Wall clock time and date at job start Mon Mar 30 2020 06:31:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31333 * 1 3 3 Si 1.86805 * 119.99708 * 2 1 4 4 H 1.48491 * 109.47333 * 269.07889 * 3 2 1 5 5 H 1.48504 * 109.47077 * 29.08089 * 3 2 1 6 6 H 1.48506 * 109.46587 * 149.07505 * 3 2 1 7 7 C 1.38928 * 120.00105 * 180.02562 * 2 1 3 8 8 H 1.08008 * 120.00081 * 190.16368 * 7 2 1 9 9 N 1.37562 * 120.00322 * 10.16526 * 7 2 1 10 10 C 1.37289 * 126.50946 * 18.31953 * 9 7 2 11 11 C 1.34639 * 106.83229 * 180.02562 * 10 9 7 12 12 N 1.34251 * 108.27954 * 359.78474 * 11 10 9 13 13 C 1.30487 * 109.39902 * 0.36754 * 12 11 10 14 14 C 1.50694 * 125.74366 * 179.89487 * 13 12 11 15 15 C 1.50704 * 109.47288 * 269.69235 * 14 13 12 16 16 C 1.38236 * 119.98523 * 269.72809 * 15 14 13 17 17 C 1.38213 * 120.00895 * 179.72590 * 16 15 14 18 18 C 1.38343 * 119.98993 * 0.54633 * 17 16 15 19 19 Cl 1.73605 * 120.01738 * 179.70622 * 18 17 16 20 20 C 1.38355 * 119.97387 * 359.72531 * 18 17 16 21 21 C 1.38221 * 119.98485 * 0.02562 * 20 18 17 22 22 H 0.96998 * 119.99806 * 359.97438 * 1 2 3 23 23 H 1.08002 * 126.58802 * 0.02997 * 10 9 7 24 24 H 1.07999 * 125.86334 * 180.02562 * 11 10 9 25 25 H 1.08999 * 109.46980 * 29.69341 * 14 13 12 26 26 H 1.08997 * 109.47219 * 149.69119 * 14 13 12 27 27 H 1.08002 * 119.99246 * 359.97438 * 16 15 14 28 28 H 1.08005 * 120.00577 * 180.26923 * 17 16 15 29 29 H 1.08000 * 120.01227 * 179.97438 * 20 18 17 30 30 H 1.08000 * 119.99199 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3133 0.0000 0.0000 3 14 2.2473 1.6178 0.0000 4 1 2.5143 2.0353 -1.3998 5 1 1.4351 2.6583 0.6805 6 1 3.5349 1.4459 0.7196 7 6 2.0080 -1.2031 -0.0005 8 1 3.0754 -1.2106 0.1645 9 7 1.3365 -2.3851 -0.2113 10 6 0.0906 -2.5283 -0.7701 11 6 -0.1805 -3.8470 -0.7856 12 7 0.8677 -4.4986 -0.2573 13 6 1.7812 -3.6362 0.0954 14 6 3.1073 -3.9682 0.7293 15 6 2.9602 -3.9725 2.2292 16 6 3.1753 -2.8113 2.9477 17 6 3.0350 -2.8133 4.3227 18 6 2.6903 -3.9802 4.9810 19 17 2.5214 -3.9853 6.7088 20 6 2.4807 -5.1434 4.2618 21 6 2.6162 -5.1391 2.8863 22 1 -0.4850 0.8400 0.0004 23 1 -0.5492 -1.7354 -1.1284 24 1 -1.0842 -4.3027 -1.1624 25 1 3.4343 -4.9523 0.3935 26 1 3.8461 -3.2213 0.4388 27 1 3.4491 -1.9015 2.4342 28 1 3.1988 -1.9050 4.8837 29 1 2.2120 -6.0549 4.7751 30 1 2.4530 -6.0471 2.3248 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082738920.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:42 Heat of formation + Delta-G solvation = 62.518581 kcal Electronic energy + Delta-G solvation = -16786.963876 eV Core-core repulsion = 13994.355800 eV Total energy + Delta-G solvation = -2792.608076 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.057 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.44150 -38.90451 -36.30720 -33.98371 -32.70200 -30.89145 -30.67109 -28.43326 -25.73125 -24.91433 -22.50410 -21.27610 -20.24563 -18.95823 -17.49458 -16.74801 -15.59691 -15.15241 -15.01899 -14.47382 -13.83123 -13.31616 -13.23672 -12.96949 -12.84558 -12.60126 -12.02801 -11.87319 -11.59176 -11.40645 -11.04422 -11.02428 -10.98289 -10.80343 -10.65183 -10.49458 -9.69966 -8.69532 -8.51796 -8.34318 -8.22986 -6.96864 -6.70794 -4.53583 1.47412 1.64655 2.33800 2.87770 2.97628 3.01087 3.62804 3.78079 3.98850 4.51621 4.83400 4.96834 5.11090 5.17334 5.41781 5.58517 5.72517 5.79936 6.01853 6.07760 6.28641 6.32906 6.52617 6.59401 6.75062 6.85426 6.99144 7.05786 7.16659 7.37001 7.51746 8.20017 8.33839 8.73140 9.40140 9.68776 10.21494 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.018137 B = 0.006814 C = 0.005524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.399107 B = 4108.261230 C = 5067.916932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.837 5.837 2 C 0.049 3.951 3 Si 0.934 3.066 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.263 1.263 7 C -0.345 4.345 8 H 0.108 0.892 9 N -0.258 5.258 10 C -0.038 4.038 11 C -0.097 4.097 12 N -0.511 5.511 13 C 0.103 3.897 14 C 0.026 3.974 15 C -0.054 4.054 16 C -0.091 4.091 17 C -0.113 4.113 18 C -0.043 4.043 19 Cl -0.089 7.089 20 C -0.116 4.116 21 C -0.094 4.094 22 H 0.280 0.720 23 H 0.169 0.831 24 H 0.142 0.858 25 H 0.085 0.915 26 H 0.078 0.922 27 H 0.135 0.865 28 H 0.127 0.873 29 H 0.127 0.873 30 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.033 -2.803 6.414 9.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.467 5.467 2 C -0.162 4.162 3 Si 0.759 3.241 4 H -0.195 1.195 5 H -0.202 1.202 6 H -0.187 1.187 7 C -0.474 4.474 8 H 0.125 0.875 9 N 0.076 4.924 10 C -0.181 4.181 11 C -0.249 4.249 12 N -0.232 5.232 13 C -0.153 4.153 14 C -0.013 4.013 15 C -0.055 4.055 16 C -0.109 4.109 17 C -0.132 4.132 18 C -0.070 4.070 19 Cl -0.060 7.060 20 C -0.135 4.135 21 C -0.113 4.113 22 H 0.090 0.910 23 H 0.186 0.814 24 H 0.159 0.841 25 H 0.103 0.897 26 H 0.097 0.903 27 H 0.153 0.847 28 H 0.145 0.855 29 H 0.145 0.855 30 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 6.037 -3.362 6.718 9.637 hybrid contribution -0.122 1.863 0.106 1.870 sum 5.915 -1.498 6.824 9.155 Atomic orbital electron populations 1.69898 1.06447 1.28883 1.41508 1.25513 0.95621 1.00579 0.94440 0.85810 0.79427 0.79761 0.79135 1.19488 1.20186 1.18748 1.19824 0.93675 0.82144 1.51767 0.87456 1.41458 1.12099 1.05335 1.33479 1.22705 0.90547 0.97726 1.07169 1.21694 0.99307 0.91353 1.12517 1.69757 1.01740 1.33098 1.18614 1.22228 0.99158 0.81682 1.12268 1.18529 0.91698 1.02350 0.88724 1.20023 0.96502 0.93064 0.95937 1.21148 0.98619 0.98384 0.92728 1.20972 1.00848 0.96649 0.94718 1.20836 1.06428 0.96064 0.83648 1.98331 1.96506 1.98905 1.12286 1.20938 1.01525 0.96840 0.94164 1.21024 0.98515 0.98684 0.93043 0.90966 0.81370 0.84088 0.89685 0.90304 0.84718 0.85468 0.85503 0.85023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -21.31 10.88 55.49 0.60 -20.70 16 2 C 0.05 1.19 5.38 -17.51 -0.09 1.10 16 3 Si 0.93 18.21 29.56 -169.99 -5.03 13.18 16 4 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 5 H -0.28 -5.40 7.11 56.52 0.40 -5.00 16 6 H -0.26 -4.91 7.11 56.52 0.40 -4.51 16 7 C -0.34 -8.50 9.82 -14.72 -0.14 -8.64 16 8 H 0.11 2.43 7.10 -52.48 -0.37 2.06 16 9 N -0.26 -6.63 2.92 -58.87 -0.17 -6.80 16 10 C -0.04 -1.00 10.18 -16.38 -0.17 -1.16 16 11 C -0.10 -2.39 11.85 -17.77 -0.21 -2.60 16 12 N -0.51 -12.74 11.25 -10.52 -0.12 -12.86 16 13 C 0.10 2.46 7.14 -154.29 -1.10 1.36 16 14 C 0.03 0.49 5.64 -29.04 -0.16 0.33 16 15 C -0.05 -0.97 5.12 -104.62 -0.54 -1.50 16 16 C -0.09 -1.58 9.70 -39.59 -0.38 -1.96 16 17 C -0.11 -1.81 9.83 -39.55 -0.39 -2.20 16 18 C -0.04 -0.67 6.32 -39.50 -0.25 -0.92 16 19 Cl -0.09 -1.22 28.96 -51.86 -1.50 -2.72 16 20 C -0.12 -1.76 9.83 -39.54 -0.39 -2.15 16 21 C -0.09 -1.55 9.70 -39.59 -0.38 -1.93 16 22 H 0.28 6.59 8.31 -40.82 -0.34 6.25 16 23 H 0.17 4.41 6.42 -52.49 -0.34 4.07 16 24 H 0.14 3.07 8.06 -52.49 -0.42 2.64 16 25 H 0.08 1.44 8.08 -51.93 -0.42 1.02 16 26 H 0.08 1.39 7.25 -51.93 -0.38 1.02 16 27 H 0.13 2.34 8.06 -52.49 -0.42 1.92 16 28 H 0.13 1.80 8.06 -52.48 -0.42 1.38 16 29 H 0.13 1.64 8.06 -52.49 -0.42 1.21 16 30 H 0.13 2.00 8.06 -52.49 -0.42 1.58 16 LS Contribution 282.85 15.07 4.26 4.26 Total: -1.00 -28.19 282.85 -8.92 -37.11 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: -2.75 Total: 8.83 kcal Atomic # 6 Polarization: -16.09 SS G_CDS: -4.21 Total: -20.30 kcal Atomic # 7 Polarization: -40.68 SS G_CDS: 0.31 Total: -40.36 kcal Atomic # 14 Polarization: 18.21 SS G_CDS: -5.03 Total: 13.18 kcal Atomic # 17 Polarization: -1.22 SS G_CDS: -1.50 Total: -2.72 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -28.19 -8.92 -37.11 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082738920.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.632 kcal (2) G-P(sol) polarization free energy of solvation -28.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.113 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds