Wall clock time and date at job start Mon Mar 30 2020 06:30:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 119.99837 * 2 1 4 4 H 1.48503 * 109.47030 * 240.00118 * 3 2 1 5 5 H 1.48500 * 109.46852 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47081 * 120.00223 * 3 2 1 7 7 C 1.37873 * 119.99964 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99979 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00365 * 0.02562 * 7 2 1 10 10 H 1.08994 * 109.46789 * 59.99908 * 9 7 2 11 11 N 1.46898 * 109.46585 * 299.99900 * 9 7 2 12 12 C 1.50702 * 109.47203 * 180.02562 * 9 7 2 13 13 C 1.36537 * 120.03758 * 99.99968 * 12 9 7 14 14 C 1.40769 * 118.17651 * 179.97438 * 13 12 9 15 15 C 1.40428 * 121.35870 * 180.02562 * 14 13 12 16 16 C 1.36147 * 119.61781 * 180.02562 * 15 14 13 17 17 C 1.39351 * 120.86735 * 359.96026 * 16 15 14 18 18 C 1.36085 * 121.06613 * 0.02562 * 17 16 15 19 19 C 1.40589 * 119.75035 * 0.02562 * 18 17 16 20 20 N 1.33682 * 121.06369 * 180.02562 * 19 18 17 21 21 C 1.31217 * 121.30786 * 180.02562 * 20 19 18 22 22 Cl 1.73592 * 119.14608 * 179.97438 * 21 20 19 23 23 H 0.96999 * 120.00461 * 0.02562 * 1 2 3 24 24 H 1.00901 * 110.99515 * 176.04493 * 11 9 7 25 25 H 1.00895 * 111.00383 * 299.99462 * 11 9 7 26 26 H 1.08004 * 120.91544 * 359.97438 * 13 12 9 27 27 H 1.07996 * 120.18869 * 359.94359 * 15 14 13 28 28 H 1.07997 * 119.56406 * 179.97438 * 16 15 14 29 29 H 1.08003 * 119.46179 * 180.29538 * 17 16 15 30 30 H 1.08005 * 120.12162 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7464 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4992 -0.0017 10 1 0.6248 -2.5563 -0.8919 11 7 0.4061 -2.5778 1.1974 12 6 2.2304 -3.6446 -0.0015 13 6 2.5177 -4.2980 1.1625 14 6 3.4376 -5.3625 1.1176 15 6 3.7812 -6.0807 2.2744 16 6 4.6756 -7.1038 2.1904 17 6 5.2547 -7.4488 0.9708 18 6 4.9443 -6.7744 -0.1697 19 6 4.0258 -5.7111 -0.1234 20 7 3.7015 -5.0311 -1.2278 21 6 2.8452 -4.0376 -1.1900 22 17 2.4653 -3.1926 -2.6580 23 1 -0.4851 0.8400 -0.0004 24 1 -0.1578 -3.4144 1.1881 25 1 0.9637 -2.5270 2.0367 26 1 2.0519 -4.0061 2.0922 27 1 3.3396 -5.8221 3.2254 28 1 4.9395 -7.6552 3.0807 29 1 5.9579 -8.2675 0.9294 30 1 5.4026 -7.0545 -1.1067 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095684499.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:37 Heat of formation + Delta-G solvation = 50.690220 kcal Electronic energy + Delta-G solvation = -16813.143594 eV Core-core repulsion = 14020.022602 eV Total energy + Delta-G solvation = -2793.120992 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.057 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.59827 -37.40357 -35.80236 -35.03887 -32.76220 -31.45530 -29.96741 -29.16414 -26.32610 -24.06852 -23.41297 -21.87194 -20.82342 -17.85377 -17.13808 -16.53733 -16.36897 -14.76641 -14.64737 -14.39056 -14.22960 -14.00684 -13.77142 -13.28356 -12.73087 -12.38139 -12.19453 -11.64331 -11.55453 -11.23049 -10.85460 -10.78528 -10.60145 -10.48640 -10.26659 -9.89865 -9.31131 -9.28871 -8.47593 -8.17583 -7.96811 -7.27508 -5.92444 -4.07647 0.56781 1.04823 2.21226 2.37465 3.07874 3.33873 3.38380 3.42140 4.28743 4.47114 4.64825 4.77219 4.93760 5.11323 5.19112 5.27188 5.34862 5.47330 5.65856 5.92497 6.06445 6.13866 6.27728 6.30723 6.46256 6.60675 6.72058 6.98523 7.31268 7.83839 7.99755 8.07571 8.48615 8.85196 9.03670 9.60753 11.11875 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.025210 B = 0.006562 C = 0.005925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.400077 B = 4266.008225 C = 4724.851962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.844 5.844 2 C 0.089 3.911 3 Si 0.884 3.116 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.278 1.278 7 C -0.526 4.526 8 H 0.052 0.948 9 C 0.257 3.743 10 H 0.065 0.935 11 N -0.808 5.808 12 C -0.108 4.108 13 C -0.078 4.078 14 C -0.094 4.094 15 C -0.095 4.095 16 C -0.124 4.124 17 C -0.114 4.114 18 C -0.088 4.088 19 C 0.124 3.876 20 N -0.482 5.482 21 C 0.223 3.777 22 Cl -0.014 7.014 23 H 0.258 0.742 24 H 0.300 0.700 25 H 0.318 0.682 26 H 0.142 0.858 27 H 0.128 0.872 28 H 0.123 0.877 29 H 0.125 0.875 30 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.318 -12.278 2.766 14.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.478 5.478 2 C -0.119 4.119 3 Si 0.711 3.289 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.204 1.204 7 C -0.564 4.564 8 H 0.070 0.930 9 C 0.146 3.854 10 H 0.082 0.918 11 N -0.335 5.335 12 C -0.113 4.113 13 C -0.104 4.104 14 C -0.096 4.096 15 C -0.114 4.114 16 C -0.142 4.142 17 C -0.134 4.134 18 C -0.107 4.107 19 C 0.002 3.998 20 N -0.193 5.193 21 C 0.043 3.957 22 Cl 0.015 6.985 23 H 0.067 0.933 24 H 0.111 0.889 25 H 0.132 0.868 26 H 0.159 0.841 27 H 0.146 0.854 28 H 0.141 0.859 29 H 0.143 0.857 30 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 6.189 -11.709 1.611 13.342 hybrid contribution 0.744 0.374 0.848 1.189 sum 6.933 -11.335 2.459 13.513 Atomic orbital electron populations 1.70074 1.05614 1.25977 1.46180 1.24864 0.94618 0.98392 0.94005 0.86824 0.79796 0.83619 0.78667 1.20207 1.21240 1.20352 1.20583 0.91972 0.88829 1.55065 0.92997 1.18346 0.87286 0.88054 0.91682 0.91787 1.59151 1.27869 1.42190 1.04248 1.22352 0.99398 0.98697 0.90858 1.21257 0.96539 0.93867 0.98747 1.18897 0.98583 0.97562 0.94579 1.20963 0.97802 0.95433 0.97157 1.20832 0.97631 0.97902 0.97843 1.20779 1.00232 0.99999 0.92375 1.20722 0.96694 0.94186 0.99106 1.18594 0.97461 0.96082 0.87670 1.67320 1.14307 1.07161 1.30538 1.21901 0.93357 0.91476 0.88921 1.98403 1.91846 1.74358 1.33932 0.93252 0.88901 0.86847 0.84074 0.85435 0.85912 0.85703 0.85072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -23.66 12.77 55.43 0.71 -22.95 16 2 C 0.09 2.38 5.39 -17.82 -0.10 2.29 16 3 Si 0.88 20.98 29.54 -169.99 -5.02 15.96 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.53 -13.78 8.45 -34.44 -0.29 -14.07 16 8 H 0.05 1.40 7.74 -52.48 -0.41 0.99 16 9 C 0.26 6.01 2.30 -70.01 -0.16 5.85 16 10 H 0.06 1.65 7.33 -51.93 -0.38 1.27 16 11 N -0.81 -17.63 8.02 -6.65 -0.05 -17.68 16 12 C -0.11 -2.23 5.00 -104.78 -0.52 -2.75 16 13 C -0.08 -1.40 9.06 -39.24 -0.36 -1.75 16 14 C -0.09 -1.57 5.74 -106.80 -0.61 -2.18 16 15 C -0.09 -1.25 9.77 -39.51 -0.39 -1.63 16 16 C -0.12 -1.40 9.96 -39.92 -0.40 -1.80 16 17 C -0.11 -1.31 9.94 -39.94 -0.40 -1.71 16 18 C -0.09 -1.25 9.98 -39.47 -0.39 -1.64 16 19 C 0.12 2.17 6.60 -84.86 -0.56 1.61 16 20 N -0.48 -9.48 10.31 -8.10 -0.08 -9.56 16 21 C 0.22 4.61 7.25 -17.36 -0.13 4.49 16 22 Cl -0.01 -0.28 27.38 -51.86 -1.42 -1.70 16 23 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 24 H 0.30 5.79 9.05 -39.29 -0.36 5.44 16 25 H 0.32 6.50 7.30 -39.29 -0.29 6.21 16 26 H 0.14 2.25 6.29 -52.48 -0.33 1.92 16 27 H 0.13 1.38 8.06 -52.49 -0.42 0.95 16 28 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 29 H 0.13 1.04 8.06 -52.48 -0.42 0.62 16 30 H 0.13 1.66 8.06 -52.48 -0.42 1.23 16 LS Contribution 277.03 15.07 4.17 4.17 Total: -1.00 -29.32 277.03 -8.58 -37.91 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: -2.59 Total: 7.15 kcal Atomic # 6 Polarization: -9.00 SS G_CDS: -4.30 Total: -13.30 kcal Atomic # 7 Polarization: -50.76 SS G_CDS: 0.57 Total: -50.19 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Atomic # 17 Polarization: -0.28 SS G_CDS: -1.42 Total: -1.70 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -29.32 -8.58 -37.91 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095684499.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.596 kcal (2) G-P(sol) polarization free energy of solvation -29.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.906 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds