Wall clock time and date at job start Mon Mar 30 2020 06:18:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47057 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 119.99828 * 3 2 1 6 6 H 1.48504 * 109.47102 * 240.00177 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 H 1.09006 * 109.46863 * 59.99666 * 9 7 2 11 11 O 1.42905 * 109.46817 * 300.00159 * 9 7 2 12 12 C 1.50696 * 109.47259 * 180.02562 * 9 7 2 13 13 C 1.38262 * 119.94622 * 84.72747 * 12 9 7 14 14 C 1.38148 * 120.05561 * 179.72424 * 13 12 9 15 15 C 1.38729 * 119.94428 * 0.55020 * 14 13 12 16 16 O 1.35902 * 120.05690 * 179.75115 * 15 14 13 17 17 C 1.42899 * 116.99512 * 359.96997 * 16 15 14 18 18 F 1.39896 * 109.47050 * 60.00676 * 17 16 15 19 19 F 1.39903 * 109.46354 * 180.02562 * 17 16 15 20 20 F 1.39898 * 109.47351 * 300.00222 * 17 16 15 21 21 C 1.38734 * 119.88944 * 359.72019 * 15 14 13 22 22 C 1.38154 * 119.94084 * 0.02562 * 21 15 14 23 23 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 24 24 H 0.96699 * 113.99284 * 299.99770 * 11 9 7 25 25 H 1.08002 * 119.96880 * 359.97438 * 13 12 9 26 26 H 1.08002 * 120.02371 * 180.27176 * 14 13 12 27 27 H 1.07999 * 120.03328 * 179.97438 * 21 15 14 28 28 H 1.07994 * 119.96693 * 180.02562 * 22 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 1 0.6247 -2.5571 -0.8897 11 8 0.4291 -2.5746 1.1670 12 6 2.2304 -3.6445 0.0018 13 6 2.7617 -4.0971 1.1954 14 6 3.6553 -5.1506 1.1997 15 6 4.0282 -5.7472 0.0041 16 8 4.9110 -6.7805 0.0052 17 6 5.4159 -7.2008 1.2742 18 9 4.3534 -7.6133 2.0855 19 9 6.3052 -8.2654 1.0927 20 9 6.0839 -6.1350 1.8866 21 6 3.4980 -5.2877 -1.1928 22 6 2.6007 -4.2372 -1.1912 23 1 -0.4850 -0.8401 -0.0004 24 1 0.9210 -2.5290 1.9983 25 1 2.4747 -3.6291 2.1255 26 1 4.0666 -5.5065 2.1328 27 1 3.7870 -5.7502 -2.1249 28 1 2.1874 -3.8794 -2.1226 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085878617.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:02 Heat of formation + Delta-G solvation = -248.169124 kcal Electronic energy + Delta-G solvation = -19537.591462 eV Core-core repulsion = 15716.652300 eV Total energy + Delta-G solvation = -3820.939162 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.060 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -51.50256 -49.21638 -49.09540 -41.34083 -39.40418 -37.30514 -34.34623 -32.15942 -31.90185 -28.29531 -26.86351 -25.01026 -23.93336 -22.58469 -20.72892 -20.21627 -20.08176 -19.41832 -18.27927 -17.47342 -16.50669 -16.29869 -16.23300 -15.85653 -15.66803 -15.56648 -15.49786 -15.25166 -15.21213 -15.06767 -14.89430 -14.43595 -14.26311 -14.09872 -13.59752 -12.92795 -12.62175 -12.27936 -12.05709 -11.93795 -11.45560 -10.67188 -10.34179 -10.10079 -9.39129 -8.60097 -6.48768 0.17200 0.26017 0.41901 1.55069 1.61196 1.75682 1.81318 2.50829 2.62993 2.72433 2.94460 3.14706 3.59667 3.68826 3.94376 4.04707 4.13221 4.33486 4.42572 4.83000 4.96841 5.11406 5.18855 5.33203 5.71031 5.81320 5.90002 6.11262 6.54628 7.07575 7.45490 8.75006 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.036228 B = 0.004838 C = 0.004717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.704208 B = 5786.504645 C = 5934.347877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.013 4.013 3 Si 1.114 2.886 4 H -0.285 1.285 5 H -0.270 1.270 6 H -0.271 1.271 7 C -0.646 4.646 8 H 0.049 0.951 9 C 0.244 3.756 10 H 0.038 0.962 11 O -0.588 6.588 12 C -0.104 4.104 13 C -0.085 4.085 14 C -0.184 4.184 15 C 0.077 3.923 16 O -0.313 6.313 17 C 0.607 3.393 18 F -0.165 7.165 19 F -0.128 7.128 20 F -0.166 7.166 21 C -0.114 4.114 22 C -0.092 4.092 23 H 0.269 0.731 24 H 0.365 0.635 25 H 0.133 0.867 26 H 0.144 0.856 27 H 0.163 0.837 28 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.311 -13.611 1.698 17.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.215 4.215 3 Si 0.935 3.065 4 H -0.211 1.211 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.684 4.684 8 H 0.067 0.933 9 C 0.187 3.813 10 H 0.055 0.945 11 O -0.395 6.395 12 C -0.104 4.104 13 C -0.103 4.103 14 C -0.203 4.203 15 C 0.035 3.965 16 O -0.233 6.233 17 C 0.517 3.483 18 F -0.148 7.148 19 F -0.109 7.109 20 F -0.148 7.148 21 C -0.132 4.132 22 C -0.110 4.110 23 H 0.080 0.920 24 H 0.213 0.787 25 H 0.151 0.849 26 H 0.161 0.839 27 H 0.180 0.820 28 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 10.721 -12.172 1.129 16.260 hybrid contribution 0.482 -1.666 0.705 1.872 sum 11.203 -13.838 1.834 17.898 Atomic orbital electron populations 1.70787 1.07959 1.31355 1.45239 1.27246 0.96447 1.06213 0.91643 0.82984 0.74138 0.71401 0.77946 1.21072 1.19553 1.19602 1.22638 0.94430 0.92768 1.58532 0.93314 1.18449 0.87281 0.90467 0.85148 0.94451 1.86475 1.39671 1.96548 1.16762 1.20986 0.98510 0.96619 0.94314 1.20774 0.95661 0.95492 0.98389 1.21519 1.02149 0.99609 0.97003 1.18686 0.92977 0.88968 0.95829 1.86353 1.59016 1.50230 1.27712 1.19269 0.75890 0.75742 0.77444 1.93301 1.57168 1.90503 1.73782 1.93308 1.67370 1.55183 1.95035 1.93304 1.81182 1.56984 1.83374 1.20558 0.98225 0.97876 0.96534 1.21005 0.96995 0.94715 0.98252 0.92015 0.78734 0.84926 0.83856 0.81962 0.84188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.07 13.53 21.45 0.29 -54.78 15 2 C -0.01 -0.71 5.40 84.65 0.46 -0.26 15 3 Si 1.11 48.44 29.90 68.60 2.05 50.49 15 4 H -0.29 -12.52 7.11 99.48 0.71 -11.81 15 5 H -0.27 -10.95 7.11 99.48 0.71 -10.25 15 6 H -0.27 -10.99 7.11 99.48 0.71 -10.28 15 7 C -0.65 -34.70 8.75 25.60 0.22 -34.48 15 8 H 0.05 2.60 7.74 -2.91 -0.02 2.58 15 9 C 0.24 11.98 2.67 29.10 0.08 12.05 15 10 H 0.04 2.00 7.92 -2.38 -0.02 1.98 15 11 O -0.59 -28.92 11.81 -148.98 -1.76 -30.68 15 12 C -0.10 -4.19 4.94 -19.85 -0.10 -4.29 15 13 C -0.09 -3.03 9.32 22.25 0.21 -2.83 15 14 C -0.18 -5.66 8.26 22.37 0.18 -5.48 15 15 C 0.08 2.28 6.48 22.51 0.15 2.42 15 16 O -0.31 -8.10 10.37 -92.45 -0.96 -9.06 15 17 C 0.61 13.72 3.42 113.37 0.39 14.11 15 18 F -0.17 -3.77 15.56 44.97 0.70 -3.07 15 19 F -0.13 -2.57 17.53 44.97 0.79 -1.78 15 20 F -0.17 -3.88 15.56 44.97 0.70 -3.18 15 21 C -0.11 -3.31 9.99 22.37 0.22 -3.08 15 22 C -0.09 -3.18 9.67 22.26 0.22 -2.96 15 23 H 0.27 16.59 6.47 -92.71 -0.60 15.99 15 24 H 0.37 15.76 7.38 -74.06 -0.55 15.22 15 25 H 0.13 4.45 6.61 -2.91 -0.02 4.44 15 26 H 0.14 3.82 5.10 -2.91 -0.01 3.81 15 27 H 0.16 3.65 8.06 -2.91 -0.02 3.63 15 28 H 0.14 4.55 8.06 -2.91 -0.02 4.52 15 Total: -1.00 -61.71 261.83 4.69 -57.02 By element: Atomic # 1 Polarization: 18.98 SS G_CDS: 0.85 Total: 19.83 kcal Atomic # 6 Polarization: -26.82 SS G_CDS: 2.03 Total: -24.79 kcal Atomic # 7 Polarization: -55.07 SS G_CDS: 0.29 Total: -54.78 kcal Atomic # 8 Polarization: -37.02 SS G_CDS: -2.72 Total: -39.74 kcal Atomic # 9 Polarization: -10.21 SS G_CDS: 2.19 Total: -8.03 kcal Atomic # 14 Polarization: 48.44 SS G_CDS: 2.05 Total: 50.49 kcal Total: -61.71 4.69 -57.02 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085878617.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -191.152 kcal (2) G-P(sol) polarization free energy of solvation -61.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -252.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -248.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds