Wall clock time and date at job start Mon Mar 30 2020 06:32:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31336 * 1 3 3 Si 1.86801 * 119.99813 * 2 1 4 4 H 1.48500 * 109.47091 * 240.00051 * 3 2 1 5 5 H 1.48501 * 109.47089 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46779 * 120.00048 * 3 2 1 7 7 C 1.38937 * 119.99948 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99695 * 179.97438 * 7 2 1 9 9 N 1.37563 * 119.99921 * 359.97438 * 7 2 1 10 10 C 1.37295 * 126.51661 * 0.12751 * 9 7 2 11 11 C 1.34627 * 106.83595 * 180.27107 * 10 9 7 12 12 N 1.34246 * 108.27638 * 359.76080 * 11 10 9 13 13 C 1.30481 * 109.40379 * 0.02562 * 12 11 10 14 14 C 1.50703 * 125.74276 * 179.97438 * 13 12 11 15 15 C 1.50699 * 109.47055 * 90.02664 * 14 13 12 16 16 C 1.38264 * 119.99683 * 89.99694 * 15 14 13 17 17 C 1.38220 * 120.02583 * 179.97438 * 16 15 14 18 18 C 1.38232 * 120.01498 * 0.02562 * 17 16 15 19 19 C 1.38335 * 119.98779 * 359.97438 * 18 17 16 20 20 Cl 1.73595 * 120.01468 * 179.72696 * 19 18 17 21 21 C 1.38189 * 119.99118 * 269.99284 * 15 14 13 22 22 H 0.97006 * 119.99814 * 359.97438 * 1 2 3 23 23 H 1.08002 * 126.57865 * 0.02562 * 10 9 7 24 24 H 1.07995 * 125.86708 * 179.76300 * 11 10 9 25 25 H 1.08997 * 109.47633 * 330.02275 * 14 13 12 26 26 H 1.09003 * 109.47060 * 210.02185 * 14 13 12 27 27 H 1.08001 * 119.98449 * 359.97438 * 16 15 14 28 28 H 1.08002 * 119.99055 * 179.97438 * 17 16 15 29 29 H 1.08002 * 120.00683 * 180.02562 * 18 17 16 30 30 H 1.08001 * 120.01014 * 359.97438 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3134 0.0000 0.0000 3 14 2.2473 1.6178 0.0000 4 1 3.1010 1.6965 -1.2125 5 1 1.2823 2.7465 0.0006 6 1 3.1010 1.6964 1.2125 7 6 2.0080 -1.2032 -0.0005 8 1 3.0880 -1.2032 -0.0010 9 7 1.3202 -2.3945 -0.0005 10 6 -0.0439 -2.5503 -0.0025 11 6 -0.2851 -3.8748 0.0044 12 7 0.8936 -4.5174 0.0051 13 6 1.8633 -3.6443 -0.0005 14 6 3.3359 -3.9643 -0.0012 15 6 3.8248 -4.0771 -1.4223 16 6 4.3032 -2.9587 -2.0795 17 6 4.7522 -3.0616 -3.3827 18 6 4.7227 -4.2827 -4.0299 19 6 4.2442 -5.4021 -3.3728 20 17 4.2002 -6.9345 -4.1873 21 6 3.7949 -5.2984 -2.0681 22 1 -0.4850 0.8401 0.0004 23 1 -0.7817 -1.7617 -0.0047 24 1 -1.2595 -4.3405 0.0086 25 1 3.5029 -4.9088 0.5165 26 1 3.8807 -3.1695 0.5083 27 1 4.3261 -2.0044 -1.5744 28 1 5.1254 -2.1876 -3.8957 29 1 5.0740 -4.3631 -5.0480 30 1 3.4216 -6.1721 -1.5546 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082738916.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:38 Heat of formation + Delta-G solvation = 64.541382 kcal Electronic energy + Delta-G solvation = -16785.975056 eV Core-core repulsion = 13993.454695 eV Total energy + Delta-G solvation = -2792.520361 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.057 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.41408 -38.93383 -36.28126 -34.02757 -32.88950 -30.86632 -30.39172 -28.55917 -25.81976 -24.93783 -22.37989 -21.38591 -20.19621 -18.97258 -17.54566 -16.64331 -15.55980 -15.18908 -15.16242 -14.44590 -13.93177 -13.48680 -13.29963 -12.89191 -12.64029 -12.51429 -11.92799 -11.91007 -11.52978 -11.40573 -11.22641 -11.08134 -10.97355 -10.71189 -10.65633 -10.58664 -9.74488 -8.59901 -8.46989 -8.37710 -8.35627 -6.80815 -6.75763 -4.54163 1.46872 1.57559 2.33471 2.88224 2.95346 2.98484 3.67970 3.73320 3.95668 4.55870 4.85335 4.99390 5.08944 5.15885 5.44162 5.57644 5.62606 5.76548 5.91843 6.15005 6.21877 6.30782 6.48669 6.62398 6.77945 6.85059 6.92346 7.04511 7.12701 7.48589 7.57432 8.24043 8.45086 8.75551 9.41772 9.73216 10.18850 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.022816 B = 0.006332 C = 0.005334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.915276 B = 4420.707757 C = 5247.840981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.841 5.841 2 C 0.042 3.958 3 Si 0.941 3.059 4 H -0.266 1.266 5 H -0.276 1.276 6 H -0.266 1.266 7 C -0.332 4.332 8 H 0.109 0.891 9 N -0.260 5.260 10 C -0.051 4.051 11 C -0.104 4.104 12 N -0.509 5.509 13 C 0.094 3.906 14 C 0.027 3.973 15 C -0.048 4.048 16 C -0.102 4.102 17 C -0.111 4.111 18 C -0.124 4.124 19 C -0.036 4.036 20 Cl -0.085 7.085 21 C -0.096 4.096 22 H 0.279 0.721 23 H 0.193 0.807 24 H 0.140 0.860 25 H 0.085 0.915 26 H 0.080 0.920 27 H 0.131 0.869 28 H 0.127 0.873 29 H 0.126 0.874 30 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.527 -2.679 -4.712 10.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C -0.167 4.167 3 Si 0.765 3.235 4 H -0.191 1.191 5 H -0.201 1.201 6 H -0.191 1.191 7 C -0.462 4.462 8 H 0.126 0.874 9 N 0.074 4.926 10 C -0.194 4.194 11 C -0.256 4.256 12 N -0.230 5.230 13 C -0.162 4.162 14 C -0.012 4.012 15 C -0.049 4.049 16 C -0.120 4.120 17 C -0.129 4.129 18 C -0.142 4.142 19 C -0.063 4.063 20 Cl -0.056 7.056 21 C -0.115 4.115 22 H 0.091 0.909 23 H 0.209 0.791 24 H 0.158 0.842 25 H 0.104 0.896 26 H 0.098 0.902 27 H 0.149 0.851 28 H 0.145 0.855 29 H 0.144 0.856 30 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 8.594 -3.368 -4.770 10.390 hybrid contribution -0.066 1.596 -0.185 1.608 sum 8.529 -1.772 -4.955 10.021 Atomic orbital electron populations 1.69724 1.06457 1.28606 1.42457 1.25523 0.95722 1.00691 0.94764 0.85756 0.79060 0.79110 0.79552 1.19096 1.20095 1.19107 1.19894 0.92638 0.81700 1.51939 0.87362 1.41570 1.05671 1.05010 1.40356 1.23624 0.85752 0.98239 1.11805 1.21775 0.95626 0.91624 1.16610 1.69729 0.98255 1.33030 1.22018 1.22151 0.94389 0.81226 1.18458 1.18523 0.88610 1.02492 0.91615 1.19911 0.95698 0.92295 0.97024 1.21289 0.97280 0.98692 0.94758 1.21035 1.00192 0.96760 0.94936 1.20916 1.01625 0.91640 1.00055 1.20841 1.04776 0.86698 0.93941 1.98337 1.97369 1.30557 1.79349 1.20950 0.99024 0.98726 0.92752 0.90944 0.79063 0.84193 0.89631 0.90159 0.85141 0.85500 0.85633 0.84898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -21.10 10.19 55.49 0.57 -20.54 16 2 C 0.04 1.02 5.48 -17.50 -0.10 0.92 16 3 Si 0.94 18.06 29.55 -169.99 -5.02 13.04 16 4 H -0.27 -4.97 7.11 56.52 0.40 -4.57 16 5 H -0.28 -5.27 7.11 56.52 0.40 -4.87 16 6 H -0.27 -5.00 7.11 56.52 0.40 -4.60 16 7 C -0.33 -8.20 9.92 -14.72 -0.15 -8.34 16 8 H 0.11 2.42 6.15 -52.49 -0.32 2.10 16 9 N -0.26 -6.76 2.93 -58.88 -0.17 -6.93 16 10 C -0.05 -1.34 10.40 -16.38 -0.17 -1.51 16 11 C -0.10 -2.63 11.85 -17.77 -0.21 -2.84 16 12 N -0.51 -12.99 11.24 -10.52 -0.12 -13.10 16 13 C 0.09 2.27 7.14 -154.30 -1.10 1.17 16 14 C 0.03 0.51 5.60 -29.03 -0.16 0.35 16 15 C -0.05 -0.86 5.11 -104.63 -0.54 -1.40 16 16 C -0.10 -1.71 9.70 -39.58 -0.38 -2.09 16 17 C -0.11 -1.62 10.05 -39.59 -0.40 -2.02 16 18 C -0.12 -1.78 9.83 -39.55 -0.39 -2.17 16 19 C -0.04 -0.57 6.32 -39.49 -0.25 -0.82 16 20 Cl -0.08 -1.19 28.96 -51.86 -1.50 -2.69 16 21 C -0.10 -1.64 9.49 -39.55 -0.38 -2.01 16 22 H 0.28 6.49 8.31 -40.82 -0.34 6.15 16 23 H 0.19 5.12 5.59 -52.49 -0.29 4.83 16 24 H 0.14 3.13 8.06 -52.49 -0.42 2.70 16 25 H 0.09 1.50 8.08 -51.93 -0.42 1.08 16 26 H 0.08 1.44 7.30 -51.93 -0.38 1.06 16 27 H 0.13 2.15 7.14 -52.49 -0.37 1.78 16 28 H 0.13 1.52 8.06 -52.49 -0.42 1.09 16 29 H 0.13 1.50 8.06 -52.49 -0.42 1.08 16 30 H 0.13 2.23 8.06 -52.49 -0.42 1.81 16 LS Contribution 279.88 15.07 4.22 4.22 Total: -1.00 -28.28 279.88 -8.87 -37.14 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: -2.62 Total: 9.63 kcal Atomic # 6 Polarization: -16.55 SS G_CDS: -4.22 Total: -20.77 kcal Atomic # 7 Polarization: -40.84 SS G_CDS: 0.27 Total: -40.57 kcal Atomic # 14 Polarization: 18.06 SS G_CDS: -5.02 Total: 13.04 kcal Atomic # 17 Polarization: -1.19 SS G_CDS: -1.50 Total: -2.69 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -28.28 -8.87 -37.14 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082738916.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.685 kcal (2) G-P(sol) polarization free energy of solvation -28.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.143 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds