Wall clock time and date at job start Mon Mar 30 2020 06:38:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31164 * 1 3 3 Cl 1.73599 * 119.99815 * 2 1 4 4 C 1.50699 * 119.99993 * 179.97438 * 2 1 3 5 5 N 1.46494 * 109.46986 * 264.99823 * 4 2 1 6 6 C 1.37858 * 126.53450 * 90.02992 * 5 4 2 7 7 C 1.40185 * 125.30580 * 359.95750 * 6 5 4 8 8 H 1.08001 * 119.99607 * 354.66852 * 7 6 5 9 9 C 1.40339 * 119.99999 * 174.66671 * 7 6 5 10 10 N 1.30588 * 120.00198 * 6.07952 * 9 7 6 11 11 Si 1.86803 * 120.00094 * 186.08230 * 9 7 6 12 12 H 1.48494 * 109.47327 * 94.98211 * 11 9 7 13 13 H 1.48499 * 109.46935 * 214.98303 * 11 9 7 14 14 H 1.48500 * 109.47205 * 334.97907 * 11 9 7 15 15 N 1.32468 * 109.38564 * 179.97438 * 6 5 4 16 16 C 1.33970 * 109.78558 * 359.97438 * 15 6 5 17 17 C 1.40542 * 133.19603 * 180.02562 * 16 15 6 18 18 C 1.36358 * 119.84454 * 179.97438 * 17 16 15 19 19 C 1.39037 * 120.76052 * 0.02562 * 18 17 16 20 20 C 1.37965 * 120.57698 * 0.02562 * 19 18 17 21 21 C 1.37960 * 126.53917 * 269.71134 * 5 4 2 22 22 H 1.07994 * 119.99709 * 180.02562 * 1 2 3 23 23 H 1.07999 * 119.99816 * 359.97438 * 1 2 3 24 24 H 1.08994 * 109.46837 * 25.00247 * 4 2 1 25 25 H 1.09004 * 109.46882 * 145.00288 * 4 2 1 26 26 H 0.97000 * 119.99978 * 179.97438 * 10 9 7 27 27 H 1.07994 * 120.07253 * 359.97438 * 17 16 15 28 28 H 1.07995 * 119.61502 * 180.02562 * 18 17 16 29 29 H 1.08004 * 119.70838 * 180.02562 * 19 18 17 30 30 H 1.07998 * 120.11949 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3116 0.0000 0.0000 3 17 2.1796 1.5034 0.0000 4 6 2.0651 -1.3051 0.0006 5 7 2.4136 -1.6671 1.3767 6 6 1.6534 -2.4221 2.2442 7 6 0.4002 -2.9774 1.9503 8 1 -0.0815 -2.7554 1.0095 9 6 -0.2282 -3.8219 2.8784 10 7 0.2957 -3.9963 4.0618 11 14 -1.8143 -4.6965 2.4211 12 1 -1.5019 -6.0607 1.9248 13 1 -2.6889 -4.7931 3.6173 14 1 -2.5129 -3.9308 1.3577 15 7 2.2916 -2.5407 3.3989 16 6 3.4609 -1.8896 3.3398 17 6 4.5037 -1.6990 4.2626 18 6 5.5995 -0.9695 3.9071 19 6 5.6996 -0.4087 2.6388 20 6 4.6900 -0.5795 1.7142 21 6 3.5677 -1.3227 2.0495 22 1 -0.5399 -0.9353 0.0004 23 1 -0.5400 0.9353 0.0004 24 1 1.4402 -2.0855 -0.4334 25 1 2.9759 -1.1990 -0.5889 26 1 -0.1389 -4.5797 4.7034 27 1 4.4371 -2.1294 5.2508 28 1 6.3988 -0.8258 4.6190 29 1 6.5755 0.1656 2.3752 30 1 4.7753 -0.1403 0.7313 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000110858842.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:27 Heat of formation + Delta-G solvation = 60.011712 kcal Electronic energy + Delta-G solvation = -17077.745773 eV Core-core repulsion = 14285.028991 eV Total energy + Delta-G solvation = -2792.716782 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.057 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.14433 -38.13068 -37.58327 -35.75186 -35.15521 -32.97513 -30.82916 -30.38328 -27.70836 -27.19430 -23.15370 -22.51554 -21.63711 -20.80386 -18.78869 -17.91669 -17.59212 -16.87157 -16.53166 -15.80894 -15.63372 -14.87058 -14.63939 -14.52654 -14.41076 -13.34215 -13.30250 -13.18587 -13.00959 -12.85838 -12.52770 -12.35104 -12.15630 -11.94880 -11.87150 -11.84620 -11.08640 -10.78380 -10.21737 -9.76825 -9.00642 -8.62019 -8.47864 -6.52186 0.53703 0.79974 1.05286 1.28853 1.43990 1.47819 1.59599 2.18197 2.37664 2.51650 3.18391 3.61479 3.74682 3.95070 3.99441 4.32739 4.41926 4.48661 4.67176 4.73233 4.91892 4.99747 5.13081 5.20486 5.24515 5.26400 5.59194 5.69874 5.94093 5.99322 6.18131 6.24232 6.55808 6.80848 7.20804 8.10546 8.45043 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.016403 B = 0.009228 C = 0.006198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.566079 B = 3033.375383 C = 4516.490107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.108 4.108 3 Cl -0.093 7.093 4 C 0.165 3.835 5 N -0.533 5.533 6 C 0.396 3.604 7 C -0.461 4.461 8 H 0.109 0.891 9 C 0.031 3.969 10 N -0.769 5.769 11 Si 0.996 3.004 12 H -0.266 1.266 13 H -0.275 1.275 14 H -0.240 1.240 15 N -0.587 5.587 16 C 0.055 3.945 17 C -0.152 4.152 18 C -0.115 4.115 19 C -0.168 4.168 20 C -0.099 4.099 21 C -0.013 4.013 22 H 0.135 0.865 23 H 0.127 0.873 24 H 0.116 0.884 25 H 0.096 0.904 26 H 0.282 0.718 27 H 0.101 0.899 28 H 0.142 0.858 29 H 0.146 0.854 30 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.060 5.124 -8.774 10.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.136 4.136 3 Cl -0.065 7.065 4 C 0.043 3.957 5 N -0.229 5.229 6 C 0.158 3.842 7 C -0.498 4.498 8 H 0.127 0.873 9 C -0.192 4.192 10 N -0.392 5.392 11 Si 0.815 3.185 12 H -0.191 1.191 13 H -0.200 1.200 14 H -0.162 1.162 15 N -0.312 5.312 16 C -0.070 4.070 17 C -0.173 4.173 18 C -0.135 4.135 19 C -0.188 4.188 20 C -0.120 4.120 21 C -0.120 4.120 22 H 0.153 0.847 23 H 0.145 0.855 24 H 0.134 0.866 25 H 0.114 0.886 26 H 0.092 0.908 27 H 0.120 0.880 28 H 0.159 0.841 29 H 0.163 0.837 30 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -0.180 4.750 -7.998 9.304 hybrid contribution -0.230 0.097 -0.341 0.423 sum -0.410 4.847 -8.339 9.654 Atomic orbital electron populations 1.24370 0.93455 1.04939 0.94881 1.23737 0.94719 0.87459 1.07652 1.98340 1.78351 1.32781 1.97072 1.20620 1.00847 0.92826 0.81453 1.45626 1.16175 1.48365 1.12697 1.20823 0.92722 0.87680 0.82988 1.18949 0.99226 1.26735 1.04926 0.87284 1.26970 1.02488 0.96159 0.93549 1.70134 1.37386 1.26533 1.05151 0.84988 0.75642 0.78604 0.79252 1.19087 1.19994 1.16236 1.71258 1.07024 1.30814 1.22136 1.20073 0.95289 0.98029 0.93606 1.20043 0.94215 1.04866 0.98185 1.20629 0.97152 0.98387 0.97375 1.20862 0.99562 1.04745 0.93646 1.19958 0.92087 0.99813 1.00145 1.19163 0.91663 1.06179 0.95005 0.84717 0.85524 0.86610 0.88563 0.90763 0.88037 0.84068 0.83654 0.86280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.80 14.03 67.62 0.95 -2.85 16 2 C -0.11 -3.39 6.08 25.48 0.15 -3.23 16 3 Cl -0.09 -2.84 28.99 -2.72 -0.08 -2.92 16 4 C 0.17 5.66 6.13 85.63 0.52 6.19 16 5 N -0.53 -24.38 2.84 -517.01 -1.47 -25.85 16 6 C 0.40 21.25 7.41 133.69 0.99 22.24 16 7 C -0.46 -22.69 8.96 23.25 0.21 -22.48 16 8 H 0.11 4.58 6.17 -2.91 -0.02 4.56 16 9 C 0.03 1.51 5.49 85.39 0.47 1.98 16 10 N -0.77 -41.79 11.88 21.89 0.26 -41.53 16 11 Si 1.00 35.32 29.57 68.60 2.03 37.35 16 12 H -0.27 -9.25 7.11 99.48 0.71 -8.55 16 13 H -0.27 -9.68 7.11 99.48 0.71 -8.97 16 14 H -0.24 -7.58 7.11 99.48 0.71 -6.88 16 15 N -0.59 -34.96 9.35 -186.51 -1.74 -36.70 16 16 C 0.06 2.98 7.21 40.14 0.29 3.26 16 17 C -0.15 -7.13 10.07 22.39 0.23 -6.91 16 18 C -0.12 -4.36 9.96 22.02 0.22 -4.14 16 19 C -0.17 -5.97 10.04 22.40 0.22 -5.74 16 20 C -0.10 -3.90 10.04 22.32 0.22 -3.67 16 21 C -0.01 -0.60 6.88 39.06 0.27 -0.34 16 22 H 0.14 3.56 6.98 -2.91 -0.02 3.54 16 23 H 0.13 2.99 8.06 -2.91 -0.02 2.97 16 24 H 0.12 3.59 7.23 -2.39 -0.02 3.57 16 25 H 0.10 2.95 8.14 -2.39 -0.02 2.93 16 26 H 0.28 13.91 8.29 -92.71 -0.77 13.14 16 27 H 0.10 4.69 8.06 -2.91 -0.02 4.66 16 28 H 0.14 4.20 8.06 -2.91 -0.02 4.18 16 29 H 0.15 3.97 8.06 -2.91 -0.02 3.94 16 30 H 0.12 4.10 8.06 -2.91 -0.02 4.07 16 Total: -1.00 -67.08 283.33 4.91 -62.17 By element: Atomic # 1 Polarization: 22.02 SS G_CDS: 1.16 Total: 23.17 kcal Atomic # 6 Polarization: -20.44 SS G_CDS: 4.75 Total: -15.69 kcal Atomic # 7 Polarization: -101.13 SS G_CDS: -2.95 Total: -104.09 kcal Atomic # 14 Polarization: 35.32 SS G_CDS: 2.03 Total: 37.35 kcal Atomic # 17 Polarization: -2.84 SS G_CDS: -0.08 Total: -2.92 kcal Total: -67.08 4.91 -62.17 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110858842.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.185 kcal (2) G-P(sol) polarization free energy of solvation -67.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.173 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds