Wall clock time and date at job start Mon Mar 30 2020 06:32:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31336 * 1 3 3 Si 1.86801 * 119.99813 * 2 1 4 4 H 1.48500 * 109.47091 * 240.00051 * 3 2 1 5 5 H 1.48501 * 109.47089 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46779 * 120.00048 * 3 2 1 7 7 C 1.38937 * 119.99948 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99695 * 179.97438 * 7 2 1 9 9 N 1.37563 * 119.99921 * 359.97438 * 7 2 1 10 10 C 1.37295 * 126.51661 * 0.12751 * 9 7 2 11 11 C 1.34627 * 106.83595 * 180.27107 * 10 9 7 12 12 N 1.34246 * 108.27638 * 359.76080 * 11 10 9 13 13 C 1.30481 * 109.40379 * 0.02562 * 12 11 10 14 14 C 1.50703 * 125.74276 * 179.97438 * 13 12 11 15 15 C 1.50699 * 109.47055 * 90.02664 * 14 13 12 16 16 C 1.38264 * 119.99683 * 89.99694 * 15 14 13 17 17 C 1.38220 * 120.02583 * 179.97438 * 16 15 14 18 18 C 1.38232 * 120.01498 * 0.02562 * 17 16 15 19 19 C 1.38335 * 119.98779 * 359.97438 * 18 17 16 20 20 Cl 1.73595 * 120.01468 * 179.72696 * 19 18 17 21 21 C 1.38189 * 119.99118 * 269.99284 * 15 14 13 22 22 H 0.97006 * 119.99814 * 359.97438 * 1 2 3 23 23 H 1.08002 * 126.57865 * 0.02562 * 10 9 7 24 24 H 1.07995 * 125.86708 * 179.76300 * 11 10 9 25 25 H 1.08997 * 109.47633 * 330.02275 * 14 13 12 26 26 H 1.09003 * 109.47060 * 210.02185 * 14 13 12 27 27 H 1.08001 * 119.98449 * 359.97438 * 16 15 14 28 28 H 1.08002 * 119.99055 * 179.97438 * 17 16 15 29 29 H 1.08002 * 120.00683 * 180.02562 * 18 17 16 30 30 H 1.08001 * 120.01014 * 359.97438 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3134 0.0000 0.0000 3 14 2.2473 1.6178 0.0000 4 1 3.1010 1.6965 -1.2125 5 1 1.2823 2.7465 0.0006 6 1 3.1010 1.6964 1.2125 7 6 2.0080 -1.2032 -0.0005 8 1 3.0880 -1.2032 -0.0010 9 7 1.3202 -2.3945 -0.0005 10 6 -0.0439 -2.5503 -0.0025 11 6 -0.2851 -3.8748 0.0044 12 7 0.8936 -4.5174 0.0051 13 6 1.8633 -3.6443 -0.0005 14 6 3.3359 -3.9643 -0.0012 15 6 3.8248 -4.0771 -1.4223 16 6 4.3032 -2.9587 -2.0795 17 6 4.7522 -3.0616 -3.3827 18 6 4.7227 -4.2827 -4.0299 19 6 4.2442 -5.4021 -3.3728 20 17 4.2002 -6.9345 -4.1873 21 6 3.7949 -5.2984 -2.0681 22 1 -0.4850 0.8401 0.0004 23 1 -0.7817 -1.7617 -0.0047 24 1 -1.2595 -4.3405 0.0086 25 1 3.5029 -4.9088 0.5165 26 1 3.8807 -3.1695 0.5083 27 1 4.3261 -2.0044 -1.5744 28 1 5.1254 -2.1876 -3.8957 29 1 5.0740 -4.3631 -5.0480 30 1 3.4216 -6.1721 -1.5546 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082738916.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:38 Heat of formation + Delta-G solvation = 51.537781 kcal Electronic energy + Delta-G solvation = -16786.538935 eV Core-core repulsion = 13993.454695 eV Total energy + Delta-G solvation = -2793.084239 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.057 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.29341 -40.19425 -37.44687 -35.88521 -34.29335 -32.74159 -31.63752 -30.16008 -27.57847 -26.70354 -23.61233 -22.72149 -22.10959 -20.80792 -19.35562 -17.94438 -17.31975 -16.48391 -16.43629 -16.04115 -15.62761 -14.86533 -14.70897 -14.53130 -14.23593 -13.98664 -13.65090 -13.60874 -12.98683 -12.93098 -12.79419 -12.40594 -12.29252 -12.19252 -12.11208 -11.77850 -11.50789 -10.43104 -10.28767 -9.83405 -9.60367 -8.75818 -8.57398 -6.44416 0.23055 0.34391 1.15323 1.34174 1.39310 1.53376 1.89171 2.12590 2.57089 2.71588 3.04612 3.20180 3.85105 3.91810 4.04795 4.19726 4.34200 4.40478 4.56355 4.76243 4.80521 4.91820 5.02610 5.08873 5.14446 5.27686 5.40631 5.51874 5.64461 5.67040 5.89311 6.34727 6.51415 6.87310 7.53260 7.79789 8.39255 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.022816 B = 0.006332 C = 0.005334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.915276 B = 4420.707757 C = 5247.840981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.872 5.872 2 C -0.002 4.002 3 Si 1.014 2.986 4 H -0.253 1.253 5 H -0.276 1.276 6 H -0.257 1.257 7 C -0.357 4.357 8 H 0.127 0.873 9 N -0.272 5.272 10 C -0.083 4.083 11 C -0.114 4.114 12 N -0.530 5.530 13 C 0.092 3.908 14 C 0.029 3.971 15 C -0.066 4.066 16 C -0.115 4.115 17 C -0.106 4.106 18 C -0.117 4.117 19 C -0.044 4.044 20 Cl -0.073 7.073 21 C -0.109 4.109 22 H 0.284 0.716 23 H 0.184 0.816 24 H 0.160 0.840 25 H 0.096 0.904 26 H 0.090 0.910 27 H 0.130 0.870 28 H 0.159 0.841 29 H 0.155 0.845 30 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.421 -1.745 -5.863 12.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.208 4.208 3 Si 0.833 3.167 4 H -0.177 1.177 5 H -0.201 1.201 6 H -0.181 1.181 7 C -0.486 4.486 8 H 0.144 0.856 9 N 0.062 4.938 10 C -0.226 4.226 11 C -0.266 4.266 12 N -0.252 5.252 13 C -0.164 4.164 14 C -0.010 4.010 15 C -0.067 4.067 16 C -0.133 4.133 17 C -0.124 4.124 18 C -0.136 4.136 19 C -0.071 4.071 20 Cl -0.044 7.044 21 C -0.128 4.128 22 H 0.095 0.905 23 H 0.200 0.800 24 H 0.178 0.822 25 H 0.114 0.886 26 H 0.108 0.892 27 H 0.148 0.852 28 H 0.176 0.824 29 H 0.172 0.828 30 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 10.482 -2.458 -5.920 12.286 hybrid contribution -0.661 1.248 0.132 1.418 sum 9.821 -1.210 -5.787 11.464 Atomic orbital electron populations 1.69832 1.08110 1.29742 1.42710 1.26635 0.96502 1.04119 0.93524 0.84682 0.77753 0.73997 0.80237 1.17686 1.20068 1.18128 1.20467 0.93696 0.81759 1.52656 0.85565 1.41857 1.05601 1.06001 1.40344 1.23673 0.86461 0.98536 1.13918 1.22155 0.96647 0.91525 1.16264 1.69755 0.98639 1.33598 1.23172 1.23071 0.96258 0.80632 1.16480 1.18630 0.85720 1.03303 0.93314 1.19802 0.97308 0.93240 0.96400 1.21422 0.97784 0.98229 0.95864 1.21389 0.98961 0.98011 0.94056 1.21290 1.00202 0.90941 1.01163 1.20983 1.04606 0.87815 0.93647 1.98340 1.97306 1.29835 1.78889 1.20970 0.99776 0.98389 0.93650 0.90549 0.79977 0.82243 0.88576 0.89159 0.85200 0.82373 0.82761 0.85473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -44.20 10.19 21.65 0.22 -43.98 16 2 C 0.00 -0.08 5.48 84.93 0.47 0.38 16 3 Si 1.01 35.74 29.55 68.60 2.03 37.77 16 4 H -0.25 -8.34 7.11 99.48 0.71 -7.64 16 5 H -0.28 -9.62 7.11 99.48 0.71 -8.92 16 6 H -0.26 -8.64 7.11 99.48 0.71 -7.94 16 7 C -0.36 -17.53 9.92 83.96 0.83 -16.70 16 8 H 0.13 5.52 6.15 -2.91 -0.02 5.50 16 9 N -0.27 -14.31 2.93 -340.18 -1.00 -15.31 16 10 C -0.08 -4.50 10.40 83.01 0.86 -3.63 16 11 C -0.11 -5.88 11.85 83.50 0.99 -4.89 16 12 N -0.53 -27.41 11.24 -187.21 -2.11 -29.52 16 13 C 0.09 4.51 7.14 137.74 0.98 5.49 16 14 C 0.03 1.11 5.60 29.10 0.16 1.28 16 15 C -0.07 -2.32 5.11 -19.87 -0.10 -2.42 16 16 C -0.11 -3.66 9.70 22.27 0.22 -3.44 16 17 C -0.11 -2.79 10.05 22.26 0.22 -2.57 16 18 C -0.12 -3.03 9.83 22.29 0.22 -2.81 16 19 C -0.04 -1.30 6.32 22.33 0.14 -1.16 16 20 Cl -0.07 -1.91 28.96 -2.72 -0.08 -1.99 16 21 C -0.11 -3.65 9.49 22.29 0.21 -3.44 16 22 H 0.28 13.26 8.31 -92.70 -0.77 12.49 16 23 H 0.18 10.14 5.59 -2.91 -0.02 10.12 16 24 H 0.16 7.25 8.06 -2.91 -0.02 7.23 16 25 H 0.10 3.37 8.08 -2.39 -0.02 3.35 16 26 H 0.09 3.18 7.30 -2.39 -0.02 3.17 16 27 H 0.13 4.07 7.14 -2.91 -0.02 4.05 16 28 H 0.16 3.12 8.06 -2.91 -0.02 3.09 16 29 H 0.15 3.06 8.06 -2.91 -0.02 3.04 16 30 H 0.13 4.28 8.06 -2.91 -0.02 4.25 16 Total: -1.00 -60.58 279.88 5.44 -55.14 By element: Atomic # 1 Polarization: 30.64 SS G_CDS: 1.17 Total: 31.81 kcal Atomic # 6 Polarization: -39.12 SS G_CDS: 5.21 Total: -33.91 kcal Atomic # 7 Polarization: -85.93 SS G_CDS: -2.88 Total: -88.81 kcal Atomic # 14 Polarization: 35.74 SS G_CDS: 2.03 Total: 37.77 kcal Atomic # 17 Polarization: -1.91 SS G_CDS: -0.08 Total: -1.99 kcal Total: -60.58 5.44 -55.14 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082738916.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.680 kcal (2) G-P(sol) polarization free energy of solvation -60.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.142 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds