Wall clock time and date at job start Mon Mar 30 2020 06:17:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30748 * 1 3 3 Si 1.86795 * 119.99746 * 2 1 4 4 H 1.48503 * 109.47482 * 270.00152 * 3 2 1 5 5 H 1.48497 * 109.47397 * 30.00274 * 3 2 1 6 6 H 1.48504 * 109.47102 * 150.00571 * 3 2 1 7 7 C 1.40142 * 120.00019 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99640 * 179.97438 * 7 2 1 9 9 C 1.39852 * 120.00002 * 359.97438 * 7 2 1 10 10 N 1.31593 * 125.28596 * 179.97438 * 9 7 2 11 11 C 1.31265 * 115.81445 * 180.02562 * 10 9 7 12 12 C 1.48156 * 122.47874 * 179.97438 * 11 10 9 13 13 C 1.39530 * 120.05101 * 185.02425 * 12 11 10 14 14 C 1.37975 * 120.04784 * 179.97438 * 13 12 11 15 15 C 1.38672 * 120.15329 * 0.02562 * 14 13 12 16 16 O 1.35959 * 119.95013 * 179.97438 * 15 14 13 17 17 C 1.39486 * 120.10307 * 359.95869 * 15 14 13 18 18 N 1.39948 * 120.02603 * 180.02562 * 17 15 14 19 19 C 1.38433 * 119.94682 * 359.78699 * 17 15 14 20 20 C 1.37268 * 115.04353 * 0.24772 * 11 10 9 21 21 S 1.71010 * 109.07940 * 359.62707 * 20 11 10 22 22 H 0.96998 * 120.00581 * 359.97438 * 1 2 3 23 23 H 1.07997 * 119.97276 * 359.95291 * 13 12 11 24 24 H 1.07995 * 119.92547 * 179.97438 * 14 13 12 25 25 H 0.96708 * 113.99283 * 90.00607 * 16 15 14 26 26 H 0.97006 * 120.00495 * 0.02562 * 18 17 15 27 27 H 0.97008 * 120.00152 * 179.97438 * 18 17 15 28 28 H 1.08005 * 120.07854 * 180.22942 * 19 17 15 29 29 H 1.08001 * 125.46416 * 179.71743 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.4889 2.0465 -1.4001 5 1 1.4389 2.6526 0.7001 6 1 3.5390 1.4402 0.6999 7 6 2.0082 -1.2137 -0.0005 8 1 3.0882 -1.2136 -0.0010 9 6 1.3089 -2.4248 -0.0005 10 7 1.8591 -3.6202 -0.0015 11 6 1.0247 -4.6335 -0.0018 12 6 1.4837 -6.0422 -0.0035 13 6 0.5563 -7.0792 -0.1095 14 6 0.9839 -8.3910 -0.1116 15 6 2.3355 -8.6832 -0.0078 16 8 2.7523 -9.9773 -0.0097 17 6 3.2682 -7.6515 0.0982 18 7 4.6319 -7.9482 0.2023 19 6 2.8442 -6.3336 0.0954 20 6 -0.3047 -4.2915 -0.0065 21 16 -0.4434 -2.5870 0.0000 22 1 -0.4851 0.8400 0.0004 23 1 -0.4971 -6.8548 -0.1897 24 1 0.2643 -9.1921 -0.1933 25 1 2.9458 -10.3268 -0.8904 26 1 4.9289 -8.8716 0.2004 27 1 5.2803 -7.2303 0.2757 28 1 3.5649 -5.5330 0.1736 29 1 -1.1307 -4.9873 -0.0118 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083358141.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:07 Heat of formation + Delta-G solvation = -26.134058 kcal Electronic energy + Delta-G solvation = -16220.515964 eV Core-core repulsion = 13426.107328 eV Total energy + Delta-G solvation = -2794.408636 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.052 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.85576 -39.36970 -37.30703 -36.00248 -35.27565 -31.91523 -30.44430 -29.23720 -27.84837 -24.96338 -23.56892 -22.58450 -20.24523 -19.72463 -19.27405 -17.99837 -17.54312 -17.05407 -16.68936 -16.37791 -15.62080 -15.15479 -14.85831 -14.76345 -14.48263 -14.10330 -13.66877 -13.54375 -13.12648 -12.95661 -12.76206 -12.36754 -12.01535 -11.71559 -11.41543 -11.40389 -11.29281 -10.04253 -9.80221 -9.79618 -8.89761 -8.84677 -8.32353 -6.71115 0.00926 0.62478 0.81017 1.40093 1.51765 1.53103 1.58629 2.00361 2.19225 2.25363 2.86590 2.99002 3.30823 3.41018 3.86098 4.02639 4.45284 4.51691 4.77498 4.89089 4.92615 4.97007 5.17979 5.24059 5.44968 5.64938 5.83691 5.87265 5.96855 6.40046 6.44990 6.45926 6.95378 7.02340 7.76906 8.02146 Molecular weight = 262.05amu Principal moments of inertia in cm(-1) A = 0.037183 B = 0.004832 C = 0.004286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.853950 B = 5792.871342 C = 6530.644340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.799 5.799 2 C 0.020 3.980 3 Si 1.019 2.981 4 H -0.256 1.256 5 H -0.257 1.257 6 H -0.256 1.256 7 C -0.400 4.400 8 H 0.102 0.898 9 C 0.169 3.831 10 N -0.617 5.617 11 C 0.120 3.880 12 C 0.013 3.987 13 C -0.159 4.159 14 C -0.093 4.093 15 C 0.018 3.982 16 O -0.493 6.493 17 C 0.191 3.809 18 N -0.863 5.863 19 C -0.176 4.176 20 C -0.461 4.461 21 S 0.106 5.894 22 H 0.312 0.688 23 H 0.127 0.873 24 H 0.155 0.845 25 H 0.398 0.602 26 H 0.409 0.591 27 H 0.404 0.596 28 H 0.113 0.887 29 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.841 -8.262 -1.576 9.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.428 5.428 2 C -0.200 4.200 3 Si 0.837 3.163 4 H -0.180 1.180 5 H -0.181 1.181 6 H -0.179 1.179 7 C -0.443 4.443 8 H 0.120 0.880 9 C -0.083 4.083 10 N -0.340 5.340 11 C -0.018 4.018 12 C 0.009 3.991 13 C -0.180 4.180 14 C -0.112 4.112 15 C -0.032 4.032 16 O -0.304 6.304 17 C 0.085 3.915 18 N -0.404 5.404 19 C -0.200 4.200 20 C -0.605 4.605 21 S 0.366 5.634 22 H 0.126 0.874 23 H 0.145 0.855 24 H 0.173 0.827 25 H 0.254 0.746 26 H 0.240 0.760 27 H 0.233 0.767 28 H 0.132 0.868 29 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 3.180 -7.399 -0.965 8.111 hybrid contribution 0.712 -0.345 -0.466 0.918 sum 3.892 -7.745 -1.430 8.785 Atomic orbital electron populations 1.68798 1.09065 1.32749 1.32186 1.27198 0.95934 1.05577 0.91284 0.84612 0.78531 0.73145 0.80042 1.18024 1.18084 1.17910 1.19331 0.96096 0.88276 1.40584 0.88010 1.24328 0.92458 0.94828 0.96706 1.67322 1.35586 0.97548 1.33542 1.19285 0.88826 0.93082 1.00623 1.18387 0.93359 0.89988 0.97345 1.20935 0.99295 0.91583 1.06184 1.21240 0.95104 0.96215 0.98594 1.17893 0.90835 0.83106 1.11345 1.84832 1.87936 1.22486 1.35153 1.17994 0.86197 0.91970 0.95298 1.42251 1.02576 1.11413 1.84178 1.20548 0.95477 0.94572 1.09452 1.26615 0.99787 1.03954 1.30111 1.83943 1.10863 0.95366 1.73225 0.87418 0.85547 0.82725 0.74564 0.76015 0.76720 0.86848 0.82988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -37.97 10.63 21.86 0.23 -37.74 15 2 C 0.02 0.93 5.50 85.32 0.47 1.40 15 3 Si 1.02 34.40 29.56 68.60 2.03 36.43 15 4 H -0.26 -8.29 7.11 99.48 0.71 -7.58 15 5 H -0.26 -8.01 7.11 99.48 0.71 -7.30 15 6 H -0.26 -8.52 7.11 99.48 0.71 -7.81 15 7 C -0.40 -21.12 9.44 23.12 0.22 -20.91 15 8 H 0.10 5.20 7.85 -2.91 -0.02 5.18 15 9 C 0.17 9.61 7.11 85.12 0.61 10.21 15 10 N -0.62 -34.99 10.02 -183.97 -1.84 -36.83 15 11 C 0.12 6.27 6.65 41.64 0.28 6.55 15 12 C 0.01 0.55 5.88 -20.03 -0.12 0.43 15 13 C -0.16 -5.79 9.47 22.52 0.21 -5.58 15 14 C -0.09 -2.74 9.96 22.31 0.22 -2.52 15 15 C 0.02 0.51 6.73 22.67 0.15 0.67 15 16 O -0.49 -10.84 12.73 -93.09 -1.19 -12.02 15 17 C 0.19 6.08 6.76 38.19 0.26 6.34 15 18 N -0.86 -20.36 9.09 -51.14 -0.46 -20.83 15 19 C -0.18 -7.08 9.46 22.62 0.21 -6.87 15 20 C -0.46 -23.29 10.41 67.59 0.70 -22.59 15 21 S 0.11 5.57 20.12 -56.49 -1.14 4.44 15 22 H 0.31 12.96 8.29 -92.71 -0.77 12.19 15 23 H 0.13 4.39 6.61 -2.91 -0.02 4.37 15 24 H 0.16 3.53 8.06 -2.91 -0.02 3.51 15 25 H 0.40 4.89 9.06 -74.05 -0.67 4.22 15 26 H 0.41 7.54 8.18 -92.70 -0.76 6.78 15 27 H 0.40 8.75 8.84 -92.70 -0.82 7.93 15 28 H 0.11 4.91 7.68 -2.91 -0.02 4.89 15 29 H 0.15 6.84 6.86 -2.91 -0.02 6.82 15 Total: -1.00 -66.07 272.29 -0.16 -66.23 By element: Atomic # 1 Polarization: 34.19 SS G_CDS: -1.01 Total: 33.19 kcal Atomic # 6 Polarization: -36.08 SS G_CDS: 3.22 Total: -32.87 kcal Atomic # 7 Polarization: -93.31 SS G_CDS: -2.07 Total: -95.39 kcal Atomic # 8 Polarization: -10.84 SS G_CDS: -1.19 Total: -12.02 kcal Atomic # 14 Polarization: 34.40 SS G_CDS: 2.03 Total: 36.43 kcal Atomic # 16 Polarization: 5.57 SS G_CDS: -1.14 Total: 4.44 kcal Total: -66.07 -0.16 -66.23 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083358141.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.094 kcal (2) G-P(sol) polarization free energy of solvation -66.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds