Wall clock time and date at job start Mon Mar 30 2020 06:11:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 O 1.45203 * 109.47048 * 304.21112 * 3 2 1 5 5 C 1.34714 * 116.99743 * 179.97438 * 4 3 2 6 6 O 1.21462 * 120.00010 * 0.02562 * 5 4 3 7 7 C 1.47744 * 119.99590 * 179.97438 * 5 4 3 8 8 C 1.39722 * 120.11031 * 359.97438 * 7 5 4 9 9 C 1.38022 * 120.03522 * 180.02562 * 8 7 5 10 10 C 1.38186 * 120.24912 * 359.70938 * 9 8 7 11 11 C 1.39188 * 120.21329 * 0.56472 * 10 9 8 12 12 S 1.76194 * 120.01963 * 179.71331 * 11 10 9 13 13 C 1.76196 * 100.00177 * 265.25514 * 12 11 10 14 14 H 1.07999 * 120.00447 * 5.11739 * 13 12 11 15 15 C 1.38736 * 119.99972 * 185.12238 * 13 12 11 16 16 N 1.31617 * 119.99948 * 0.02562 * 15 13 12 17 17 Si 1.86808 * 119.99686 * 179.97438 * 15 13 12 18 18 H 1.48494 * 109.47076 * 59.99906 * 17 15 13 19 19 H 1.48496 * 109.46794 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.46962 * 299.99839 * 17 15 13 21 21 C 1.38862 * 119.96034 * 359.44560 * 11 10 9 22 22 H 4.39840 * 5.48824 * 179.97438 * 4 1 2 23 23 H 1.08997 * 109.47124 * 184.21519 * 3 2 1 24 24 H 1.08997 * 109.47487 * 64.20940 * 3 2 1 25 25 H 1.08002 * 119.98230 * 359.97438 * 8 7 5 26 26 H 1.08000 * 119.87740 * 180.02562 * 9 8 7 27 27 H 1.08000 * 119.89641 * 180.28029 * 10 9 8 28 28 H 0.97004 * 119.99849 * 179.97438 * 16 15 13 29 29 H 1.08005 * 120.12187 * 180.25459 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1303 -0.7688 1.1321 5 6 4.4659 -0.8679 1.2778 6 8 5.2055 -0.3260 0.4812 7 6 5.0309 -1.6348 2.4071 8 6 4.1821 -2.2578 3.3257 9 6 4.7116 -2.9734 4.3804 10 6 6.0810 -3.0824 4.5300 11 6 6.9361 -2.4613 3.6243 12 16 8.6814 -2.5974 3.8241 13 6 9.0035 -1.1142 4.7191 14 1 8.1839 -0.4891 5.0414 15 6 10.3101 -0.7492 5.0097 16 7 11.3090 -1.5107 4.6164 17 14 10.6515 0.8236 5.9579 18 1 9.9947 0.7523 7.2878 19 1 12.1167 0.9854 6.1370 20 1 10.1146 1.9837 5.2021 21 6 6.4130 -1.7390 2.5599 22 1 -1.0498 0.0001 0.0002 23 1 3.0088 1.0257 0.0755 24 1 3.0096 -0.4463 -0.9253 25 1 3.1112 -2.1786 3.2108 26 1 4.0532 -3.4543 5.0887 27 1 6.4892 -3.6476 5.3548 28 1 12.2226 -1.2553 4.8192 29 1 7.0741 -1.2594 1.8533 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079753979.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:34 Heat of formation + Delta-G solvation = -24.758890 kcal Electronic energy + Delta-G solvation = -15764.212401 eV Core-core repulsion = 12937.570646 eV Total energy + Delta-G solvation = -2826.641756 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.045 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.75130 -39.66319 -37.79200 -34.65040 -34.44564 -32.51260 -31.99717 -28.88543 -27.73684 -25.29895 -23.76089 -22.11394 -20.13378 -19.64211 -19.01998 -18.11907 -17.69169 -16.97789 -16.92288 -16.43013 -15.91768 -15.28781 -15.08066 -14.87546 -14.64493 -13.99611 -13.89023 -13.26797 -13.12765 -12.95764 -12.71509 -12.47023 -12.41853 -11.98401 -11.77012 -11.53980 -11.21460 -11.15347 -10.80964 -10.08944 -9.75238 -8.81157 -8.39029 -6.19290 -0.39698 0.19350 0.91547 1.28365 1.38126 1.39547 1.46564 1.65998 1.74324 2.19036 2.25290 2.68040 2.94276 3.24022 3.40764 3.67824 3.88966 4.04828 4.11636 4.18901 4.31403 4.40938 4.62019 4.84687 4.89007 5.09114 5.17068 5.30406 5.38806 5.44241 5.78756 6.15950 6.48978 6.53414 7.01539 8.67665 Molecular weight = 262.05amu Principal moments of inertia in cm(-1) A = 0.027355 B = 0.004395 C = 0.004118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.317439 B = 6368.700318 C = 6798.396762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.253 4.253 3 C 0.174 3.826 4 O -0.344 6.344 5 C 0.523 3.477 6 O -0.533 6.533 7 C -0.149 4.149 8 C -0.043 4.043 9 C -0.125 4.125 10 C -0.048 4.048 11 C -0.134 4.134 12 S -0.086 6.086 13 C -0.539 4.539 14 H 0.069 0.931 15 C 0.021 3.979 16 N -0.905 5.905 17 Si 0.991 3.009 18 H -0.261 1.261 19 H -0.272 1.272 20 H -0.270 1.270 21 C -0.033 4.033 22 H 0.264 0.736 23 H 0.099 0.901 24 H 0.101 0.899 25 H 0.169 0.831 26 H 0.177 0.823 27 H 0.142 0.858 28 H 0.274 0.726 29 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.116 0.375 -3.679 21.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.253 4.253 3 C 0.102 3.898 4 O -0.261 6.261 5 C 0.369 3.631 6 O -0.424 6.424 7 C -0.152 4.152 8 C -0.061 4.061 9 C -0.144 4.144 10 C -0.068 4.068 11 C -0.245 4.245 12 S 0.149 5.851 13 C -0.687 4.687 14 H 0.087 0.913 15 C -0.185 4.185 16 N -0.541 5.541 17 Si 0.813 3.187 18 H -0.186 1.186 19 H -0.196 1.196 20 H -0.195 1.195 21 C -0.054 4.054 22 H 0.280 0.720 23 H 0.117 0.883 24 H 0.119 0.881 25 H 0.186 0.814 26 H 0.195 0.805 27 H 0.160 0.840 28 H 0.083 0.917 29 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -19.919 -0.309 -4.292 20.379 hybrid contribution -0.009 1.887 0.414 1.932 sum -19.928 1.577 -3.878 20.363 Atomic orbital electron populations 1.25949 0.96531 0.96486 0.94867 1.22405 0.93767 1.04180 1.04941 1.19598 0.85532 0.96839 0.87845 1.86540 1.22872 1.67842 1.48887 1.21197 0.80342 0.77479 0.84060 1.90835 1.61038 1.45979 1.44543 1.19137 0.93203 1.05383 0.97520 1.21818 1.00897 0.92041 0.91378 1.21592 0.94204 0.99745 0.98881 1.22194 0.93947 0.94548 0.96134 1.22494 1.00812 1.02699 0.98457 1.83521 0.95906 1.31853 1.73806 1.23062 0.95444 1.09510 1.40637 0.91284 1.25991 0.94616 1.01238 0.96638 1.70093 0.99876 1.39102 1.45028 0.85114 0.77679 0.77249 0.78706 1.18577 1.19633 1.19547 1.21683 0.93714 0.94179 0.95813 0.72000 0.88341 0.88074 0.81372 0.80523 0.84048 0.91673 0.86831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.60 19.25 74.32 1.43 -0.17 15 2 C -0.25 -4.82 13.74 31.13 0.43 -4.39 15 3 C 0.17 3.81 5.95 70.18 0.42 4.23 15 4 O -0.34 -9.08 9.43 -56.24 -0.53 -9.61 15 5 C 0.52 16.98 7.90 70.34 0.56 17.53 15 6 O -0.53 -20.34 16.13 19.96 0.32 -20.02 15 7 C -0.15 -4.99 5.87 -20.12 -0.12 -5.11 15 8 C -0.04 -1.10 9.62 22.58 0.22 -0.89 15 9 C -0.13 -3.10 10.02 22.21 0.22 -2.87 15 10 C -0.05 -1.61 9.79 22.49 0.22 -1.39 15 11 C -0.13 -5.75 5.45 22.65 0.12 -5.62 15 12 S -0.09 -4.58 21.40 -56.49 -1.21 -5.78 15 13 C -0.54 -31.13 9.46 67.94 0.64 -30.49 15 14 H 0.07 3.93 7.79 -2.91 -0.02 3.90 15 15 C 0.02 1.17 5.49 84.84 0.47 1.64 15 16 N -0.90 -53.93 13.22 21.64 0.29 -53.64 15 17 Si 0.99 44.09 29.55 68.60 2.03 46.12 15 18 H -0.26 -11.05 7.11 99.48 0.71 -10.34 15 19 H -0.27 -11.53 7.11 99.48 0.71 -10.82 15 20 H -0.27 -11.82 7.11 99.48 0.71 -11.11 15 21 C -0.03 -1.35 9.34 22.71 0.21 -1.14 15 22 H 0.26 0.87 7.80 -4.43 -0.03 0.83 15 23 H 0.10 2.05 8.14 -2.39 -0.02 2.03 15 24 H 0.10 2.05 8.14 -2.39 -0.02 2.03 15 25 H 0.17 3.12 7.60 -2.91 -0.02 3.10 15 26 H 0.18 2.74 8.06 -2.91 -0.02 2.72 15 27 H 0.14 4.51 8.06 -2.91 -0.02 4.48 15 28 H 0.27 15.19 8.31 -92.71 -0.77 14.41 15 29 H 0.11 5.20 7.65 -2.91 -0.02 5.17 15 Total: -1.00 -72.08 294.48 6.88 -65.21 By element: Atomic # 1 Polarization: 5.25 SS G_CDS: 1.16 Total: 6.41 kcal Atomic # 6 Polarization: -33.49 SS G_CDS: 4.82 Total: -28.67 kcal Atomic # 7 Polarization: -53.93 SS G_CDS: 0.29 Total: -53.64 kcal Atomic # 8 Polarization: -29.42 SS G_CDS: -0.21 Total: -29.63 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Atomic # 16 Polarization: -4.58 SS G_CDS: -1.21 Total: -5.78 kcal Total: -72.08 6.88 -65.21 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079753979.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.447 kcal (2) G-P(sol) polarization free energy of solvation -72.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds