C 1.38627 * 119.99294 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99512 * 179.97438 * 7 2 1 9 9 O 1.34805 * 120.00560 * 0.02562 * 7 2 1 10 10 C 1.35798 * 117.00022 * 185.06257 * 9 7 2 11 11 C 1.38395 * 120.03257 * 354.39575 * 10 9 7 12 12 C 1.39544 * 119.86332 * 180.25001 * 11 10 9 13 13 C 1.47791 * 120.04028 * 179.76494 * 12 11 10 14 14 N 1.30262 * 125.47325 * 0.02562 * 13 12 11 15 15 C 1.31372 * 117.00975 * 180.20163 * 14 13 12 16 16 C 1.33654 * 115.85761 * 359.52912 * 15 14 13 17 17 S 1.76171 * 125.47521 * 179.72693 * 13 12 11 18 18 C 1.39672 * 119.91931 * 359.49433 * 12 11 10 19 19 C 1.37873 * 120.06218 * 0.29585 * 18 12 11 20 20 C 1.38905 * 120.14006 * 359.95298 * 19 18 12 21 21 N 1.39588 * 119.96187 * 180.02562 * 20 19 18 22 22 H 0.96999 * 119.99644 * 0.02562 * 1 2 3 23 23 H 1.08003 * 120.07265 * 0.04264 * 11 10 9 24 24 H 1.08001 * 122.07492 * 179.79273 * 15 14 13 25 25 H 1.08001 * 125.88462 * 180.22320 * 16 15 14 26 26 H 1.08006 * 119.96909 * 180.27795 * 18 12 11 27 27 H 1.08001 * 119.92769 * 179.97438 * 19 18 12 28 28 H 0.97000 * 119.99779 * 0.02562 * 21 20 19 29 29 H 0.97003 * 119.99830 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2499 1.6176 0.0000 4 1 3.1036 1.6962 -1.2124 5 1 1.2850 2.7464 0.0006 6 1 3.1037 1.6963 1.2125 7 6 2.0088 -1.2006 0.0005 8 1 3.0888 -1.2007 0.0001 9 8 1.3348 -2.3681 0.0005 10 6 2.0702 -3.5046 0.1078 11 6 3.4526 -3.4390 0.0940 12 6 4.2048 -4.6096 0.1993 13 6 5.6811 -4.5446 0.1798 14 7 6.3885 -3.4564 0.0697 15 6 7.6952 -3.5919 0.0667 16 6 8.1519 -4.8421 0.1878 17 16 6.7671 -5.9258 0.3090 18 6 3.5608 -5.8423 0.3288 19 6 2.1836 -5.9035 0.3466 20 6 1.4322 -4.7403 0.2368 21 7 0.0381 -4.8066 0.2557 22 1 -0.4849 0.8401 -0.0004 23 1 3.9481 -2.4842 -0.0014 24 1 8.3594 -2.7451 -0.0237 25 1 9.1905 -5.1376 0.2079 26 1 4.1423 -6.7483 0.4149 27 1 1.6879 -6.8578 0.4464 28 1 -0.4055 -5.6645 0.3459 29 1 -0.4871 -3.9947 0.1787 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076852448.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:12 Heat of formation + Delta-G solvation = 23.796630 kcal Electronic energy + Delta-G solvation = -16466.683378 eV Core-core repulsion = 13674.439898 eV Total energy + Delta-G solvation = -2792.243479 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.052 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.99081 -40.16160 -38.18310 -35.54419 -34.18234 -31.74319 -30.69519 -29.13214 -27.46126 -25.70065 -23.66617 -22.70674 -20.64602 -19.97285 -19.09748 -18.29993 -17.62348 -17.12325 -16.64313 -16.06197 -15.69613 -15.51864 -15.24585 -15.05493 -14.66708 -14.42884 -13.87178 -13.55394 -13.34730 -12.98978 -12.64499 -12.43626 -12.25034 -12.11704 -11.75454 -11.36416 -10.76420 -10.58120 -10.36753 -9.81252 -9.27813 -8.42592 -8.02297 -6.03825 -0.58418 0.38578 0.67517 0.81654 0.86266 1.34900 1.43896 1.48959 2.04569 2.19736 2.89667 3.11826 3.21510 3.26752 3.47277 4.12420 4.15009 4.38826 4.41597 4.56824 4.64984 4.94069 5.06758 5.09745 5.24945 5.39950 5.53991 5.70378 5.98495 6.06893 6.60857 6.89798 7.04231 7.15040 7.83597 8.79870 Molecular weight = 262.05amu Principal moments of inertia in cm(-1) A = 0.018293 B = 0.006728 C = 0.004930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1530.239340 B = 4160.678538 C = 5678.012934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.017 4.017 3 Si 1.006 2.994 4 H -0.264 1.264 5 H -0.268 1.268 6 H -0.264 1.264 7 C -0.403 4.403 8 H 0.087 0.913 9 O -0.224 6.224 10 C 0.040 3.960 11 C -0.159 4.159 12 C -0.072 4.072 13 C 0.114 3.886 14 N -0.519 5.519 15 C 0.019 3.981 16 C -0.247 4.247 17 S 0.113 5.887 18 C -0.100 4.100 19 C -0.162 4.162 20 C 0.181 3.819 21 N -0.861 5.861 22 H 0.271 0.729 23 H 0.113 0.887 24 H 0.191 0.809 25 H 0.215 0.785 26 H 0.149 0.851 27 H 0.166 0.834 28 H 0.410 0.590 29 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.369 -13.064 1.016 17.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.214 4.214 3 Si 0.827 3.173 4 H -0.188 1.188 5 H -0.192 1.192 6 H -0.189 1.189 7 C -0.479 4.479 8 H 0.105 0.895 9 O -0.131 6.131 10 C -0.012 4.012 11 C -0.183 4.183 12 C -0.078 4.078 13 C -0.159 4.159 14 N -0.233 5.233 15 C -0.132 4.132 16 C -0.386 4.386 17 S 0.368 5.632 18 C -0.121 4.121 19 C -0.186 4.186 20 C 0.074 3.926 21 N -0.402 5.402 22 H 0.080 0.920 23 H 0.131 0.869 24 H 0.208 0.792 25 H 0.231 0.769 26 H 0.166 0.834 27 H 0.184 0.816 28 H 0.241 0.759 29 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 10.706 -13.489 1.065 17.254 hybrid contribution 0.479 1.949 -0.136 2.012 sum 11.184 -11.540 0.929 16.097 Atomic orbital electron populations 1.70132 1.07361 1.28463 1.49538 1.26272 0.96812 1.01894 0.96420 0.84819 0.77533 0.75456 0.79528 1.18833 1.19178 1.18909 1.21548 0.92006 0.81802 1.52567 0.89537 1.83825 1.34494 1.11621 1.83205 1.19273 0.90830 0.87774 1.03306 1.20918 0.92398 0.98670 1.06319 1.17537 0.86926 0.94012 1.09321 1.26004 0.97596 0.90647 1.01648 1.66619 1.07690 1.30926 1.18105 1.22056 0.89736 0.98813 1.02569 1.27384 1.04602 0.95130 1.11476 1.84420 0.97849 1.12174 1.68732 1.20827 0.94286 0.95367 1.01641 1.20479 0.93035 0.96213 1.08827 1.17580 0.85568 0.90901 0.98531 1.42203 1.02308 1.12074 1.83609 0.92033 0.86938 0.79200 0.76867 0.83388 0.81631 0.75943 0.77333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.57 13.67 21.61 0.30 -55.27 15 2 C -0.02 -0.95 5.49 84.82 0.47 -0.49 15 3 Si 1.01 44.93 29.55 68.60 2.03 46.96 15 4 H -0.26 -11.34 7.11 99.48 0.71 -10.63 15 5 H -0.27 -11.26 7.11 99.48 0.71 -10.55 15 6 H -0.26 -11.39 7.11 99.48 0.71 -10.68 15 7 C -0.40 -24.05 9.48 67.91 0.64 -23.41 15 8 H 0.09 5.05 5.20 -2.91 -0.02 5.03 15 9 O -0.22 -13.10 8.99 -23.03 -0.21 -13.31 15 10 C 0.04 1.99 6.66 22.65 0.15 2.14 15 11 C -0.16 -7.57 8.79 22.62 0.20 -7.37 15 12 C -0.07 -2.79 5.87 -20.09 -0.12 -2.90 15 13 C 0.11 4.02 7.34 87.45 0.64 4.66 15 14 N -0.52 -19.21 10.14 -189.90 -1.92 -21.13 15 15 C 0.02 0.51 11.24 83.72 0.94 1.46 15 16 C -0.25 -5.25 11.35 66.78 0.76 -4.49 15 17 S 0.11 2.72 22.38 -56.49 -1.26 1.46 15 18 C -0.10 -3.13 9.59 22.53 0.22 -2.91 15 19 C -0.16 -5.01 9.87 22.34 0.22 -4.79 15 20 C 0.18 7.14 6.77 38.41 0.26 7.40 15 21 N -0.86 -29.31 9.07 -50.96 -0.46 -29.77 15 22 H 0.27 15.17 8.31 -92.71 -0.77 14.40 15 23 H 0.11 5.89 5.38 -2.91 -0.02 5.87 15 24 H 0.19 4.09 8.06 -2.91 -0.02 4.07 15 25 H 0.21 2.64 8.06 -2.91 -0.02 2.62 15 26 H 0.15 3.52 7.29 -2.91 -0.02 3.49 15 27 H 0.17 3.58 8.06 -2.91 -0.02 3.56 15 28 H 0.41 10.06 8.84 -92.71 -0.82 9.24 15 29 H 0.40 15.56 8.18 -92.71 -0.76 14.80 15 Total: -1.00 -73.04 274.96 2.49 -70.55 By element: Atomic # 1 Polarization: 31.57 SS G_CDS: -0.35 Total: 31.22 kcal Atomic # 6 Polarization: -35.08 SS G_CDS: 4.38 Total: -30.70 kcal Atomic # 7 Polarization: -104.08 SS G_CDS: -2.09 Total: -106.18 kcal Atomic # 8 Polarization: -13.10 SS G_CDS: -0.21 Total: -13.31 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Atomic # 16 Polarization: 2.72 SS G_CDS: -1.26 Total: 1.46 kcal Total: -73.04 2.49 -70.55 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076852448.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.345 kcal (2) G-P(sol) polarization free energy of solvation -73.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.549 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds