Wall clock time and date at job start Mon Mar 30 2020 06:21:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 S 1.70399 * 124.57172 * 2 1 4 4 C 1.75452 * 92.62420 * 180.02562 * 3 2 1 5 5 C 1.47802 * 124.63255 * 179.97438 * 4 3 2 6 6 C 1.39609 * 120.12257 * 359.70164 * 5 4 3 7 7 C 1.37900 * 119.87751 * 179.97438 * 6 5 4 8 8 C 1.38589 * 120.12734 * 359.97438 * 7 6 5 9 9 F 1.35096 * 119.88582 * 180.02562 * 8 7 6 10 10 C 1.38595 * 120.23830 * 0.27459 * 8 7 6 11 11 C 1.37910 * 120.12012 * 359.45028 * 10 8 7 12 12 C 1.34046 * 110.73593 * 359.67177 * 4 3 2 13 13 C 1.37726 * 124.57436 * 179.69781 * 2 1 3 14 14 C 1.41317 * 123.58541 * 359.97438 * 13 2 1 15 15 H 1.08004 * 119.99843 * 339.18682 * 14 13 2 16 16 C 1.39591 * 119.99993 * 159.18850 * 14 13 2 17 17 N 1.31093 * 120.00058 * 349.12811 * 16 14 13 18 18 Si 1.86802 * 120.00126 * 169.13295 * 16 14 13 19 19 H 1.48505 * 109.46816 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47373 * 119.99339 * 18 16 14 21 21 H 1.48496 * 109.47017 * 239.99908 * 18 16 14 22 22 H 1.09000 * 109.47081 * 270.30642 * 1 2 3 23 23 H 1.08995 * 109.47745 * 30.30440 * 1 2 3 24 24 H 1.09003 * 109.47271 * 150.30835 * 1 2 3 25 25 H 1.08000 * 120.05446 * 0.02562 * 6 5 4 26 26 H 1.08010 * 119.93788 * 179.97438 * 7 6 5 27 27 H 1.08003 * 119.93869 * 179.69659 * 10 8 7 28 28 H 1.08004 * 120.06279 * 180.29153 * 11 10 8 29 29 H 1.07996 * 123.52363 * 180.24936 * 12 4 3 30 30 H 0.97009 * 120.00529 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.4739 1.4031 0.0000 4 6 3.9627 0.4747 -0.0008 5 6 5.3189 1.0622 -0.0017 6 6 5.4819 2.4487 -0.0082 7 6 6.7496 2.9914 -0.0085 8 6 7.8608 2.1632 -0.0017 9 9 9.1005 2.7001 -0.0015 10 6 7.7049 0.7861 -0.0004 11 6 6.4418 0.2326 0.0056 12 6 3.7021 -0.8402 0.0062 13 6 2.2886 -1.1340 0.0060 14 6 1.7628 -2.4457 0.0134 15 1 0.7505 -2.6199 0.3471 16 6 2.5519 -3.5163 -0.4105 17 7 3.6946 -3.2906 -1.0121 18 14 1.9796 -5.2707 -0.1206 19 1 0.6667 -5.2548 0.5731 20 1 1.8427 -5.9686 -1.4243 21 1 2.9747 -5.9834 0.7203 22 1 -0.3633 0.0055 1.0277 23 1 -0.3634 0.8872 -0.5185 24 1 -0.3634 -0.8928 -0.5090 25 1 4.6166 3.0950 -0.0123 26 1 6.8768 4.0640 -0.0140 27 1 8.5742 0.1452 -0.0001 28 1 6.3213 -0.8407 0.0114 29 1 4.4692 -1.6002 0.0110 30 1 4.2429 -4.0345 -1.3070 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000077093869.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:46 Heat of formation + Delta-G solvation = -16.181628 kcal Electronic energy + Delta-G solvation = -16242.627443 eV Core-core repulsion = 13428.730415 eV Total energy + Delta-G solvation = -2813.897028 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.052 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -48.65399 -38.69306 -36.42207 -33.05386 -31.81849 -30.90172 -29.03265 -27.05442 -24.10426 -22.99745 -21.95962 -20.63538 -18.67674 -17.40662 -16.51887 -15.85304 -15.46583 -15.35425 -15.31193 -14.40842 -13.97527 -13.29731 -13.00719 -12.90689 -12.85174 -12.25234 -12.21192 -11.84853 -11.52675 -11.33098 -11.14926 -10.86652 -10.79694 -10.56444 -10.21159 -9.98913 -9.52019 -9.13567 -8.87163 -8.55164 -7.11062 -6.99288 -6.73676 -4.36019 1.16894 1.52365 2.56732 2.97131 2.97578 3.04726 3.10030 3.64994 3.82489 3.93885 4.23776 4.52020 5.02154 5.08421 5.23208 5.31071 5.57600 5.65802 6.15890 6.27792 6.36105 6.39299 6.45235 6.56311 6.61499 6.71915 6.97995 7.06132 7.13764 7.28532 7.32646 7.51676 7.90599 8.35713 8.68533 8.85394 10.16764 Molecular weight = 262.05amu Principal moments of inertia in cm(-1) A = 0.022468 B = 0.006042 C = 0.004807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.890876 B = 4633.399677 C = 5823.420815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.034 4.034 2 C -0.380 4.380 3 S 0.034 5.966 4 C -0.203 4.203 5 C 0.017 3.983 6 C -0.101 4.101 7 C -0.146 4.146 8 C 0.068 3.932 9 F -0.149 7.149 10 C -0.145 4.145 11 C -0.089 4.089 12 C -0.055 4.055 13 C 0.085 3.915 14 C -0.434 4.434 15 H 0.080 0.920 16 C 0.073 3.927 17 N -0.814 5.814 18 Si 0.914 3.086 19 H -0.261 1.261 20 H -0.275 1.275 21 H -0.273 1.273 22 H 0.036 0.964 23 H 0.035 0.965 24 H 0.058 0.942 25 H 0.131 0.869 26 H 0.130 0.870 27 H 0.131 0.869 28 H 0.138 0.862 29 H 0.151 0.849 30 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.326 5.087 1.380 6.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.498 4.498 3 S 0.298 5.702 4 C -0.318 4.318 5 C 0.015 3.985 6 C -0.120 4.120 7 C -0.165 4.165 8 C 0.049 3.951 9 F -0.128 7.128 10 C -0.164 4.164 11 C -0.109 4.109 12 C -0.089 4.089 13 C 0.075 3.925 14 C -0.468 4.468 15 H 0.098 0.902 16 C -0.143 4.143 17 N -0.442 5.442 18 Si 0.739 3.261 19 H -0.185 1.185 20 H -0.200 1.200 21 H -0.198 1.198 22 H 0.054 0.946 23 H 0.054 0.946 24 H 0.076 0.924 25 H 0.148 0.852 26 H 0.148 0.852 27 H 0.149 0.851 28 H 0.156 0.844 29 H 0.168 0.832 30 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 4.180 6.520 1.272 7.848 hybrid contribution 0.351 -2.348 -0.003 2.374 sum 4.531 4.172 1.269 6.289 Atomic orbital electron populations 1.19636 0.90491 1.00019 0.99126 1.23184 0.98222 0.94869 1.33492 1.81540 0.96065 1.11683 1.80940 1.22368 0.94162 0.97328 1.17911 1.18397 0.91367 0.92385 0.96319 1.21072 0.96467 0.94322 1.00102 1.20925 0.91575 0.99855 1.04118 1.17694 0.79319 0.91880 1.06212 1.91444 1.40217 1.86747 1.94367 1.20996 0.98609 0.92944 1.03802 1.21177 0.90378 1.00718 0.98612 1.22126 0.98182 0.93275 0.95325 1.17700 0.89370 0.92950 0.92435 1.19132 0.99873 0.89952 1.37841 0.90211 1.25879 0.94263 1.01711 0.92452 1.69820 1.11284 1.33884 1.29251 0.86162 0.79902 0.81225 0.78856 1.18499 1.20006 1.19824 0.94572 0.94630 0.92351 0.85165 0.85170 0.85061 0.84439 0.83164 0.91004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.03 -0.70 9.92 36.01 0.36 -0.35 16 2 C -0.38 -9.07 6.39 -34.50 -0.22 -9.29 16 3 S 0.03 0.72 21.78 -107.50 -2.34 -1.62 16 4 C -0.20 -4.45 6.31 -37.15 -0.23 -4.68 16 5 C 0.02 0.33 5.87 -104.96 -0.62 -0.29 16 6 C -0.10 -1.67 9.58 -39.19 -0.38 -2.04 16 7 C -0.15 -2.15 10.01 -39.58 -0.40 -2.55 16 8 C 0.07 1.04 7.30 -39.32 -0.29 0.75 16 9 F -0.15 -2.22 17.26 2.25 0.04 -2.18 16 10 C -0.14 -2.20 10.01 -39.57 -0.40 -2.60 16 11 C -0.09 -1.54 9.52 -39.19 -0.37 -1.92 16 12 C -0.06 -1.34 8.55 -38.65 -0.33 -1.67 16 13 C 0.09 2.19 5.67 -106.50 -0.60 1.59 16 14 C -0.43 -11.13 8.64 -37.91 -0.33 -11.46 16 15 H 0.08 1.99 7.28 -52.48 -0.38 1.61 16 16 C 0.07 1.76 5.38 -17.36 -0.09 1.66 16 17 N -0.81 -20.00 10.74 55.53 0.60 -19.40 16 18 Si 0.91 18.24 29.57 -169.99 -5.03 13.21 16 19 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 20 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 21 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 22 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 23 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.06 1.22 7.37 -51.93 -0.38 0.84 16 25 H 0.13 2.02 7.23 -52.49 -0.38 1.64 16 26 H 0.13 1.57 8.06 -52.48 -0.42 1.15 16 27 H 0.13 1.68 8.06 -52.48 -0.42 1.26 16 28 H 0.14 2.37 6.72 -52.48 -0.35 2.02 16 29 H 0.15 3.65 5.11 -52.49 -0.27 3.38 16 30 H 0.28 6.25 8.30 -40.82 -0.34 5.92 16 LS Contribution 278.24 15.07 4.19 4.19 Total: -1.00 -26.03 278.24 -9.03 -35.06 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: -2.59 Total: 3.56 kcal Atomic # 6 Polarization: -28.93 SS G_CDS: -3.90 Total: -32.83 kcal Atomic # 7 Polarization: -20.00 SS G_CDS: 0.60 Total: -19.40 kcal Atomic # 9 Polarization: -2.22 SS G_CDS: 0.04 Total: -2.18 kcal Atomic # 14 Polarization: 18.24 SS G_CDS: -5.03 Total: 13.21 kcal Atomic # 16 Polarization: 0.72 SS G_CDS: -2.34 Total: -1.62 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -26.03 -9.03 -35.06 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000077093869.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.881 kcal (2) G-P(sol) polarization free energy of solvation -26.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds