Wall clock time and date at job start Mon Mar 30 2020 06:31:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31333 * 1 3 3 Si 1.86805 * 119.99708 * 2 1 4 4 H 1.48491 * 109.47333 * 269.07889 * 3 2 1 5 5 H 1.48504 * 109.47077 * 29.08089 * 3 2 1 6 6 H 1.48506 * 109.46587 * 149.07505 * 3 2 1 7 7 C 1.38928 * 120.00105 * 180.02562 * 2 1 3 8 8 H 1.08008 * 120.00081 * 190.16368 * 7 2 1 9 9 N 1.37562 * 120.00322 * 10.16526 * 7 2 1 10 10 C 1.37289 * 126.50946 * 18.31953 * 9 7 2 11 11 C 1.34639 * 106.83229 * 180.02562 * 10 9 7 12 12 N 1.34251 * 108.27954 * 359.78474 * 11 10 9 13 13 C 1.30487 * 109.39902 * 0.36754 * 12 11 10 14 14 C 1.50694 * 125.74366 * 179.89487 * 13 12 11 15 15 C 1.50704 * 109.47288 * 269.69235 * 14 13 12 16 16 C 1.38236 * 119.98523 * 269.72809 * 15 14 13 17 17 C 1.38213 * 120.00895 * 179.72590 * 16 15 14 18 18 C 1.38343 * 119.98993 * 0.54633 * 17 16 15 19 19 Cl 1.73605 * 120.01738 * 179.70622 * 18 17 16 20 20 C 1.38355 * 119.97387 * 359.72531 * 18 17 16 21 21 C 1.38221 * 119.98485 * 0.02562 * 20 18 17 22 22 H 0.96998 * 119.99806 * 359.97438 * 1 2 3 23 23 H 1.08002 * 126.58802 * 0.02997 * 10 9 7 24 24 H 1.07999 * 125.86334 * 180.02562 * 11 10 9 25 25 H 1.08999 * 109.46980 * 29.69341 * 14 13 12 26 26 H 1.08997 * 109.47219 * 149.69119 * 14 13 12 27 27 H 1.08002 * 119.99246 * 359.97438 * 16 15 14 28 28 H 1.08005 * 120.00577 * 180.26923 * 17 16 15 29 29 H 1.08000 * 120.01227 * 179.97438 * 20 18 17 30 30 H 1.08000 * 119.99199 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3133 0.0000 0.0000 3 14 2.2473 1.6178 0.0000 4 1 2.5143 2.0353 -1.3998 5 1 1.4351 2.6583 0.6805 6 1 3.5349 1.4459 0.7196 7 6 2.0080 -1.2031 -0.0005 8 1 3.0754 -1.2106 0.1645 9 7 1.3365 -2.3851 -0.2113 10 6 0.0906 -2.5283 -0.7701 11 6 -0.1805 -3.8470 -0.7856 12 7 0.8677 -4.4986 -0.2573 13 6 1.7812 -3.6362 0.0954 14 6 3.1073 -3.9682 0.7293 15 6 2.9602 -3.9725 2.2292 16 6 3.1753 -2.8113 2.9477 17 6 3.0350 -2.8133 4.3227 18 6 2.6903 -3.9802 4.9810 19 17 2.5214 -3.9853 6.7088 20 6 2.4807 -5.1434 4.2618 21 6 2.6162 -5.1391 2.8863 22 1 -0.4850 0.8400 0.0004 23 1 -0.5492 -1.7354 -1.1284 24 1 -1.0842 -4.3027 -1.1624 25 1 3.4343 -4.9523 0.3935 26 1 3.8461 -3.2213 0.4388 27 1 3.4491 -1.9015 2.4342 28 1 3.1988 -1.9050 4.8837 29 1 2.2120 -6.0549 4.7751 30 1 2.4530 -6.0471 2.3248 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082738920.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:42 Heat of formation + Delta-G solvation = 49.798468 kcal Electronic energy + Delta-G solvation = -16787.515462 eV Core-core repulsion = 13994.355800 eV Total energy + Delta-G solvation = -2793.159661 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.057 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.30020 -40.19012 -37.47460 -35.83894 -34.12822 -32.73995 -31.95795 -30.04792 -27.48078 -26.66228 -23.76514 -22.64045 -22.13512 -20.77372 -19.29734 -18.03840 -17.40500 -16.46692 -16.37471 -16.09214 -15.46281 -14.86215 -14.64548 -14.38791 -14.34131 -14.21546 -13.72377 -13.60221 -13.00375 -13.00084 -12.74447 -12.37750 -12.25410 -12.19821 -12.14616 -11.71857 -11.48426 -10.45085 -10.24832 -9.94341 -9.51948 -8.85138 -8.56429 -6.44127 0.18942 0.39257 1.14828 1.29889 1.38759 1.52511 1.85101 2.13223 2.55868 2.71701 3.00776 3.19493 3.84651 3.98318 4.03136 4.06394 4.36405 4.45078 4.67712 4.75976 4.78176 4.94712 5.01584 5.09918 5.17316 5.28023 5.31110 5.42230 5.62466 5.70737 5.88746 6.32361 6.43541 6.86014 7.53026 7.77890 8.40848 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.018137 B = 0.006814 C = 0.005524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.399107 B = 4108.261230 C = 5067.916932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.872 5.872 2 C 0.006 3.994 3 Si 1.005 2.995 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.246 1.246 7 C -0.366 4.366 8 H 0.123 0.877 9 N -0.273 5.273 10 C -0.068 4.068 11 C -0.103 4.103 12 N -0.528 5.528 13 C 0.103 3.897 14 C 0.028 3.972 15 C -0.072 4.072 16 C -0.103 4.103 17 C -0.118 4.118 18 C -0.047 4.047 19 Cl -0.071 7.071 20 C -0.114 4.114 21 C -0.100 4.100 22 H 0.283 0.717 23 H 0.158 0.842 24 H 0.164 0.836 25 H 0.102 0.898 26 H 0.087 0.913 27 H 0.130 0.870 28 H 0.143 0.857 29 H 0.151 0.849 30 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.219 -2.681 7.577 10.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.201 4.201 3 Si 0.825 3.175 4 H -0.192 1.192 5 H -0.202 1.202 6 H -0.169 1.169 7 C -0.494 4.494 8 H 0.140 0.860 9 N 0.061 4.939 10 C -0.211 4.211 11 C -0.255 4.255 12 N -0.249 5.249 13 C -0.154 4.154 14 C -0.011 4.011 15 C -0.073 4.073 16 C -0.122 4.122 17 C -0.137 4.137 18 C -0.074 4.074 19 Cl -0.042 7.042 20 C -0.132 4.132 21 C -0.118 4.118 22 H 0.093 0.907 23 H 0.175 0.825 24 H 0.181 0.819 25 H 0.121 0.879 26 H 0.106 0.894 27 H 0.148 0.852 28 H 0.161 0.839 29 H 0.169 0.831 30 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 7.222 -3.257 7.881 11.175 hybrid contribution -0.516 1.767 -0.188 1.850 sum 6.706 -1.490 7.694 10.315 Atomic orbital electron populations 1.70006 1.08135 1.29962 1.42271 1.26540 0.96328 1.03878 0.93332 0.84759 0.78609 0.74860 0.79251 1.19167 1.20197 1.16931 1.20316 0.94531 0.82313 1.52240 0.85974 1.41736 1.12136 1.06292 1.33688 1.22735 0.91429 0.98039 1.08875 1.22100 1.00148 0.91123 1.12164 1.69792 1.02186 1.33471 1.19445 1.23163 1.00337 0.81031 1.10911 1.18662 0.89417 1.03520 0.89456 1.19990 0.98105 0.93964 0.95243 1.21195 0.99340 0.98148 0.93494 1.21163 1.00521 0.97632 0.94349 1.20989 1.05670 0.95996 0.84734 1.98339 1.96363 1.98873 1.10663 1.21212 1.00495 0.97742 0.93790 1.21193 0.98237 0.98587 0.93772 0.90664 0.82491 0.81916 0.87924 0.89436 0.85229 0.83921 0.83088 0.84076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -45.03 10.88 21.65 0.24 -44.79 16 2 C 0.01 0.31 5.38 84.93 0.46 0.77 16 3 Si 1.01 36.55 29.56 68.60 2.03 38.58 16 4 H -0.27 -9.52 7.11 99.48 0.71 -8.82 16 5 H -0.28 -10.00 7.11 99.48 0.71 -9.29 16 6 H -0.25 -8.21 7.11 99.48 0.71 -7.50 16 7 C -0.37 -17.98 9.82 83.96 0.82 -17.16 16 8 H 0.12 5.44 7.10 -2.91 -0.02 5.42 16 9 N -0.27 -14.13 2.92 -340.18 -0.99 -15.12 16 10 C -0.07 -3.63 10.18 83.01 0.85 -2.78 16 11 C -0.10 -5.16 11.85 83.50 0.99 -4.17 16 12 N -0.53 -26.24 11.25 -187.19 -2.11 -28.34 16 13 C 0.10 4.89 7.14 137.73 0.98 5.87 16 14 C 0.03 1.04 5.64 29.10 0.16 1.21 16 15 C -0.07 -2.50 5.12 -19.86 -0.10 -2.60 16 16 C -0.10 -3.51 9.70 22.26 0.22 -3.29 16 17 C -0.12 -3.59 9.83 22.29 0.22 -3.37 16 18 C -0.05 -1.37 6.32 22.32 0.14 -1.23 16 19 Cl -0.07 -1.78 28.96 -2.72 -0.08 -1.86 16 20 C -0.11 -3.21 9.83 22.29 0.22 -2.99 16 21 C -0.10 -3.11 9.70 22.27 0.22 -2.89 16 22 H 0.28 13.52 8.31 -92.71 -0.77 12.75 16 23 H 0.16 8.56 6.42 -2.91 -0.02 8.54 16 24 H 0.16 7.08 8.06 -2.91 -0.02 7.06 16 25 H 0.10 3.35 8.08 -2.39 -0.02 3.33 16 26 H 0.09 3.01 7.25 -2.39 -0.02 3.00 16 27 H 0.13 4.43 8.06 -2.91 -0.02 4.41 16 28 H 0.14 3.78 8.06 -2.91 -0.02 3.76 16 29 H 0.15 3.45 8.06 -2.91 -0.02 3.42 16 30 H 0.14 4.05 8.06 -2.91 -0.02 4.03 16 Total: -1.00 -59.49 282.85 5.42 -54.08 By element: Atomic # 1 Polarization: 28.95 SS G_CDS: 1.16 Total: 30.10 kcal Atomic # 6 Polarization: -37.81 SS G_CDS: 5.17 Total: -32.64 kcal Atomic # 7 Polarization: -85.39 SS G_CDS: -2.86 Total: -88.25 kcal Atomic # 14 Polarization: 36.55 SS G_CDS: 2.03 Total: 38.58 kcal Atomic # 17 Polarization: -1.78 SS G_CDS: -0.08 Total: -1.86 kcal Total: -59.49 5.42 -54.08 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082738920.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.874 kcal (2) G-P(sol) polarization free energy of solvation -59.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.076 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds