Wall clock time and date at job start Mon Mar 30 2020 06:30:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 119.99837 * 2 1 4 4 H 1.48503 * 109.47030 * 240.00118 * 3 2 1 5 5 H 1.48500 * 109.46852 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47081 * 120.00223 * 3 2 1 7 7 C 1.37873 * 119.99964 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99979 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00365 * 0.02562 * 7 2 1 10 10 H 1.08994 * 109.46789 * 59.99908 * 9 7 2 11 11 N 1.46898 * 109.46585 * 299.99900 * 9 7 2 12 12 C 1.50702 * 109.47203 * 180.02562 * 9 7 2 13 13 C 1.36537 * 120.03758 * 99.99968 * 12 9 7 14 14 C 1.40769 * 118.17651 * 179.97438 * 13 12 9 15 15 C 1.40428 * 121.35870 * 180.02562 * 14 13 12 16 16 C 1.36147 * 119.61781 * 180.02562 * 15 14 13 17 17 C 1.39351 * 120.86735 * 359.96026 * 16 15 14 18 18 C 1.36085 * 121.06613 * 0.02562 * 17 16 15 19 19 C 1.40589 * 119.75035 * 0.02562 * 18 17 16 20 20 N 1.33682 * 121.06369 * 180.02562 * 19 18 17 21 21 C 1.31217 * 121.30786 * 180.02562 * 20 19 18 22 22 Cl 1.73592 * 119.14608 * 179.97438 * 21 20 19 23 23 H 0.96999 * 120.00461 * 0.02562 * 1 2 3 24 24 H 1.00901 * 110.99515 * 176.04493 * 11 9 7 25 25 H 1.00895 * 111.00383 * 299.99462 * 11 9 7 26 26 H 1.08004 * 120.91544 * 359.97438 * 13 12 9 27 27 H 1.07996 * 120.18869 * 359.94359 * 15 14 13 28 28 H 1.07997 * 119.56406 * 179.97438 * 16 15 14 29 29 H 1.08003 * 119.46179 * 180.29538 * 17 16 15 30 30 H 1.08005 * 120.12162 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7464 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4992 -0.0017 10 1 0.6248 -2.5563 -0.8919 11 7 0.4061 -2.5778 1.1974 12 6 2.2304 -3.6446 -0.0015 13 6 2.5177 -4.2980 1.1625 14 6 3.4376 -5.3625 1.1176 15 6 3.7812 -6.0807 2.2744 16 6 4.6756 -7.1038 2.1904 17 6 5.2547 -7.4488 0.9708 18 6 4.9443 -6.7744 -0.1697 19 6 4.0258 -5.7111 -0.1234 20 7 3.7015 -5.0311 -1.2278 21 6 2.8452 -4.0376 -1.1900 22 17 2.4653 -3.1926 -2.6580 23 1 -0.4851 0.8400 -0.0004 24 1 -0.1578 -3.4144 1.1881 25 1 0.9637 -2.5270 2.0367 26 1 2.0519 -4.0061 2.0922 27 1 3.3396 -5.8221 3.2254 28 1 4.9395 -7.6552 3.0807 29 1 5.9579 -8.2675 0.9294 30 1 5.4026 -7.0545 -1.1067 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095684499.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:37 Heat of formation + Delta-G solvation = 31.576818 kcal Electronic energy + Delta-G solvation = -16813.972413 eV Core-core repulsion = 14020.022602 eV Total energy + Delta-G solvation = -2793.949811 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.057 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.88112 -38.69059 -37.31817 -36.58632 -34.34862 -33.12141 -31.19632 -30.52127 -28.15324 -25.57896 -24.74497 -23.03016 -22.43718 -19.12216 -18.49618 -18.41132 -17.68735 -16.54728 -16.16869 -15.72031 -15.57350 -15.38721 -15.02643 -14.78100 -14.17685 -14.01361 -13.55032 -13.20274 -12.87930 -12.73778 -12.57703 -12.38446 -12.12587 -11.96134 -11.81230 -11.61965 -11.05258 -10.71426 -10.51539 -9.50602 -9.20776 -8.97001 -7.96168 -6.15664 -0.65585 -0.20874 0.89667 0.98793 1.43639 1.45169 1.51494 1.89103 2.48733 3.06195 3.27507 3.40883 3.63657 3.77692 3.86240 4.10094 4.24489 4.37614 4.41502 4.50704 4.76992 4.89184 5.03529 5.10084 5.38448 5.43998 5.50402 5.52880 5.76122 5.90612 6.16159 6.60818 6.65740 7.07937 7.22991 7.54969 9.07098 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.025210 B = 0.006562 C = 0.005925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.400077 B = 4266.008225 C = 4724.851962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.045 3.955 3 Si 0.936 3.064 4 H -0.278 1.278 5 H -0.283 1.283 6 H -0.273 1.273 7 C -0.528 4.528 8 H 0.037 0.963 9 C 0.268 3.732 10 H 0.031 0.969 11 N -0.817 5.817 12 C -0.138 4.138 13 C -0.065 4.065 14 C -0.109 4.109 15 C -0.102 4.102 16 C -0.107 4.107 17 C -0.090 4.090 18 C -0.111 4.111 19 C 0.099 3.901 20 N -0.495 5.495 21 C 0.199 3.801 22 Cl -0.030 7.030 23 H 0.256 0.744 24 H 0.315 0.685 25 H 0.326 0.674 26 H 0.159 0.841 27 H 0.154 0.846 28 H 0.167 0.833 29 H 0.168 0.832 30 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.211 -14.522 5.094 17.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.159 4.159 3 Si 0.762 3.238 4 H -0.204 1.204 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.567 4.567 8 H 0.056 0.944 9 C 0.157 3.843 10 H 0.048 0.952 11 N -0.345 5.345 12 C -0.144 4.144 13 C -0.091 4.091 14 C -0.111 4.111 15 C -0.121 4.121 16 C -0.125 4.125 17 C -0.109 4.109 18 C -0.129 4.129 19 C -0.022 4.022 20 N -0.206 5.206 21 C 0.020 3.980 22 Cl -0.001 7.001 23 H 0.065 0.935 24 H 0.127 0.873 25 H 0.140 0.860 26 H 0.176 0.824 27 H 0.172 0.828 28 H 0.185 0.815 29 H 0.185 0.815 30 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 8.091 -13.959 3.939 16.608 hybrid contribution 0.317 0.790 0.249 0.887 sum 8.408 -13.169 4.189 16.176 Atomic orbital electron populations 1.70181 1.06684 1.26372 1.47748 1.25473 0.95283 1.01071 0.94067 0.85992 0.78724 0.80567 0.78498 1.20410 1.20835 1.19868 1.20777 0.91418 0.90494 1.54005 0.94428 1.17846 0.87303 0.88237 0.90887 0.95167 1.58933 1.28167 1.43350 1.04054 1.21988 1.00725 0.99489 0.92192 1.21488 0.95988 0.93433 0.98216 1.19149 0.98472 0.97735 0.95756 1.21308 0.98396 0.95533 0.96817 1.21405 0.95293 0.96465 0.99289 1.21339 0.98986 0.99356 0.91228 1.20976 0.96884 0.94079 1.01010 1.19192 0.98510 0.96961 0.87572 1.67290 1.14207 1.07135 1.31998 1.21866 0.94854 0.92651 0.88583 1.98376 1.92127 1.74891 1.34748 0.93492 0.87324 0.85957 0.82409 0.82823 0.81504 0.81491 0.84205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -50.09 12.77 21.45 0.27 -49.81 16 2 C 0.05 2.48 5.39 84.65 0.46 2.94 16 3 Si 0.94 43.73 29.54 68.60 2.03 45.76 16 4 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 5 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 6 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 7 C -0.53 -28.46 8.45 25.60 0.22 -28.24 16 8 H 0.04 2.08 7.74 -2.91 -0.02 2.06 16 9 C 0.27 12.99 2.30 43.43 0.10 13.09 16 10 H 0.03 1.66 7.33 -2.39 -0.02 1.64 16 11 N -0.82 -36.13 8.02 -174.95 -1.40 -37.53 16 12 C -0.14 -5.89 5.00 -19.97 -0.10 -5.99 16 13 C -0.07 -2.30 9.06 22.49 0.20 -2.10 16 14 C -0.11 -3.44 5.74 -21.27 -0.12 -3.56 16 15 C -0.10 -2.25 9.77 22.32 0.22 -2.03 16 16 C -0.11 -1.78 9.96 22.05 0.22 -1.56 16 17 C -0.09 -1.58 9.94 22.04 0.22 -1.36 16 18 C -0.11 -2.83 9.98 22.34 0.22 -2.61 16 19 C 0.10 3.39 6.60 40.29 0.27 3.66 16 20 N -0.49 -19.80 10.31 -179.55 -1.85 -21.65 16 21 C 0.20 8.56 7.25 85.08 0.62 9.18 16 22 Cl -0.03 -1.28 27.38 -2.72 -0.07 -1.35 16 23 H 0.26 14.12 8.31 -92.71 -0.77 13.35 16 24 H 0.31 12.27 9.05 -89.69 -0.81 11.45 16 25 H 0.33 13.29 7.30 -89.70 -0.65 12.64 16 26 H 0.16 4.82 6.29 -2.91 -0.02 4.80 16 27 H 0.15 2.56 8.06 -2.91 -0.02 2.54 16 28 H 0.17 1.43 8.06 -2.91 -0.02 1.41 16 29 H 0.17 1.61 8.06 -2.91 -0.02 1.59 16 30 H 0.14 3.24 8.06 -2.91 -0.02 3.21 16 Total: -1.00 -65.97 277.03 1.22 -64.74 By element: Atomic # 1 Polarization: 18.71 SS G_CDS: -0.27 Total: 18.44 kcal Atomic # 6 Polarization: -21.10 SS G_CDS: 2.52 Total: -18.58 kcal Atomic # 7 Polarization: -106.02 SS G_CDS: -2.98 Total: -109.00 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Atomic # 17 Polarization: -1.28 SS G_CDS: -0.07 Total: -1.35 kcal Total: -65.97 1.22 -64.74 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095684499.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.322 kcal (2) G-P(sol) polarization free energy of solvation -65.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.745 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds