Wall clock time and date at job start Mon Mar 30 2020 06:31:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31337 * 1 3 3 Si 1.86795 * 119.99887 * 2 1 4 4 H 1.48503 * 109.47249 * 240.00297 * 3 2 1 5 5 H 1.48509 * 109.47003 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47490 * 119.99940 * 3 2 1 7 7 C 1.38937 * 120.00121 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00172 * 179.97438 * 7 2 1 9 9 N 1.37563 * 119.99794 * 0.02562 * 7 2 1 10 10 C 1.37290 * 126.51578 * 20.53011 * 9 7 2 11 11 C 1.34646 * 106.83285 * 180.27367 * 10 9 7 12 12 N 1.34247 * 108.27304 * 359.76113 * 11 10 9 13 13 C 1.30475 * 109.40771 * 359.97438 * 12 11 10 14 14 C 1.50697 * 125.74520 * 179.97438 * 13 12 11 15 15 C 1.50700 * 109.47390 * 274.37401 * 14 13 12 16 16 C 1.38231 * 120.00966 * 265.46039 * 15 14 13 17 17 C 1.38218 * 120.01370 * 179.97438 * 16 15 14 18 18 C 1.38257 * 120.02877 * 0.02562 * 17 16 15 19 19 C 1.38199 * 120.01123 * 359.97438 * 18 17 16 20 20 C 1.38337 * 120.00187 * 85.43592 * 15 14 13 21 21 Cl 1.73590 * 120.01565 * 0.04666 * 20 15 14 22 22 H 0.96992 * 120.00096 * 0.02562 * 1 2 3 23 23 H 1.07997 * 126.58678 * 0.02562 * 10 9 7 24 24 H 1.07998 * 125.85892 * 179.76186 * 11 10 9 25 25 H 1.09004 * 109.47523 * 154.37344 * 14 13 12 26 26 H 1.08999 * 109.47026 * 34.37631 * 14 13 12 27 27 H 1.08005 * 119.99330 * 359.97387 * 16 15 14 28 28 H 1.08002 * 119.98617 * 180.02562 * 17 16 15 29 29 H 1.07999 * 119.99593 * 180.27520 * 18 17 16 30 30 H 1.08001 * 120.00296 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3134 0.0000 0.0000 3 14 2.2473 1.6177 0.0000 4 1 3.1010 1.6965 -1.2125 5 1 1.2822 2.7465 -0.0006 6 1 3.1010 1.6965 1.2124 7 6 2.0081 -1.2032 0.0005 8 1 3.0880 -1.2032 0.0001 9 7 1.3202 -2.3945 0.0005 10 6 0.0170 -2.5854 -0.3869 11 6 -0.2510 -3.8946 -0.2219 12 7 0.8543 -4.4946 0.2478 13 6 1.8039 -3.6100 0.3823 14 6 3.1985 -3.8848 0.8829 15 6 3.2125 -3.8258 2.3887 16 6 3.5587 -2.6519 3.0313 17 6 3.5711 -2.5975 4.4124 18 6 3.2378 -3.7170 5.1519 19 6 2.8915 -4.8912 4.5106 20 6 2.8784 -4.9462 3.1281 21 17 2.4441 -6.4209 2.3218 22 1 -0.4850 0.8400 -0.0004 23 1 -0.6638 -1.8299 -0.7501 24 1 -1.1934 -4.3787 -0.4315 25 1 3.8822 -3.1356 0.4836 26 1 3.5135 -4.8755 0.5552 27 1 3.8196 -1.7771 2.4541 28 1 3.8413 -1.6800 4.9140 29 1 3.2434 -3.6726 6.2310 30 1 2.6308 -5.7656 5.0885 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082738924.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:43 Heat of formation + Delta-G solvation = 52.965901 kcal Electronic energy + Delta-G solvation = -17069.458045 eV Core-core repulsion = 14276.435734 eV Total energy + Delta-G solvation = -2793.022311 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.057 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.26207 -40.14961 -37.17517 -35.81765 -34.35759 -32.70400 -31.57813 -30.11272 -27.49174 -26.69188 -23.57913 -22.67168 -22.08715 -20.75802 -19.30143 -17.88255 -17.39520 -16.50816 -16.34681 -16.06399 -15.47910 -14.84079 -14.70058 -14.58501 -14.12922 -13.96713 -13.62460 -13.41860 -12.97624 -12.92618 -12.72445 -12.44040 -12.27217 -12.20193 -12.05412 -11.52582 -11.40851 -10.34865 -10.20265 -9.79378 -9.51187 -8.80246 -8.53512 -6.45301 0.28336 0.38122 1.32778 1.37885 1.38544 1.51455 1.88328 2.14370 2.62091 2.76553 3.01967 3.20293 3.87067 3.92056 4.08704 4.17248 4.38531 4.48908 4.65101 4.73097 4.80341 4.97964 4.99663 5.10904 5.18213 5.35274 5.44348 5.52011 5.60252 5.66590 5.96111 6.35271 6.48169 6.87777 7.55741 7.83426 8.42868 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.020365 B = 0.008165 C = 0.006375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.590778 B = 3428.263770 C = 4391.230575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.004 3.996 3 Si 1.009 2.991 4 H -0.259 1.259 5 H -0.276 1.276 6 H -0.252 1.252 7 C -0.366 4.366 8 H 0.119 0.881 9 N -0.277 5.277 10 C -0.066 4.066 11 C -0.110 4.110 12 N -0.509 5.509 13 C 0.104 3.896 14 C 0.027 3.973 15 C -0.079 4.079 16 C -0.110 4.110 17 C -0.121 4.121 18 C -0.109 4.109 19 C -0.123 4.123 20 C -0.041 4.041 21 Cl -0.067 7.067 22 H 0.283 0.717 23 H 0.164 0.836 24 H 0.160 0.840 25 H 0.086 0.914 26 H 0.091 0.909 27 H 0.128 0.872 28 H 0.152 0.848 29 H 0.164 0.836 30 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.993 -1.758 8.368 11.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C -0.203 4.203 3 Si 0.829 3.171 4 H -0.183 1.183 5 H -0.201 1.201 6 H -0.176 1.176 7 C -0.494 4.494 8 H 0.137 0.863 9 N 0.057 4.943 10 C -0.208 4.208 11 C -0.262 4.262 12 N -0.230 5.230 13 C -0.153 4.153 14 C -0.012 4.012 15 C -0.081 4.081 16 C -0.129 4.129 17 C -0.139 4.139 18 C -0.127 4.127 19 C -0.142 4.142 20 C -0.068 4.068 21 Cl -0.038 7.038 22 H 0.093 0.907 23 H 0.181 0.819 24 H 0.178 0.822 25 H 0.104 0.896 26 H 0.109 0.891 27 H 0.146 0.854 28 H 0.170 0.830 29 H 0.182 0.818 30 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 7.981 -2.453 8.487 11.906 hybrid contribution -0.532 1.401 -0.706 1.657 sum 7.449 -1.052 7.781 10.823 Atomic orbital electron populations 1.69967 1.08063 1.29873 1.42795 1.26589 0.96479 1.03903 0.93295 0.84760 0.77809 0.74327 0.80221 1.18327 1.20079 1.17610 1.20282 0.93277 0.81852 1.54004 0.86320 1.41768 1.09220 1.07124 1.36222 1.22938 0.89173 0.97866 1.10857 1.22126 0.98773 0.92183 1.13149 1.69856 0.99848 1.32524 1.20742 1.22981 0.98267 0.82282 1.11791 1.18598 0.88860 1.03076 0.90617 1.19750 0.99674 0.93323 0.95367 1.21249 0.99413 0.96369 0.95827 1.21537 0.99254 0.99958 0.93103 1.21456 0.98209 0.91484 1.01576 1.21319 1.00967 1.00495 0.91388 1.21064 1.03594 0.88515 0.93583 1.98355 1.91383 1.33782 1.80230 0.90702 0.81928 0.82236 0.89596 0.89093 0.85382 0.82997 0.81833 0.83336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -45.63 10.65 21.65 0.23 -45.40 16 2 C 0.00 0.19 5.46 84.93 0.46 0.65 16 3 Si 1.01 36.88 29.55 68.60 2.03 38.90 16 4 H -0.26 -9.09 7.11 99.48 0.71 -8.38 16 5 H -0.28 -9.94 7.11 99.48 0.71 -9.24 16 6 H -0.25 -8.59 7.11 99.48 0.71 -7.88 16 7 C -0.37 -18.53 9.82 83.96 0.82 -17.70 16 8 H 0.12 5.48 7.02 -2.91 -0.02 5.46 16 9 N -0.28 -14.85 2.93 -340.18 -1.00 -15.84 16 10 C -0.07 -3.59 10.22 83.01 0.85 -2.74 16 11 C -0.11 -5.69 11.85 83.50 0.99 -4.70 16 12 N -0.51 -26.25 10.97 -187.19 -2.05 -28.31 16 13 C 0.10 5.19 7.14 137.74 0.98 6.18 16 14 C 0.03 1.11 5.21 29.10 0.15 1.26 16 15 C -0.08 -2.96 5.12 -19.84 -0.10 -3.06 16 16 C -0.11 -3.70 9.68 22.26 0.22 -3.48 16 17 C -0.12 -3.23 10.05 22.27 0.22 -3.01 16 18 C -0.11 -2.65 10.05 22.26 0.22 -2.42 16 19 C -0.12 -3.47 9.83 22.29 0.22 -3.25 16 20 C -0.04 -1.42 6.31 22.32 0.14 -1.28 16 21 Cl -0.07 -2.36 27.11 -2.72 -0.07 -2.43 16 22 H 0.28 13.64 8.31 -92.71 -0.77 12.87 16 23 H 0.16 9.10 6.23 -2.91 -0.02 9.08 16 24 H 0.16 7.27 8.06 -2.91 -0.02 7.24 16 25 H 0.09 3.26 7.10 -2.38 -0.02 3.24 16 26 H 0.09 3.54 7.10 -2.39 -0.02 3.52 16 27 H 0.13 4.27 8.06 -2.91 -0.02 4.24 16 28 H 0.15 3.11 8.06 -2.91 -0.02 3.09 16 29 H 0.16 2.64 8.06 -2.91 -0.02 2.62 16 30 H 0.15 3.42 8.06 -2.91 -0.02 3.40 16 Total: -1.00 -62.85 279.31 5.48 -57.38 By element: Atomic # 1 Polarization: 28.10 SS G_CDS: 1.16 Total: 29.26 kcal Atomic # 6 Polarization: -38.74 SS G_CDS: 5.18 Total: -33.56 kcal Atomic # 7 Polarization: -86.73 SS G_CDS: -2.82 Total: -89.55 kcal Atomic # 14 Polarization: 36.88 SS G_CDS: 2.03 Total: 38.90 kcal Atomic # 17 Polarization: -2.36 SS G_CDS: -0.07 Total: -2.43 kcal Total: -62.85 5.48 -57.38 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082738924.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.341 kcal (2) G-P(sol) polarization free energy of solvation -62.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.375 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds