Wall clock time and date at job start Mon Mar 30 2020 06:11:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 O 1.45203 * 109.47048 * 304.21112 * 3 2 1 5 5 C 1.34714 * 116.99743 * 179.97438 * 4 3 2 6 6 O 1.21462 * 120.00010 * 0.02562 * 5 4 3 7 7 C 1.47744 * 119.99590 * 179.97438 * 5 4 3 8 8 C 1.39722 * 120.11031 * 359.97438 * 7 5 4 9 9 C 1.38022 * 120.03522 * 180.02562 * 8 7 5 10 10 C 1.38186 * 120.24912 * 359.70938 * 9 8 7 11 11 C 1.39188 * 120.21329 * 0.56472 * 10 9 8 12 12 S 1.76194 * 120.01963 * 179.71331 * 11 10 9 13 13 C 1.76196 * 100.00177 * 265.25514 * 12 11 10 14 14 H 1.07999 * 120.00447 * 5.11739 * 13 12 11 15 15 C 1.38736 * 119.99972 * 185.12238 * 13 12 11 16 16 N 1.31617 * 119.99948 * 0.02562 * 15 13 12 17 17 Si 1.86808 * 119.99686 * 179.97438 * 15 13 12 18 18 H 1.48494 * 109.47076 * 59.99906 * 17 15 13 19 19 H 1.48496 * 109.46794 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.46962 * 299.99839 * 17 15 13 21 21 C 1.38862 * 119.96034 * 359.44560 * 11 10 9 22 22 H 4.39840 * 5.48824 * 179.97438 * 4 1 2 23 23 H 1.08997 * 109.47124 * 184.21519 * 3 2 1 24 24 H 1.08997 * 109.47487 * 64.20940 * 3 2 1 25 25 H 1.08002 * 119.98230 * 359.97438 * 8 7 5 26 26 H 1.08000 * 119.87740 * 180.02562 * 9 8 7 27 27 H 1.08000 * 119.89641 * 180.28029 * 10 9 8 28 28 H 0.97004 * 119.99849 * 179.97438 * 16 15 13 29 29 H 1.08005 * 120.12187 * 180.25459 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1303 -0.7688 1.1321 5 6 4.4659 -0.8679 1.2778 6 8 5.2055 -0.3260 0.4812 7 6 5.0309 -1.6348 2.4071 8 6 4.1821 -2.2578 3.3257 9 6 4.7116 -2.9734 4.3804 10 6 6.0810 -3.0824 4.5300 11 6 6.9361 -2.4613 3.6243 12 16 8.6814 -2.5974 3.8241 13 6 9.0035 -1.1142 4.7191 14 1 8.1839 -0.4891 5.0414 15 6 10.3101 -0.7492 5.0097 16 7 11.3090 -1.5107 4.6164 17 14 10.6515 0.8236 5.9579 18 1 9.9947 0.7523 7.2878 19 1 12.1167 0.9854 6.1370 20 1 10.1146 1.9837 5.2021 21 6 6.4130 -1.7390 2.5599 22 1 -1.0498 0.0001 0.0002 23 1 3.0088 1.0257 0.0755 24 1 3.0096 -0.4463 -0.9253 25 1 3.1112 -2.1786 3.2108 26 1 4.0532 -3.4543 5.0887 27 1 6.4892 -3.6476 5.3548 28 1 12.2226 -1.2553 4.8192 29 1 7.0741 -1.2594 1.8533 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079753979.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:34 Heat of formation + Delta-G solvation = -7.267586 kcal Electronic energy + Delta-G solvation = -15763.453922 eV Core-core repulsion = 12937.570646 eV Total energy + Delta-G solvation = -2825.883276 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.045 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.49762 -38.33532 -36.56689 -33.66284 -32.53465 -31.18071 -30.61672 -27.96884 -25.59567 -24.01019 -22.36856 -20.83110 -18.94834 -18.31567 -17.42016 -16.91189 -16.56581 -15.72582 -14.98869 -14.87120 -14.53970 -14.04689 -13.96276 -13.54428 -13.02327 -12.87914 -12.40074 -11.67775 -11.42030 -11.22720 -11.18865 -11.09407 -11.06441 -10.74135 -10.40152 -10.34441 -9.95988 -9.18495 -9.08090 -8.73664 -8.07961 -6.75330 -6.31099 -4.05805 0.95410 1.60589 1.86098 2.43825 2.68620 3.08747 3.19386 3.21596 3.25226 3.42830 3.98553 4.00195 4.20803 4.76610 5.03737 5.04602 5.05323 5.17323 5.29928 5.43863 5.50643 5.65485 5.77686 5.91204 6.16229 6.26154 6.51888 6.60745 6.85563 7.10379 7.17563 7.54809 7.77616 8.29754 9.14622 10.75477 Molecular weight = 262.05amu Principal moments of inertia in cm(-1) A = 0.027355 B = 0.004395 C = 0.004118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.317439 B = 6368.700318 C = 6798.396762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.196 4.196 3 C 0.178 3.822 4 O -0.351 6.351 5 C 0.517 3.483 6 O -0.503 6.503 7 C -0.144 4.144 8 C -0.065 4.065 9 C -0.147 4.147 10 C -0.044 4.044 11 C -0.113 4.113 12 S -0.030 6.030 13 C -0.523 4.523 14 H 0.076 0.924 15 C 0.074 3.926 16 N -0.870 5.870 17 Si 0.921 3.079 18 H -0.273 1.273 19 H -0.282 1.282 20 H -0.273 1.273 21 C -0.013 4.013 22 H 0.225 0.775 23 H 0.097 0.903 24 H 0.097 0.903 25 H 0.131 0.869 26 H 0.127 0.873 27 H 0.134 0.866 28 H 0.271 0.729 29 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.504 0.002 -4.679 18.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.196 4.196 3 C 0.105 3.895 4 O -0.269 6.269 5 C 0.362 3.638 6 O -0.391 6.391 7 C -0.147 4.147 8 C -0.083 4.083 9 C -0.166 4.166 10 C -0.065 4.065 11 C -0.223 4.223 12 S 0.204 5.796 13 C -0.670 4.670 14 H 0.094 0.906 15 C -0.135 4.135 16 N -0.505 5.505 17 Si 0.747 3.253 18 H -0.198 1.198 19 H -0.207 1.207 20 H -0.198 1.198 21 C -0.034 4.034 22 H 0.241 0.759 23 H 0.114 0.886 24 H 0.115 0.885 25 H 0.149 0.851 26 H 0.145 0.855 27 H 0.152 0.848 28 H 0.080 0.920 29 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -16.281 -0.668 -5.289 17.131 hybrid contribution -0.863 2.048 0.797 2.361 sum -17.144 1.379 -4.492 17.776 Atomic orbital electron populations 1.24984 0.95801 0.99349 0.97827 1.22325 0.93532 1.01533 1.02249 1.19450 0.84349 0.97022 0.88645 1.86584 1.24772 1.67735 1.47804 1.21341 0.79640 0.78126 0.84696 1.90847 1.60073 1.44723 1.43491 1.19081 0.94195 1.04957 0.96490 1.21364 0.99465 0.94476 0.93039 1.21141 0.95438 1.01306 0.98758 1.22063 0.92633 0.95022 0.96750 1.22826 1.03773 0.99543 0.96172 1.83635 0.90325 1.32050 1.73571 1.22809 0.95161 1.08880 1.40164 0.90609 1.25006 0.94965 0.97798 0.95765 1.69973 0.99449 1.37252 1.43797 0.86170 0.77365 0.81812 0.79937 1.19792 1.20708 1.19803 1.21986 0.92345 0.93137 0.95951 0.75856 0.88550 0.88549 0.85147 0.85492 0.84787 0.91955 0.84059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.37 19.25 29.55 0.57 -0.80 15 2 C -0.20 -2.09 13.74 -37.12 -0.51 -2.60 15 3 C 0.18 2.03 5.95 34.37 0.20 2.23 15 4 O -0.35 -4.91 9.43 -40.53 -0.38 -5.30 15 5 C 0.52 8.49 7.90 34.62 0.27 8.76 15 6 O -0.50 -9.33 16.13 -19.24 -0.31 -9.64 15 7 C -0.14 -2.47 5.87 -105.01 -0.62 -3.09 15 8 C -0.06 -0.95 9.62 -39.11 -0.38 -1.32 15 9 C -0.15 -2.12 10.02 -39.68 -0.40 -2.51 15 10 C -0.04 -0.77 9.79 -39.25 -0.38 -1.15 15 11 C -0.11 -2.36 5.45 -39.00 -0.21 -2.57 15 12 S -0.03 -0.77 21.40 -107.50 -2.30 -3.07 15 13 C -0.52 -14.56 9.46 30.92 0.29 -14.27 15 14 H 0.08 2.08 7.79 -52.49 -0.41 1.68 15 15 C 0.07 2.05 5.49 -17.46 -0.10 1.95 15 16 N -0.87 -25.15 13.22 55.49 0.73 -24.42 15 17 Si 0.92 21.24 29.55 -169.99 -5.02 16.22 15 18 H -0.27 -6.15 7.11 56.52 0.40 -5.74 15 19 H -0.28 -6.34 7.11 56.52 0.40 -5.94 15 20 H -0.27 -6.24 7.11 56.52 0.40 -5.84 15 21 C -0.01 -0.26 9.34 -38.90 -0.36 -0.62 15 22 H 0.22 0.96 7.80 -54.10 -0.42 0.53 15 23 H 0.10 1.02 8.14 -51.93 -0.42 0.59 15 24 H 0.10 0.99 8.14 -51.93 -0.42 0.57 15 25 H 0.13 1.58 7.60 -52.49 -0.40 1.18 15 26 H 0.13 1.40 8.06 -52.49 -0.42 0.98 15 27 H 0.13 2.21 8.06 -52.49 -0.42 1.78 15 28 H 0.27 7.32 8.31 -40.82 -0.34 6.98 15 29 H 0.14 2.97 7.65 -52.48 -0.40 2.57 15 LS Contribution 294.48 15.07 4.44 4.44 Total: -1.00 -31.50 294.48 -6.92 -38.42 By element: Atomic # 1 Polarization: 1.80 SS G_CDS: -2.46 Total: -0.66 kcal Atomic # 6 Polarization: -14.37 SS G_CDS: -1.62 Total: -15.98 kcal Atomic # 7 Polarization: -25.15 SS G_CDS: 0.73 Total: -24.42 kcal Atomic # 8 Polarization: -14.25 SS G_CDS: -0.69 Total: -14.94 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 16 Polarization: -0.77 SS G_CDS: -2.30 Total: -3.07 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -31.50 -6.92 -38.42 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079753979.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.151 kcal (2) G-P(sol) polarization free energy of solvation -31.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds