Wall clock time and date at job start Mon Mar 30 2020 06:17:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00033 * 2 1 4 4 H 1.48500 * 109.46809 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47156 * 300.00027 * 3 2 1 6 6 H 1.48500 * 109.47113 * 60.00471 * 3 2 1 7 7 C 1.37885 * 119.99586 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99368 * 179.97438 * 7 2 1 9 9 C 1.50691 * 120.00003 * 359.97438 * 7 2 1 10 10 H 1.09004 * 109.47563 * 300.00261 * 9 7 2 11 11 O 1.42900 * 109.47453 * 60.00176 * 9 7 2 12 12 C 1.50701 * 109.46984 * 179.97438 * 9 7 2 13 13 C 1.38165 * 120.03340 * 265.00284 * 12 9 7 14 14 C 1.38245 * 120.05717 * 179.70111 * 13 12 9 15 15 C 1.38286 * 120.11203 * 0.02562 * 14 13 12 16 16 C 1.38119 * 120.05418 * 0.02562 * 15 14 13 17 17 C 1.38713 * 120.02363 * 84.72453 * 12 9 7 18 18 O 1.35901 * 120.05607 * 0.25615 * 17 12 9 19 19 C 1.42905 * 117.00063 * 179.97438 * 18 17 12 20 20 F 1.39900 * 109.46982 * 59.99893 * 19 18 17 21 21 F 1.39891 * 109.47161 * 180.02562 * 19 18 17 22 22 F 1.39907 * 109.46998 * 299.99920 * 19 18 17 23 23 H 0.96997 * 119.99568 * 359.97438 * 1 2 3 24 24 H 0.96703 * 113.99758 * 59.99596 * 11 9 7 25 25 H 1.07997 * 119.96912 * 359.72266 * 13 12 9 26 26 H 1.07999 * 119.94068 * 179.97438 * 14 13 12 27 27 H 1.08000 * 119.97222 * 180.02562 * 15 14 13 28 28 H 1.08005 * 120.02369 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 1 0.6245 -2.5571 0.8897 11 8 0.4289 -2.5746 -1.1670 12 6 2.2302 -3.6446 -0.0018 13 6 2.5994 -4.2374 -1.1940 14 6 3.5024 -5.2842 -1.1962 15 6 4.0380 -5.7411 -0.0060 16 6 3.6713 -5.1525 1.1886 17 6 2.7661 -4.1010 1.1935 18 8 2.4048 -3.5193 2.3674 19 6 2.9961 -4.0413 3.5591 20 9 4.3869 -3.9089 3.4862 21 9 2.5171 -3.3329 4.6662 22 9 2.6626 -5.3936 3.6914 23 1 -0.4849 0.8401 0.0004 24 1 0.9208 -2.5291 -1.9984 25 1 2.1825 -3.8825 -2.1248 26 1 3.7894 -5.7465 -2.1292 27 1 4.7435 -6.5587 -0.0104 28 1 4.0896 -5.5100 2.1179 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085878595.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:56 Heat of formation + Delta-G solvation = -240.456242 kcal Electronic energy + Delta-G solvation = -20199.274250 eV Core-core repulsion = 16378.669544 eV Total energy + Delta-G solvation = -3820.604706 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.060 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -51.47125 -49.18439 -49.05117 -41.30907 -38.83994 -37.33292 -34.32373 -32.32133 -31.27018 -28.61276 -26.98107 -25.22705 -23.58179 -22.36644 -20.63563 -20.19460 -19.90182 -19.15132 -17.90383 -17.20082 -16.74168 -16.32546 -16.20910 -16.03220 -15.75883 -15.52442 -15.46048 -15.29988 -15.17186 -14.96778 -14.67565 -14.44302 -14.02586 -13.46391 -13.24849 -12.85394 -12.79631 -12.61532 -12.17031 -12.07403 -11.27443 -10.79858 -10.40734 -9.79356 -9.34867 -8.15635 -6.42247 0.30933 0.40796 0.57263 1.37682 1.39211 1.51425 1.79498 2.36662 2.72743 2.77575 3.02077 3.08509 3.73576 3.80519 4.17207 4.23910 4.28378 4.52665 4.58923 4.95984 5.11518 5.35163 5.47109 5.54530 5.63155 5.80897 5.98582 6.09477 6.66644 7.28141 7.46033 8.87992 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.017895 B = 0.008664 C = 0.006794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.321013 B = 3231.071492 C = 4120.389377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.028 3.972 3 Si 0.959 3.041 4 H -0.266 1.266 5 H -0.272 1.272 6 H -0.279 1.279 7 C -0.567 4.567 8 H 0.052 0.948 9 C 0.268 3.732 10 H 0.027 0.973 11 O -0.573 6.573 12 C -0.112 4.112 13 C -0.095 4.095 14 C -0.126 4.126 15 C -0.092 4.092 16 C -0.196 4.196 17 C 0.078 3.922 18 O -0.321 6.321 19 C 0.605 3.395 20 F -0.163 7.163 21 F -0.135 7.135 22 F -0.162 7.162 23 H 0.263 0.737 24 H 0.360 0.640 25 H 0.142 0.858 26 H 0.165 0.835 27 H 0.168 0.832 28 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.439 -11.277 1.965 14.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.175 4.175 3 Si 0.784 3.216 4 H -0.190 1.190 5 H -0.198 1.198 6 H -0.205 1.205 7 C -0.604 4.604 8 H 0.070 0.930 9 C 0.211 3.789 10 H 0.045 0.955 11 O -0.378 6.378 12 C -0.113 4.113 13 C -0.112 4.112 14 C -0.143 4.143 15 C -0.110 4.110 16 C -0.214 4.214 17 C 0.036 3.964 18 O -0.242 6.242 19 C 0.515 3.485 20 F -0.146 7.146 21 F -0.116 7.116 22 F -0.145 7.145 23 H 0.072 0.928 24 H 0.206 0.794 25 H 0.160 0.840 26 H 0.183 0.817 27 H 0.185 0.815 28 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 8.690 -11.087 2.490 14.305 hybrid contribution 0.534 1.111 0.305 1.270 sum 9.223 -9.976 2.794 13.871 Atomic orbital electron populations 1.70207 1.07548 1.27499 1.48250 1.25880 0.95529 1.02765 0.93303 0.85512 0.79001 0.79136 0.77994 1.19046 1.19764 1.20497 1.21737 0.92908 0.91622 1.54175 0.92973 1.17977 0.86648 0.89142 0.85163 0.95506 1.86557 1.38836 1.96327 1.16077 1.20612 1.00412 0.98897 0.91351 1.21064 0.97552 0.96225 0.96406 1.21538 0.96548 0.96372 0.99880 1.21301 0.99380 0.99798 0.90488 1.21657 1.00203 0.97550 1.02013 1.18766 0.99252 0.95808 0.82544 1.86558 1.65733 1.58484 1.13386 1.19304 0.75014 0.74644 0.79585 1.93271 1.29839 1.95419 1.96023 1.93276 1.88585 1.79179 1.50594 1.93273 1.92194 1.33215 1.95768 0.92755 0.79351 0.84020 0.81738 0.81476 0.84124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.17 12.84 21.45 0.28 -53.89 15 2 C 0.03 1.58 5.40 84.66 0.46 2.03 15 3 Si 0.96 44.04 29.54 68.60 2.03 46.07 15 4 H -0.27 -11.85 7.11 99.48 0.71 -11.15 15 5 H -0.27 -12.01 7.11 99.48 0.71 -11.30 15 6 H -0.28 -12.63 7.11 99.48 0.71 -11.92 15 7 C -0.57 -31.88 8.75 25.60 0.22 -31.65 15 8 H 0.05 2.92 7.74 -2.91 -0.02 2.89 15 9 C 0.27 14.25 2.79 29.10 0.08 14.33 15 10 H 0.03 1.66 7.70 -2.39 -0.02 1.64 15 11 O -0.57 -29.75 12.38 -148.98 -1.84 -31.59 15 12 C -0.11 -4.82 5.01 -19.77 -0.10 -4.92 15 13 C -0.09 -3.22 9.30 22.25 0.21 -3.01 15 14 C -0.13 -3.21 10.04 22.28 0.22 -2.98 15 15 C -0.09 -2.27 10.04 22.25 0.22 -2.05 15 16 C -0.20 -6.05 8.26 22.37 0.18 -5.86 15 17 C 0.08 3.12 6.46 22.51 0.15 3.26 15 18 O -0.32 -13.50 9.51 -92.44 -0.88 -14.38 15 19 C 0.61 19.91 3.42 113.37 0.39 20.30 15 20 F -0.16 -4.96 15.56 44.97 0.70 -4.26 15 21 F -0.13 -4.36 17.53 44.97 0.79 -3.58 15 22 F -0.16 -4.74 15.56 44.97 0.70 -4.04 15 23 H 0.26 14.92 8.31 -92.71 -0.77 14.15 15 24 H 0.36 15.82 7.32 -74.06 -0.54 15.28 15 25 H 0.14 4.38 6.40 -2.91 -0.02 4.36 15 26 H 0.17 2.81 8.06 -2.91 -0.02 2.79 15 27 H 0.17 2.66 8.06 -2.91 -0.02 2.64 15 28 H 0.14 3.80 5.10 -2.91 -0.01 3.78 15 Total: -1.00 -67.56 262.40 4.49 -63.07 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: 0.69 Total: 13.16 kcal Atomic # 6 Polarization: -12.59 SS G_CDS: 2.04 Total: -10.55 kcal Atomic # 7 Polarization: -54.17 SS G_CDS: 0.28 Total: -53.89 kcal Atomic # 8 Polarization: -43.25 SS G_CDS: -2.72 Total: -45.98 kcal Atomic # 9 Polarization: -14.06 SS G_CDS: 2.19 Total: -11.87 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Total: -67.56 4.49 -63.07 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085878595.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -177.386 kcal (2) G-P(sol) polarization free energy of solvation -67.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -244.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -240.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds