Wall clock time and date at job start Mon Mar 30 2020 06:31:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86799 * 120.00147 * 2 1 4 4 H 1.48496 * 109.47383 * 240.00089 * 3 2 1 5 5 H 1.48501 * 109.47115 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47356 * 120.00226 * 3 2 1 7 7 C 1.37880 * 119.99894 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99623 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00144 * 0.02562 * 7 2 1 10 10 N 1.46504 * 109.47080 * 179.97438 * 9 7 2 11 11 N 1.40065 * 125.93186 * 90.01961 * 10 9 7 12 12 C 1.31613 * 108.14049 * 179.73613 * 11 10 9 13 13 C 1.48422 * 126.02932 * 180.02562 * 12 11 10 14 14 C 1.39327 * 120.11712 * 179.70212 * 13 12 11 15 15 C 1.38019 * 119.87663 * 179.72554 * 14 13 12 16 16 C 1.38328 * 120.11972 * 0.55050 * 15 14 13 17 17 C 1.38317 * 120.23957 * 359.72282 * 16 15 14 18 18 C 1.38021 * 120.12003 * 0.02562 * 17 16 15 19 19 C 1.40839 * 107.94126 * 359.97438 * 12 11 10 20 20 C 1.35076 * 125.92211 * 269.71238 * 10 9 7 21 21 Cl 1.73599 * 126.02867 * 0.25966 * 20 10 9 22 22 H 0.97003 * 120.00580 * 359.97438 * 1 2 3 23 23 H 1.08990 * 109.47246 * 59.99231 * 9 7 2 24 24 H 1.09003 * 109.46386 * 299.99420 * 9 7 2 25 25 H 1.08001 * 120.05935 * 359.97438 * 14 13 12 26 26 H 1.08000 * 119.94527 * 180.29643 * 15 14 13 27 27 H 1.07997 * 119.87667 * 179.70605 * 16 15 14 28 28 H 1.08000 * 119.94089 * 180.02562 * 17 16 15 29 29 H 1.08006 * 120.06211 * 180.02562 * 18 17 16 30 30 H 1.08005 * 126.08678 * 179.97438 * 19 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0005 11 7 2.7368 -4.2377 1.1347 12 6 3.5469 -5.1939 0.7325 13 6 4.3232 -6.1064 1.6087 14 6 5.1429 -7.0840 1.0486 15 6 5.8669 -7.9261 1.8680 16 6 5.7711 -7.8084 3.2429 17 6 4.9546 -6.8433 3.8042 18 6 4.2301 -5.9925 2.9941 19 6 3.5463 -5.1992 -0.6759 20 6 2.7138 -4.2186 -1.0933 21 17 2.3628 -3.8111 -2.7439 22 1 -0.4851 0.8400 0.0004 23 1 0.6246 -2.5571 -0.8895 24 1 0.6241 -2.5567 0.8904 25 1 5.2146 -7.1799 -0.0247 26 1 6.5063 -8.6812 1.4350 27 1 6.3358 -8.4726 3.8804 28 1 4.8837 -6.7554 4.8783 29 1 3.5931 -5.2390 3.4334 30 1 4.1111 -5.8668 -1.3097 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085018892.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:02 Heat of formation + Delta-G solvation = 85.595278 kcal Electronic energy + Delta-G solvation = -16196.369571 eV Core-core repulsion = 13404.762176 eV Total energy + Delta-G solvation = -2791.607395 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.057 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.65787 -38.71652 -36.27300 -33.95680 -32.37216 -30.92482 -30.33102 -29.24066 -26.89660 -23.77029 -22.62411 -22.20533 -20.14083 -19.62060 -17.23124 -16.76048 -16.00660 -15.18533 -14.74074 -14.57703 -14.39290 -13.67167 -13.41189 -13.13301 -13.00075 -12.81980 -12.34051 -11.69597 -11.48415 -11.27359 -11.13405 -11.06271 -10.87747 -10.82768 -10.31213 -10.05615 -10.01880 -9.21586 -8.84706 -8.68105 -8.21917 -7.79733 -6.30352 -4.38122 1.17284 1.51024 2.10199 2.41982 3.16278 3.22027 3.25565 3.28255 3.45064 4.12905 4.26655 4.76673 4.97047 5.03921 5.05044 5.20707 5.44783 5.56892 5.72237 5.87342 5.99765 6.14259 6.18657 6.48496 6.57469 6.63893 6.81384 6.89607 7.05714 7.15141 7.48235 7.69758 7.79326 8.23637 8.65622 9.28154 10.77796 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.022451 B = 0.005322 C = 0.004610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.863677 B = 5259.915398 C = 6071.696357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.069 3.931 3 Si 0.907 3.093 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.538 4.538 8 H 0.065 0.935 9 C 0.251 3.749 10 N -0.310 5.310 11 N -0.258 5.258 12 C 0.083 3.917 13 C 0.005 3.995 14 C -0.101 4.101 15 C -0.123 4.123 16 C -0.124 4.124 17 C -0.122 4.122 18 C -0.096 4.096 19 C -0.260 4.260 20 C 0.132 3.868 21 Cl -0.013 7.013 22 H 0.269 0.731 23 H 0.059 0.941 24 H 0.058 0.942 25 H 0.126 0.874 26 H 0.122 0.878 27 H 0.119 0.881 28 H 0.122 0.878 29 H 0.130 0.870 30 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.237 -13.049 0.934 15.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.135 4.135 3 Si 0.734 3.266 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.199 1.199 7 C -0.576 4.576 8 H 0.083 0.917 9 C 0.134 3.866 10 N -0.093 5.093 11 N -0.084 5.084 12 C -0.078 4.078 13 C 0.003 3.997 14 C -0.121 4.121 15 C -0.141 4.141 16 C -0.143 4.143 17 C -0.140 4.140 18 C -0.115 4.115 19 C -0.291 4.291 20 C -0.025 4.025 21 Cl 0.015 6.985 22 H 0.079 0.921 23 H 0.076 0.924 24 H 0.076 0.924 25 H 0.144 0.856 26 H 0.140 0.860 27 H 0.137 0.863 28 H 0.140 0.860 29 H 0.148 0.852 30 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 7.369 -12.113 1.760 14.287 hybrid contribution 0.631 0.714 -0.951 1.347 sum 8.001 -11.398 0.809 13.949 Atomic orbital electron populations 1.69902 1.06053 1.27932 1.48856 1.24898 0.94974 0.99433 0.94218 0.86391 0.79460 0.81704 0.79037 1.19848 1.20859 1.19884 1.21182 0.93681 0.89343 1.53426 0.91715 1.19907 0.86094 0.80241 1.00371 1.49685 1.33202 1.25835 1.00597 1.77667 1.13828 1.09481 1.07471 1.20379 0.98908 0.96582 0.91949 1.17851 0.95877 0.94112 0.91844 1.21130 0.96092 0.94702 1.00165 1.21009 0.99902 0.99570 0.93640 1.21163 0.99298 0.98701 0.95118 1.21078 0.97278 0.95911 0.99747 1.21323 0.98714 0.98879 0.92589 1.20809 1.08927 1.05238 0.94098 1.21545 1.00307 0.97073 0.83543 1.98367 1.94297 1.93625 1.12200 0.92083 0.92352 0.92380 0.85575 0.85997 0.86321 0.86001 0.85161 0.83416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.95 13.29 55.43 0.74 -24.21 16 2 C 0.07 1.87 5.46 -17.82 -0.10 1.77 16 3 Si 0.91 21.10 29.54 -169.99 -5.02 16.08 16 4 H -0.27 -6.28 7.11 56.52 0.40 -5.87 16 5 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 6 H -0.27 -6.36 7.11 56.52 0.40 -5.95 16 7 C -0.54 -14.75 9.39 -34.44 -0.32 -15.07 16 8 H 0.06 1.82 7.81 -52.48 -0.41 1.41 16 9 C 0.25 6.40 6.02 -5.19 -0.03 6.37 16 10 N -0.31 -7.20 3.59 -59.36 -0.21 -7.42 16 11 N -0.26 -5.77 12.24 33.42 0.41 -5.37 16 12 C 0.08 1.59 6.99 -82.78 -0.58 1.01 16 13 C 0.01 0.08 5.88 -104.89 -0.62 -0.54 16 14 C -0.10 -1.32 9.58 -39.26 -0.38 -1.69 16 15 C -0.12 -1.35 10.03 -39.63 -0.40 -1.75 16 16 C -0.12 -1.33 10.04 -39.52 -0.40 -1.73 16 17 C -0.12 -1.47 10.03 -39.63 -0.40 -1.87 16 18 C -0.10 -1.43 9.69 -39.26 -0.38 -1.81 16 19 C -0.26 -4.71 10.16 -39.67 -0.40 -5.11 16 20 C 0.13 2.69 7.44 -17.19 -0.13 2.56 16 21 Cl -0.01 -0.23 28.73 -51.86 -1.49 -1.72 16 22 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 23 H 0.06 1.50 7.78 -51.93 -0.40 1.10 16 24 H 0.06 1.56 8.14 -51.93 -0.42 1.14 16 25 H 0.13 1.43 7.04 -52.49 -0.37 1.06 16 26 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16 27 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 28 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 29 H 0.13 2.04 7.85 -52.48 -0.41 1.63 16 30 H 0.15 2.16 7.34 -52.48 -0.39 1.77 16 LS Contribution 287.86 15.07 4.34 4.34 Total: -1.00 -29.08 287.86 -8.17 -37.25 By element: Atomic # 1 Polarization: 1.72 SS G_CDS: -2.81 Total: -1.09 kcal Atomic # 6 Polarization: -13.73 SS G_CDS: -4.13 Total: -17.86 kcal Atomic # 7 Polarization: -37.93 SS G_CDS: 0.93 Total: -37.00 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 17 Polarization: -0.23 SS G_CDS: -1.49 Total: -1.72 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -29.08 -8.17 -37.25 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085018892.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.845 kcal (2) G-P(sol) polarization free energy of solvation -29.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.249 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds