Wall clock time and date at job start Mon Mar 30 2020 06:31:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31337 * 1 3 3 Si 1.86795 * 119.99887 * 2 1 4 4 H 1.48503 * 109.47249 * 240.00297 * 3 2 1 5 5 H 1.48509 * 109.47003 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47490 * 119.99940 * 3 2 1 7 7 C 1.38937 * 120.00121 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00172 * 179.97438 * 7 2 1 9 9 N 1.37563 * 119.99794 * 0.02562 * 7 2 1 10 10 C 1.37290 * 126.51578 * 20.53011 * 9 7 2 11 11 C 1.34646 * 106.83285 * 180.27367 * 10 9 7 12 12 N 1.34247 * 108.27304 * 359.76113 * 11 10 9 13 13 C 1.30475 * 109.40771 * 359.97438 * 12 11 10 14 14 C 1.50697 * 125.74520 * 179.97438 * 13 12 11 15 15 C 1.50700 * 109.47390 * 274.37401 * 14 13 12 16 16 C 1.38231 * 120.00966 * 265.46039 * 15 14 13 17 17 C 1.38218 * 120.01370 * 179.97438 * 16 15 14 18 18 C 1.38257 * 120.02877 * 0.02562 * 17 16 15 19 19 C 1.38199 * 120.01123 * 359.97438 * 18 17 16 20 20 C 1.38337 * 120.00187 * 85.43592 * 15 14 13 21 21 Cl 1.73590 * 120.01565 * 0.04666 * 20 15 14 22 22 H 0.96992 * 120.00096 * 0.02562 * 1 2 3 23 23 H 1.07997 * 126.58678 * 0.02562 * 10 9 7 24 24 H 1.07998 * 125.85892 * 179.76186 * 11 10 9 25 25 H 1.09004 * 109.47523 * 154.37344 * 14 13 12 26 26 H 1.08999 * 109.47026 * 34.37631 * 14 13 12 27 27 H 1.08005 * 119.99330 * 359.97387 * 16 15 14 28 28 H 1.08002 * 119.98617 * 180.02562 * 17 16 15 29 29 H 1.07999 * 119.99593 * 180.27520 * 18 17 16 30 30 H 1.08001 * 120.00296 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3134 0.0000 0.0000 3 14 2.2473 1.6177 0.0000 4 1 3.1010 1.6965 -1.2125 5 1 1.2822 2.7465 -0.0006 6 1 3.1010 1.6965 1.2124 7 6 2.0081 -1.2032 0.0005 8 1 3.0880 -1.2032 0.0001 9 7 1.3202 -2.3945 0.0005 10 6 0.0170 -2.5854 -0.3869 11 6 -0.2510 -3.8946 -0.2219 12 7 0.8543 -4.4946 0.2478 13 6 1.8039 -3.6100 0.3823 14 6 3.1985 -3.8848 0.8829 15 6 3.2125 -3.8258 2.3887 16 6 3.5587 -2.6519 3.0313 17 6 3.5711 -2.5975 4.4124 18 6 3.2378 -3.7170 5.1519 19 6 2.8915 -4.8912 4.5106 20 6 2.8784 -4.9462 3.1281 21 17 2.4441 -6.4209 2.3218 22 1 -0.4850 0.8400 -0.0004 23 1 -0.6638 -1.8299 -0.7501 24 1 -1.1934 -4.3787 -0.4315 25 1 3.8822 -3.1356 0.4836 26 1 3.5135 -4.8755 0.5552 27 1 3.8196 -1.7771 2.4541 28 1 3.8413 -1.6800 4.9140 29 1 3.2434 -3.6726 6.2310 30 1 2.6308 -5.7656 5.0885 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082738924.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:44 Heat of formation + Delta-G solvation = 66.837554 kcal Electronic energy + Delta-G solvation = -17068.856525 eV Core-core repulsion = 14276.435734 eV Total energy + Delta-G solvation = -2792.420791 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.057 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.35045 -38.86457 -35.84085 -33.91873 -32.91156 -30.76919 -30.34098 -28.48064 -25.70209 -24.88358 -22.32426 -21.32228 -20.14586 -18.88986 -17.45576 -16.58283 -15.54884 -15.16320 -15.03546 -14.42342 -13.80064 -13.42984 -13.22112 -12.83793 -12.60269 -12.32570 -11.87943 -11.69941 -11.45387 -11.34877 -11.10755 -10.98848 -10.91287 -10.68566 -10.63820 -10.15348 -9.61529 -8.53595 -8.38482 -8.25403 -8.19637 -6.87136 -6.63524 -4.50211 1.54282 1.62841 2.69849 2.91644 2.98865 3.01519 3.69596 3.82703 4.01394 4.61674 4.87547 5.03454 5.14715 5.17943 5.35357 5.61113 5.72754 5.81049 6.03627 6.12767 6.27633 6.37778 6.55665 6.72091 6.82626 6.84424 6.98176 7.10778 7.17136 7.47288 7.60989 8.28230 8.44016 8.79776 9.48214 9.79583 10.27384 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.020365 B = 0.008165 C = 0.006375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.590778 B = 3428.263770 C = 4391.230575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.842 5.842 2 C 0.047 3.953 3 Si 0.936 3.064 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.267 1.267 7 C -0.341 4.341 8 H 0.106 0.894 9 N -0.263 5.263 10 C -0.037 4.037 11 C -0.102 4.102 12 N -0.495 5.495 13 C 0.105 3.895 14 C 0.024 3.976 15 C -0.053 4.053 16 C -0.094 4.094 17 C -0.122 4.122 18 C -0.121 4.121 19 C -0.121 4.121 20 C -0.022 4.022 21 Cl -0.056 7.056 22 H 0.279 0.721 23 H 0.174 0.826 24 H 0.140 0.860 25 H 0.078 0.922 26 H 0.087 0.913 27 H 0.132 0.868 28 H 0.122 0.878 29 H 0.123 0.877 30 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.659 -2.725 6.485 9.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C -0.163 4.163 3 Si 0.761 3.239 4 H -0.192 1.192 5 H -0.202 1.202 6 H -0.191 1.191 7 C -0.471 4.471 8 H 0.123 0.877 9 N 0.071 4.929 10 C -0.180 4.180 11 C -0.255 4.255 12 N -0.215 5.215 13 C -0.152 4.152 14 C -0.015 4.015 15 C -0.055 4.055 16 C -0.112 4.112 17 C -0.140 4.140 18 C -0.139 4.139 19 C -0.139 4.139 20 C -0.048 4.048 21 Cl -0.027 7.027 22 H 0.090 0.910 23 H 0.191 0.809 24 H 0.157 0.843 25 H 0.097 0.903 26 H 0.105 0.895 27 H 0.150 0.850 28 H 0.140 0.860 29 H 0.141 0.859 30 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 6.650 -3.399 6.607 9.972 hybrid contribution -0.109 1.733 -0.178 1.745 sum 6.541 -1.666 6.429 9.322 Atomic orbital electron populations 1.69849 1.06377 1.28740 1.42389 1.25515 0.95706 1.00505 0.94553 0.85840 0.79107 0.79453 0.79530 1.19164 1.20214 1.19140 1.19779 0.92420 0.81663 1.53198 0.87674 1.41486 1.09182 1.06212 1.36066 1.22920 0.88447 0.97521 1.09107 1.21736 0.97835 0.92352 1.13541 1.69824 0.99537 1.32167 1.20010 1.22149 0.96900 0.82896 1.13205 1.18544 0.91195 1.02751 0.89018 1.19809 0.97283 0.92023 0.96387 1.21118 0.98703 0.97002 0.94391 1.21151 1.00449 0.98326 0.94094 1.20970 1.00641 0.92728 0.99584 1.20950 1.01734 0.98927 0.92334 1.20833 1.02597 0.88988 0.92431 1.98366 1.91207 1.33323 1.79806 0.91047 0.80887 0.84270 0.90317 0.89450 0.85007 0.85974 0.85871 0.85604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -21.71 10.65 55.49 0.59 -21.12 16 2 C 0.05 1.16 5.46 -17.50 -0.10 1.06 16 3 Si 0.94 18.47 29.55 -169.99 -5.02 13.45 16 4 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 5 H -0.28 -5.44 7.11 56.52 0.40 -5.04 16 6 H -0.27 -5.10 7.11 56.52 0.40 -4.70 16 7 C -0.34 -8.62 9.82 -14.72 -0.14 -8.76 16 8 H 0.11 2.44 7.02 -52.49 -0.37 2.07 16 9 N -0.26 -6.94 2.93 -58.87 -0.17 -7.11 16 10 C -0.04 -0.98 10.22 -16.38 -0.17 -1.15 16 11 C -0.10 -2.59 11.85 -17.77 -0.21 -2.80 16 12 N -0.49 -12.59 10.97 -10.52 -0.12 -12.71 16 13 C 0.11 2.59 7.14 -154.30 -1.10 1.49 16 14 C 0.02 0.48 5.21 -29.04 -0.15 0.33 16 15 C -0.05 -1.01 5.12 -104.59 -0.54 -1.55 16 16 C -0.09 -1.64 9.68 -39.59 -0.38 -2.02 16 17 C -0.12 -1.83 10.05 -39.58 -0.40 -2.23 16 18 C -0.12 -1.70 10.05 -39.59 -0.40 -2.10 16 19 C -0.12 -1.86 9.83 -39.55 -0.39 -2.25 16 20 C -0.02 -0.39 6.31 -39.50 -0.25 -0.64 16 21 Cl -0.06 -1.00 27.11 -51.86 -1.41 -2.41 16 22 H 0.28 6.67 8.31 -40.82 -0.34 6.34 16 23 H 0.17 4.65 6.23 -52.49 -0.33 4.32 16 24 H 0.14 3.13 8.06 -52.49 -0.42 2.71 16 25 H 0.08 1.48 7.10 -51.93 -0.37 1.11 16 26 H 0.09 1.68 7.10 -51.93 -0.37 1.31 16 27 H 0.13 2.25 8.06 -52.48 -0.42 1.83 16 28 H 0.12 1.51 8.06 -52.49 -0.42 1.09 16 29 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 30 H 0.13 1.65 8.06 -52.49 -0.42 1.22 16 LS Contribution 279.31 15.07 4.21 4.21 Total: -1.00 -29.05 279.31 -8.82 -37.87 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: -2.68 Total: 8.42 kcal Atomic # 6 Polarization: -16.39 SS G_CDS: -4.22 Total: -20.61 kcal Atomic # 7 Polarization: -41.24 SS G_CDS: 0.30 Total: -40.93 kcal Atomic # 14 Polarization: 18.47 SS G_CDS: -5.02 Total: 13.45 kcal Atomic # 17 Polarization: -1.00 SS G_CDS: -1.41 Total: -2.41 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -29.05 -8.82 -37.87 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082738924.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.711 kcal (2) G-P(sol) polarization free energy of solvation -29.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.874 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds