Wall clock time and date at job start Mon Mar 30 2020 06:17:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86793 * 120.00128 * 2 1 4 4 H 1.48511 * 109.47132 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47318 * 300.00031 * 3 2 1 6 6 H 1.48497 * 109.47299 * 60.00398 * 3 2 1 7 7 C 1.37876 * 119.99497 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99662 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00494 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.46995 * 60.00378 * 9 7 2 11 11 O 1.42899 * 109.46879 * 300.00187 * 9 7 2 12 12 C 1.50708 * 109.47109 * 180.02562 * 9 7 2 13 13 C 1.38163 * 120.02715 * 95.02590 * 12 9 7 14 14 C 1.38243 * 120.05438 * 179.97438 * 13 12 9 15 15 C 1.38289 * 120.11362 * 359.97438 * 14 13 12 16 16 C 1.38125 * 120.05159 * 0.02562 * 15 14 13 17 17 C 1.38708 * 120.02785 * 275.00102 * 12 9 7 18 18 O 1.35899 * 120.05461 * 359.97438 * 17 12 9 19 19 C 1.42903 * 116.99930 * 180.02562 * 18 17 12 20 20 F 1.39899 * 109.46826 * 60.00682 * 19 18 17 21 21 F 1.39901 * 109.47086 * 180.02562 * 19 18 17 22 22 F 1.39895 * 109.47392 * 300.00490 * 19 18 17 23 23 H 0.97001 * 120.00256 * 359.97438 * 1 2 3 24 24 H 0.96699 * 113.99920 * 299.99386 * 11 9 7 25 25 H 1.08001 * 119.97024 * 359.97438 * 13 12 9 26 26 H 1.08004 * 119.94070 * 180.02562 * 14 13 12 27 27 H 1.07993 * 119.96940 * 180.28495 * 15 14 13 28 28 H 1.08000 * 120.02328 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8905 2.3963 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 1 0.6239 -2.5568 -0.8903 11 8 0.4298 -2.5751 1.1665 12 6 2.2302 -3.6447 -0.0005 13 6 2.5998 -4.2383 1.1911 14 6 3.4977 -5.2895 1.1917 15 6 4.0278 -5.7498 0.0003 16 6 3.6614 -5.1597 -1.1936 17 6 2.7609 -4.1043 -1.1969 18 8 2.3980 -3.5227 -2.3703 19 6 2.9839 -4.0481 -3.5632 20 9 2.6453 -5.3993 -3.6929 21 9 2.5048 -3.3386 -4.6696 22 9 4.3753 -3.9205 -3.4947 23 1 -0.4850 0.8400 0.0004 24 1 0.9222 -2.5300 1.9975 25 1 2.1869 -3.8808 2.1228 26 1 3.7851 -5.7524 2.1242 27 1 4.7255 -6.5741 0.0030 28 1 4.0760 -5.5194 -2.1238 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085878599.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:58 Heat of formation + Delta-G solvation = -219.611677 kcal Electronic energy + Delta-G solvation = -20197.071409 eV Core-core repulsion = 16377.370591 eV Total energy + Delta-G solvation = -3819.700818 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.060 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -50.17513 -47.88144 -47.77780 -39.89768 -37.36438 -35.54741 -32.21374 -30.78924 -29.94763 -26.69793 -25.65310 -23.44035 -22.24368 -20.79090 -19.29124 -18.88482 -18.55844 -17.11411 -16.46329 -15.77880 -14.94372 -14.86524 -14.62334 -14.58845 -14.35344 -14.22230 -14.10717 -13.99583 -13.86089 -13.51322 -12.92876 -12.87247 -12.49952 -11.77754 -11.64398 -11.11725 -11.00457 -10.94522 -10.79941 -10.20054 -9.34843 -8.76389 -8.49293 -8.38354 -7.86510 -6.05550 -4.24430 1.62207 1.75547 1.90720 3.13630 3.25601 3.33850 3.38091 4.01888 4.09519 4.31157 4.40404 5.01560 5.06314 5.22044 5.35122 5.61873 5.75139 5.90411 6.18426 6.35059 6.49211 6.62717 6.85595 6.95098 7.37631 7.64371 7.78419 8.04929 8.76530 9.23457 9.50230 10.98152 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.017908 B = 0.008654 C = 0.006788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.175818 B = 3234.571071 C = 4123.895221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.080 3.920 3 Si 0.892 3.108 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.560 4.560 8 H 0.058 0.942 9 C 0.262 3.738 10 H 0.075 0.925 11 O -0.558 6.558 12 C -0.072 4.072 13 C -0.089 4.089 14 C -0.138 4.138 15 C -0.108 4.108 16 C -0.193 4.193 17 C 0.101 3.899 18 O -0.287 6.287 19 C 0.599 3.401 20 F -0.173 7.173 21 F -0.135 7.135 22 F -0.171 7.171 23 H 0.262 0.738 24 H 0.346 0.654 25 H 0.133 0.867 26 H 0.121 0.879 27 H 0.122 0.878 28 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.137 -9.953 -2.786 12.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.126 4.126 3 Si 0.719 3.281 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.597 4.597 8 H 0.076 0.924 9 C 0.204 3.796 10 H 0.093 0.907 11 O -0.361 6.361 12 C -0.073 4.073 13 C -0.107 4.107 14 C -0.156 4.156 15 C -0.126 4.126 16 C -0.212 4.212 17 C 0.059 3.941 18 O -0.206 6.206 19 C 0.507 3.493 20 F -0.155 7.155 21 F -0.117 7.117 22 F -0.153 7.153 23 H 0.072 0.928 24 H 0.191 0.809 25 H 0.151 0.849 26 H 0.139 0.861 27 H 0.140 0.860 28 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 6.371 -9.751 -3.316 12.111 hybrid contribution 1.205 0.823 -0.061 1.461 sum 7.576 -8.928 -3.376 12.187 Atomic orbital electron populations 1.70077 1.05923 1.26584 1.46735 1.25025 0.94748 0.99157 0.93670 0.86555 0.80256 0.83505 0.77779 1.19623 1.20734 1.20756 1.21468 0.93125 0.90226 1.54904 0.92408 1.18443 0.86759 0.87553 0.86807 0.90710 1.86644 1.37993 1.96158 1.15311 1.20927 0.99031 0.98324 0.88999 1.20828 0.96962 0.95473 0.97440 1.21090 0.98612 0.98064 0.97805 1.20706 1.00282 0.99952 0.91691 1.21383 1.01163 0.98517 1.00128 1.18505 0.98028 0.94429 0.83156 1.86621 1.64880 1.57032 1.12093 1.19494 0.74914 0.74382 0.80461 1.93259 1.92113 1.34252 1.95909 1.93280 1.88529 1.78993 1.50866 1.93264 1.30464 1.95448 1.96113 0.92842 0.80944 0.84907 0.86055 0.86014 0.85744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.06 12.84 55.43 0.71 -24.35 15 2 C 0.08 2.23 5.40 -17.82 -0.10 2.14 15 3 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 15 4 H -0.27 -6.38 7.11 56.52 0.40 -5.98 15 5 H -0.28 -6.64 7.11 56.52 0.40 -6.24 15 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 15 7 C -0.56 -15.28 8.75 -34.44 -0.30 -15.58 15 8 H 0.06 1.58 7.74 -52.48 -0.41 1.18 15 9 C 0.26 6.65 2.79 -29.03 -0.08 6.57 15 10 H 0.08 2.12 7.69 -51.93 -0.40 1.72 15 11 O -0.56 -13.97 12.38 -35.23 -0.44 -14.41 15 12 C -0.07 -1.53 5.02 -104.47 -0.52 -2.05 15 13 C -0.09 -1.58 9.30 -39.61 -0.37 -1.95 15 14 C -0.14 -2.05 10.04 -39.56 -0.40 -2.44 15 15 C -0.11 -1.58 10.04 -39.60 -0.40 -1.98 15 16 C -0.19 -3.22 8.26 -39.43 -0.33 -3.55 15 17 C 0.10 2.02 6.45 -39.22 -0.25 1.76 15 18 O -0.29 -5.85 9.51 -19.42 -0.18 -6.04 15 19 C 0.60 9.89 3.42 101.05 0.35 10.24 15 20 F -0.17 -2.61 15.56 2.25 0.04 -2.58 15 21 F -0.14 -2.17 17.53 2.25 0.04 -2.13 15 22 F -0.17 -2.68 15.56 2.25 0.04 -2.65 15 23 H 0.26 7.21 8.31 -40.82 -0.34 6.87 15 24 H 0.35 7.42 7.32 45.56 0.33 7.75 15 25 H 0.13 2.13 6.40 -52.49 -0.34 1.80 15 26 H 0.12 1.41 8.06 -52.48 -0.42 0.98 15 27 H 0.12 1.38 8.06 -52.49 -0.42 0.96 15 28 H 0.12 1.86 5.10 -52.49 -0.27 1.59 15 LS Contribution 262.39 15.07 3.95 3.95 Total: -1.00 -30.12 262.39 -4.32 -34.44 By element: Atomic # 1 Polarization: 5.52 SS G_CDS: -1.06 Total: 4.46 kcal Atomic # 6 Polarization: -4.45 SS G_CDS: -2.40 Total: -6.85 kcal Atomic # 7 Polarization: -25.06 SS G_CDS: 0.71 Total: -24.35 kcal Atomic # 8 Polarization: -19.82 SS G_CDS: -0.62 Total: -20.45 kcal Atomic # 9 Polarization: -7.46 SS G_CDS: 0.11 Total: -7.35 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -30.12 -4.32 -34.44 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085878599.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -185.171 kcal (2) G-P(sol) polarization free energy of solvation -30.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -215.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -219.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds