Wall clock time and date at job start Mon Mar 30 2020 06:18:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47057 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 119.99828 * 3 2 1 6 6 H 1.48504 * 109.47102 * 240.00177 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 H 1.09006 * 109.46863 * 59.99666 * 9 7 2 11 11 O 1.42905 * 109.46817 * 300.00159 * 9 7 2 12 12 C 1.50696 * 109.47259 * 180.02562 * 9 7 2 13 13 C 1.38262 * 119.94622 * 84.72747 * 12 9 7 14 14 C 1.38148 * 120.05561 * 179.72424 * 13 12 9 15 15 C 1.38729 * 119.94428 * 0.55020 * 14 13 12 16 16 O 1.35902 * 120.05690 * 179.75115 * 15 14 13 17 17 C 1.42899 * 116.99512 * 359.96997 * 16 15 14 18 18 F 1.39896 * 109.47050 * 60.00676 * 17 16 15 19 19 F 1.39903 * 109.46354 * 180.02562 * 17 16 15 20 20 F 1.39898 * 109.47351 * 300.00222 * 17 16 15 21 21 C 1.38734 * 119.88944 * 359.72019 * 15 14 13 22 22 C 1.38154 * 119.94084 * 0.02562 * 21 15 14 23 23 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 24 24 H 0.96699 * 113.99284 * 299.99770 * 11 9 7 25 25 H 1.08002 * 119.96880 * 359.97438 * 13 12 9 26 26 H 1.08002 * 120.02371 * 180.27176 * 14 13 12 27 27 H 1.07999 * 120.03328 * 179.97438 * 21 15 14 28 28 H 1.07994 * 119.96693 * 180.02562 * 22 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 1 0.6247 -2.5571 -0.8897 11 8 0.4291 -2.5746 1.1670 12 6 2.2304 -3.6445 0.0018 13 6 2.7617 -4.0971 1.1954 14 6 3.6553 -5.1506 1.1997 15 6 4.0282 -5.7472 0.0041 16 8 4.9110 -6.7805 0.0052 17 6 5.4159 -7.2008 1.2742 18 9 4.3534 -7.6133 2.0855 19 9 6.3052 -8.2654 1.0927 20 9 6.0839 -6.1350 1.8866 21 6 3.4980 -5.2877 -1.1928 22 6 2.6007 -4.2372 -1.1912 23 1 -0.4850 -0.8401 -0.0004 24 1 0.9210 -2.5290 1.9983 25 1 2.4747 -3.6291 2.1255 26 1 4.0666 -5.5065 2.1328 27 1 3.7870 -5.7502 -2.1249 28 1 2.1874 -3.8794 -2.1226 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085878617.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:02 Heat of formation + Delta-G solvation = -229.173008 kcal Electronic energy + Delta-G solvation = -19536.767729 eV Core-core repulsion = 15716.652300 eV Total energy + Delta-G solvation = -3820.115428 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.060 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -50.48967 -48.23394 -48.06678 -40.05322 -37.95824 -35.58448 -32.28292 -30.79983 -30.40446 -26.67195 -25.50210 -23.24430 -22.63206 -21.07134 -19.53310 -19.18983 -19.00640 -17.39922 -16.84658 -16.05903 -15.21318 -15.14145 -14.92979 -14.71633 -14.54122 -14.42885 -14.17200 -14.08418 -13.82462 -13.57638 -13.28662 -13.04537 -12.66841 -12.38953 -12.06964 -11.41058 -10.86116 -10.74939 -10.29636 -10.16914 -9.63068 -8.78701 -8.63273 -8.45706 -7.83948 -6.45531 -4.31964 1.51367 1.54882 1.60896 2.83242 3.38145 3.38368 3.58061 3.75675 3.84687 4.09303 4.45056 4.87196 4.96149 5.20825 5.34459 5.52434 5.70823 5.72856 5.93084 6.16925 6.34719 6.59545 6.69279 6.75395 7.24167 7.38734 7.81236 8.24121 8.73630 8.90384 9.52928 10.93072 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.036228 B = 0.004838 C = 0.004717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.704208 B = 5786.504645 C = 5934.347877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.037 3.963 3 Si 1.068 2.932 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.287 1.287 7 C -0.644 4.644 8 H 0.053 0.947 9 C 0.242 3.758 10 H 0.064 0.936 11 O -0.577 6.577 12 C -0.074 4.074 13 C -0.078 4.078 14 C -0.186 4.186 15 C 0.070 3.930 16 O -0.313 6.313 17 C 0.603 3.397 18 F -0.167 7.167 19 F -0.138 7.138 20 F -0.167 7.167 21 C -0.121 4.121 22 C -0.087 4.087 23 H 0.284 0.716 24 H 0.355 0.645 25 H 0.128 0.872 26 H 0.126 0.874 27 H 0.131 0.869 28 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.414 -12.722 1.646 15.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.173 4.173 3 Si 0.895 3.105 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.213 1.213 7 C -0.681 4.681 8 H 0.071 0.929 9 C 0.185 3.815 10 H 0.082 0.918 11 O -0.382 6.382 12 C -0.075 4.075 13 C -0.096 4.096 14 C -0.205 4.205 15 C 0.029 3.971 16 O -0.234 6.234 17 C 0.512 3.488 18 F -0.149 7.149 19 F -0.119 7.119 20 F -0.149 7.149 21 C -0.139 4.139 22 C -0.105 4.105 23 H 0.096 0.904 24 H 0.201 0.799 25 H 0.146 0.854 26 H 0.144 0.856 27 H 0.149 0.851 28 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 8.804 -11.253 1.070 14.328 hybrid contribution 1.007 -1.788 0.707 2.171 sum 9.811 -13.042 1.777 16.416 Atomic orbital electron populations 1.70654 1.06905 1.32310 1.42327 1.25846 0.96442 1.02466 0.92520 0.83575 0.74946 0.75234 0.76696 1.20640 1.21309 1.21317 1.22333 0.94514 0.91396 1.59859 0.92916 1.18696 0.87184 0.89495 0.86116 0.91842 1.86539 1.39064 1.96443 1.16142 1.21293 0.97525 0.96271 0.92371 1.20711 0.95246 0.94811 0.98878 1.21375 1.02824 1.00363 0.95890 1.18573 0.93484 0.89157 0.95873 1.86357 1.59522 1.50944 1.26558 1.19364 0.75847 0.75610 0.77998 1.93291 1.57151 1.90549 1.73945 1.93277 1.67784 1.55743 1.95144 1.93299 1.81220 1.56863 1.83474 1.20318 0.99525 0.98949 0.95155 1.20890 0.96599 0.94207 0.98795 0.90370 0.79915 0.85385 0.85649 0.85116 0.84815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.07 13.53 55.43 0.75 -25.32 15 2 C 0.04 1.00 5.40 -17.82 -0.10 0.91 15 3 Si 1.07 24.21 29.90 -169.99 -5.08 19.13 15 4 H -0.28 -6.41 7.11 56.52 0.40 -6.01 15 5 H -0.29 -6.24 7.11 56.52 0.40 -5.84 15 6 H -0.29 -6.24 7.11 56.52 0.40 -5.83 15 7 C -0.64 -17.12 8.75 -34.44 -0.30 -17.42 15 8 H 0.05 1.41 7.74 -52.48 -0.41 1.01 15 9 C 0.24 5.81 2.67 -29.03 -0.08 5.74 15 10 H 0.06 1.62 7.92 -51.93 -0.41 1.21 15 11 O -0.58 -13.84 11.81 -35.23 -0.42 -14.26 15 12 C -0.07 -1.50 4.94 -104.61 -0.52 -2.02 15 13 C -0.08 -1.43 9.32 -39.61 -0.37 -1.80 15 14 C -0.19 -3.06 8.26 -39.43 -0.33 -3.38 15 15 C 0.07 1.13 6.48 -39.22 -0.25 0.88 15 16 O -0.31 -4.56 10.37 -19.43 -0.20 -4.76 15 17 C 0.60 7.69 3.42 101.05 0.35 8.03 15 18 F -0.17 -2.13 15.56 2.25 0.04 -2.10 15 19 F -0.14 -1.59 17.53 2.25 0.04 -1.55 15 20 F -0.17 -2.17 15.56 2.25 0.04 -2.14 15 21 C -0.12 -1.92 9.99 -39.43 -0.39 -2.31 15 22 C -0.09 -1.55 9.67 -39.60 -0.38 -1.93 15 23 H 0.28 8.46 6.47 -40.82 -0.26 8.19 15 24 H 0.35 7.52 7.38 45.56 0.34 7.85 15 25 H 0.13 2.18 6.61 -52.49 -0.35 1.84 15 26 H 0.13 1.84 5.10 -52.49 -0.27 1.57 15 27 H 0.13 1.71 8.06 -52.49 -0.42 1.29 15 28 H 0.13 2.20 8.06 -52.49 -0.42 1.78 15 LS Contribution 261.83 15.07 3.95 3.95 Total: -1.00 -29.04 261.83 -4.27 -33.31 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -1.00 Total: 7.05 kcal Atomic # 6 Polarization: -10.94 SS G_CDS: -2.37 Total: -13.31 kcal Atomic # 7 Polarization: -26.07 SS G_CDS: 0.75 Total: -25.32 kcal Atomic # 8 Polarization: -18.40 SS G_CDS: -0.62 Total: -19.01 kcal Atomic # 9 Polarization: -5.90 SS G_CDS: 0.11 Total: -5.79 kcal Atomic # 14 Polarization: 24.21 SS G_CDS: -5.08 Total: 19.13 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -29.04 -4.27 -33.31 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085878617.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -195.861 kcal (2) G-P(sol) polarization free energy of solvation -29.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -224.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -229.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds