Wall clock time and date at job start Mon Mar 30 2020 06:21:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 S 1.70399 * 124.57172 * 2 1 4 4 C 1.75452 * 92.62420 * 180.02562 * 3 2 1 5 5 C 1.47802 * 124.63255 * 179.97438 * 4 3 2 6 6 C 1.39609 * 120.12257 * 359.70164 * 5 4 3 7 7 C 1.37900 * 119.87751 * 179.97438 * 6 5 4 8 8 C 1.38589 * 120.12734 * 359.97438 * 7 6 5 9 9 F 1.35096 * 119.88582 * 180.02562 * 8 7 6 10 10 C 1.38595 * 120.23830 * 0.27459 * 8 7 6 11 11 C 1.37910 * 120.12012 * 359.45028 * 10 8 7 12 12 C 1.34046 * 110.73593 * 359.67177 * 4 3 2 13 13 C 1.37726 * 124.57436 * 179.69781 * 2 1 3 14 14 C 1.41317 * 123.58541 * 359.97438 * 13 2 1 15 15 H 1.08004 * 119.99843 * 339.18682 * 14 13 2 16 16 C 1.39591 * 119.99993 * 159.18850 * 14 13 2 17 17 N 1.31093 * 120.00058 * 349.12811 * 16 14 13 18 18 Si 1.86802 * 120.00126 * 169.13295 * 16 14 13 19 19 H 1.48505 * 109.46816 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47373 * 119.99339 * 18 16 14 21 21 H 1.48496 * 109.47017 * 239.99908 * 18 16 14 22 22 H 1.09000 * 109.47081 * 270.30642 * 1 2 3 23 23 H 1.08995 * 109.47745 * 30.30440 * 1 2 3 24 24 H 1.09003 * 109.47271 * 150.30835 * 1 2 3 25 25 H 1.08000 * 120.05446 * 0.02562 * 6 5 4 26 26 H 1.08010 * 119.93788 * 179.97438 * 7 6 5 27 27 H 1.08003 * 119.93869 * 179.69659 * 10 8 7 28 28 H 1.08004 * 120.06279 * 180.29153 * 11 10 8 29 29 H 1.07996 * 123.52363 * 180.24936 * 12 4 3 30 30 H 0.97009 * 120.00529 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.4739 1.4031 0.0000 4 6 3.9627 0.4747 -0.0008 5 6 5.3189 1.0622 -0.0017 6 6 5.4819 2.4487 -0.0082 7 6 6.7496 2.9914 -0.0085 8 6 7.8608 2.1632 -0.0017 9 9 9.1005 2.7001 -0.0015 10 6 7.7049 0.7861 -0.0004 11 6 6.4418 0.2326 0.0056 12 6 3.7021 -0.8402 0.0062 13 6 2.2886 -1.1340 0.0060 14 6 1.7628 -2.4457 0.0134 15 1 0.7505 -2.6199 0.3471 16 6 2.5519 -3.5163 -0.4105 17 7 3.6946 -3.2906 -1.0121 18 14 1.9796 -5.2707 -0.1206 19 1 0.6667 -5.2548 0.5731 20 1 1.8427 -5.9686 -1.4243 21 1 2.9747 -5.9834 0.7203 22 1 -0.3633 0.0055 1.0277 23 1 -0.3634 0.8872 -0.5185 24 1 -0.3634 -0.8928 -0.5090 25 1 4.6166 3.0950 -0.0123 26 1 6.8768 4.0640 -0.0140 27 1 8.5742 0.1452 -0.0001 28 1 6.3213 -0.8407 0.0114 29 1 4.4692 -1.6002 0.0110 30 1 4.2429 -4.0345 -1.3070 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000077093869.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:45 Heat of formation + Delta-G solvation = -26.805379 kcal Electronic energy + Delta-G solvation = -16243.088123 eV Core-core repulsion = 13428.730415 eV Total energy + Delta-G solvation = -2814.357709 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.052 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -49.86896 -40.03941 -38.14801 -34.81540 -33.42111 -32.16854 -30.56501 -28.83193 -25.75302 -24.37970 -23.40711 -22.27322 -20.35931 -18.67590 -18.14834 -17.48735 -17.10850 -16.76520 -16.56245 -15.90001 -15.43449 -14.60394 -14.53159 -14.50657 -14.21751 -13.90071 -13.66675 -13.46668 -13.22636 -12.94312 -12.77926 -12.42655 -12.25274 -12.14030 -11.84488 -11.73417 -11.26328 -10.89512 -10.11813 -10.04995 -8.87616 -8.70406 -8.45912 -6.23385 -0.26635 0.27000 0.92932 1.27128 1.38513 1.40794 1.53907 1.87798 2.15296 2.25944 2.76983 3.26367 3.36922 3.78086 3.85125 3.94444 4.29290 4.39364 4.68433 4.78398 4.93318 4.95188 4.96895 5.10055 5.12252 5.23671 5.32322 5.34914 5.49584 5.65691 5.73499 5.92382 6.08870 6.47403 6.84428 6.99464 8.39537 Molecular weight = 262.05amu Principal moments of inertia in cm(-1) A = 0.022468 B = 0.006042 C = 0.004807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.890876 B = 4633.399677 C = 5823.420815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.031 4.031 2 C -0.410 4.410 3 S 0.080 5.920 4 C -0.193 4.193 5 C -0.017 4.017 6 C -0.097 4.097 7 C -0.137 4.137 8 C 0.076 3.924 9 F -0.142 7.142 10 C -0.141 4.141 11 C -0.094 4.094 12 C -0.095 4.095 13 C 0.053 3.947 14 C -0.469 4.469 15 H 0.073 0.927 16 C 0.034 3.966 17 N -0.839 5.839 18 Si 0.983 3.017 19 H -0.261 1.261 20 H -0.269 1.269 21 H -0.265 1.265 22 H 0.046 0.954 23 H 0.054 0.946 24 H 0.048 0.952 25 H 0.140 0.860 26 H 0.164 0.836 27 H 0.156 0.844 28 H 0.128 0.872 29 H 0.140 0.860 30 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.324 6.245 1.483 8.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.527 4.527 3 S 0.344 5.656 4 C -0.309 4.309 5 C -0.019 4.019 6 C -0.116 4.116 7 C -0.155 4.155 8 C 0.056 3.944 9 F -0.121 7.121 10 C -0.159 4.159 11 C -0.114 4.114 12 C -0.129 4.129 13 C 0.043 3.957 14 C -0.503 4.503 15 H 0.091 0.909 16 C -0.179 4.179 17 N -0.467 5.467 18 Si 0.805 3.195 19 H -0.185 1.185 20 H -0.194 1.194 21 H -0.190 1.190 22 H 0.064 0.936 23 H 0.073 0.927 24 H 0.067 0.933 25 H 0.158 0.842 26 H 0.182 0.818 27 H 0.174 0.826 28 H 0.146 0.854 29 H 0.157 0.843 30 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 5.175 7.696 1.374 9.376 hybrid contribution 0.182 -2.521 -0.041 2.528 sum 5.357 5.175 1.333 7.567 Atomic orbital electron populations 1.19649 0.88915 1.00499 0.99901 1.23740 0.99977 0.95882 1.33102 1.81139 0.94730 1.09772 1.79942 1.22779 0.96108 0.96937 1.15044 1.18475 0.90224 0.93802 0.99436 1.21174 0.97766 0.93192 0.99428 1.21211 0.90402 1.01544 1.02377 1.17816 0.79711 0.91912 1.04925 1.91471 1.39873 1.86607 1.94166 1.21186 0.98445 0.93586 1.02710 1.21162 0.91013 1.00318 0.98925 1.21989 0.97539 0.94185 0.99167 1.18100 0.90519 0.93770 0.93283 1.19324 1.00152 0.91093 1.39705 0.90854 1.26652 0.94227 1.05286 0.91740 1.69886 1.12090 1.35227 1.29547 0.85130 0.79366 0.76195 0.78851 1.18507 1.19361 1.18991 0.93575 0.92671 0.93264 0.84230 0.81845 0.82626 0.85434 0.84287 0.90360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.03 -1.28 9.92 71.24 0.71 -0.58 16 2 C -0.41 -19.83 6.39 25.56 0.16 -19.66 16 3 S 0.08 3.35 21.78 -56.49 -1.23 2.11 16 4 C -0.19 -8.58 6.31 23.85 0.15 -8.43 16 5 C -0.02 -0.64 5.87 -20.09 -0.12 -0.76 16 6 C -0.10 -2.99 9.58 22.52 0.22 -2.77 16 7 C -0.14 -3.55 10.01 22.27 0.22 -3.33 16 8 C 0.08 2.06 7.30 22.44 0.16 2.23 16 9 F -0.14 -3.72 17.26 44.97 0.78 -2.95 16 10 C -0.14 -3.97 10.01 22.28 0.22 -3.75 16 11 C -0.09 -3.22 9.52 22.52 0.21 -3.01 16 12 C -0.10 -4.81 8.55 22.88 0.20 -4.61 16 13 C 0.05 2.84 5.67 -21.08 -0.12 2.72 16 14 C -0.47 -25.02 8.64 23.35 0.20 -24.82 16 15 H 0.07 3.83 7.28 -2.91 -0.02 3.81 16 16 C 0.03 1.69 5.38 85.13 0.46 2.15 16 17 N -0.84 -42.55 10.74 21.77 0.23 -42.32 16 18 Si 0.98 38.05 29.57 68.60 2.03 40.08 16 19 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 20 H -0.27 -10.05 7.11 99.48 0.71 -9.34 16 21 H -0.27 -9.83 7.11 99.48 0.71 -9.13 16 22 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 23 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 24 H 0.05 2.10 7.37 -2.39 -0.02 2.08 16 25 H 0.14 3.98 7.23 -2.91 -0.02 3.96 16 26 H 0.16 3.16 8.06 -2.91 -0.02 3.14 16 27 H 0.16 3.57 8.06 -2.91 -0.02 3.55 16 28 H 0.13 4.56 6.72 -2.91 -0.02 4.54 16 29 H 0.14 7.16 5.11 -2.91 -0.01 7.15 16 30 H 0.29 13.12 8.30 -92.70 -0.77 12.35 16 Total: -1.00 -56.75 278.24 5.66 -51.09 By element: Atomic # 1 Polarization: 15.42 SS G_CDS: 1.17 Total: 16.59 kcal Atomic # 6 Polarization: -67.29 SS G_CDS: 2.68 Total: -64.62 kcal Atomic # 7 Polarization: -42.55 SS G_CDS: 0.23 Total: -42.32 kcal Atomic # 9 Polarization: -3.72 SS G_CDS: 0.78 Total: -2.95 kcal Atomic # 14 Polarization: 38.05 SS G_CDS: 2.03 Total: 40.08 kcal Atomic # 16 Polarization: 3.35 SS G_CDS: -1.23 Total: 2.11 kcal Total: -56.75 5.66 -51.09 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000077093869.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.289 kcal (2) G-P(sol) polarization free energy of solvation -56.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds