Wall clock time and date at job start Mon Mar 30 2020 06:36:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30334 * 125.96103 * 2 1 4 4 N 1.39875 * 109.24970 * 179.97438 * 3 2 1 5 5 C 1.40080 * 125.68816 * 179.97438 * 4 3 2 6 6 C 1.38875 * 120.05991 * 179.74911 * 5 4 3 7 7 C 1.38099 * 119.94242 * 179.72364 * 6 5 4 8 8 C 1.38403 * 120.05615 * 0.55149 * 7 6 5 9 9 Cl 1.73592 * 119.94206 * 179.74805 * 8 7 6 10 10 C 1.38397 * 120.11239 * 359.72544 * 8 7 6 11 11 C 1.38091 * 120.06224 * 359.97438 * 10 8 7 12 12 C 1.34736 * 108.62900 * 359.97438 * 4 3 2 13 13 C 1.39285 * 107.15613 * 0.02562 * 12 4 3 14 14 C 1.41544 * 126.55598 * 180.02562 * 13 12 4 15 15 H 1.07998 * 120.00260 * 180.02562 * 14 13 12 16 16 C 1.39714 * 119.99760 * 359.97438 * 14 13 12 17 17 N 1.31015 * 119.99950 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 119.99931 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47011 * 359.97438 * 18 16 14 20 20 H 1.48493 * 109.47137 * 120.00054 * 18 16 14 21 21 H 1.48502 * 109.46750 * 239.99764 * 18 16 14 22 22 H 1.09003 * 109.46983 * 90.02773 * 1 2 3 23 23 H 1.08999 * 109.47520 * 210.02817 * 1 2 3 24 24 H 1.09006 * 109.47235 * 330.03363 * 1 2 3 25 25 H 1.07997 * 120.02906 * 359.97438 * 6 5 4 26 26 H 1.08000 * 119.96935 * 180.25521 * 7 6 5 27 27 H 1.08005 * 119.96979 * 179.97438 * 10 8 7 28 28 H 1.08001 * 120.03095 * 180.02562 * 11 10 8 29 29 H 1.07997 * 126.42038 * 179.97438 * 12 4 3 30 30 H 0.97003 * 120.00108 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2724 1.0549 0.0000 4 7 3.6120 0.6527 0.0006 5 6 4.7219 1.5074 0.0003 6 6 6.0064 0.9796 0.0062 7 6 7.0988 1.8244 0.0001 8 6 6.9143 3.1961 -0.0004 9 17 8.2896 4.2553 -0.0015 10 6 5.6353 3.7246 -0.0005 11 6 4.5395 2.8843 -0.0007 12 6 3.6571 -0.6939 0.0015 13 6 2.3407 -1.1490 0.0009 14 6 1.9155 -2.4991 0.0021 15 1 0.8612 -2.7332 0.0010 16 6 2.8598 -3.5288 0.0034 17 7 4.1388 -3.2448 0.0032 18 14 2.2987 -5.3106 0.0042 19 1 0.8146 -5.3621 0.0038 20 1 2.8186 -5.9938 -1.2074 21 1 2.8169 -5.9921 1.2176 22 1 -0.3633 -0.0005 -1.0277 23 1 -0.3634 -0.8897 0.5143 24 1 -0.3634 0.8903 0.5133 25 1 6.1509 -0.0907 0.0115 26 1 8.0979 1.4144 0.0005 27 1 5.4940 4.7954 -0.0005 28 1 3.5416 3.2973 -0.0012 29 1 4.5471 -1.3056 0.0018 30 1 4.7944 -3.9597 0.0045 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000144066480.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:15 Heat of formation + Delta-G solvation = 67.730921 kcal Electronic energy + Delta-G solvation = -16431.094356 eV Core-core repulsion = 13638.712305 eV Total energy + Delta-G solvation = -2792.382052 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.057 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.81163 -39.91276 -37.42544 -35.58298 -34.47705 -32.23000 -31.13080 -30.72804 -28.24490 -26.88090 -23.94588 -23.38476 -21.48607 -20.19389 -19.27829 -18.27452 -17.46121 -16.37761 -16.06652 -15.94327 -15.59748 -14.68852 -14.52116 -14.47551 -14.44038 -13.82873 -13.64819 -13.39673 -13.08339 -12.96654 -12.77335 -12.44444 -12.39637 -12.16644 -11.77506 -11.75877 -11.29798 -10.97971 -10.55553 -10.13647 -9.42278 -8.81752 -8.44849 -6.11852 -0.13293 0.23957 1.15343 1.37444 1.45184 1.49902 1.59138 1.91118 2.20511 2.32110 2.72343 3.45012 3.67414 3.86055 4.03582 4.19702 4.37454 4.45134 4.54644 4.85995 4.90274 4.91422 4.99582 5.07766 5.18989 5.21227 5.36101 5.58105 5.66242 5.75682 5.88620 6.39009 6.81216 6.98092 7.03831 7.28936 8.56480 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.028642 B = 0.004923 C = 0.004211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.366961 B = 5685.762737 C = 6647.985018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 C 0.030 3.970 3 N -0.336 5.336 4 N -0.345 5.345 5 C 0.175 3.825 6 C -0.157 4.157 7 C -0.068 4.068 8 C -0.073 4.073 9 Cl -0.062 7.062 10 C -0.070 4.070 11 C -0.145 4.145 12 C -0.099 4.099 13 C -0.064 4.064 14 C -0.447 4.447 15 H 0.083 0.917 16 C 0.011 3.989 17 N -0.861 5.861 18 Si 0.990 3.010 19 H -0.256 1.256 20 H -0.274 1.274 21 H -0.274 1.274 22 H 0.080 0.920 23 H 0.079 0.921 24 H 0.077 0.923 25 H 0.129 0.871 26 H 0.160 0.840 27 H 0.163 0.837 28 H 0.135 0.865 29 H 0.188 0.812 30 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.032 7.881 -0.012 8.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.138 4.138 3 N -0.156 5.156 4 N -0.123 5.123 5 C 0.078 3.922 6 C -0.179 4.179 7 C -0.087 4.087 8 C -0.101 4.101 9 Cl -0.033 7.033 10 C -0.089 4.089 11 C -0.166 4.166 12 C -0.236 4.236 13 C -0.073 4.073 14 C -0.480 4.480 15 H 0.101 0.899 16 C -0.196 4.196 17 N -0.492 5.492 18 Si 0.813 3.187 19 H -0.179 1.179 20 H -0.199 1.199 21 H -0.199 1.199 22 H 0.099 0.901 23 H 0.098 0.902 24 H 0.096 0.904 25 H 0.146 0.854 26 H 0.178 0.822 27 H 0.181 0.819 28 H 0.153 0.847 29 H 0.205 0.795 30 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 4.367 9.034 -0.011 10.034 hybrid contribution 0.103 -1.768 -0.009 1.771 sum 4.469 7.266 -0.020 8.531 Atomic orbital electron populations 1.20065 0.84716 1.03157 1.03037 1.23360 0.98083 0.90874 1.01528 1.76326 0.87156 1.24657 1.27479 1.45258 1.03024 1.05019 1.58993 1.18135 0.85113 0.90436 0.98514 1.20854 0.90006 1.00997 1.06072 1.20976 0.99351 0.90895 0.97478 1.20817 0.88746 0.91074 1.09415 1.98341 1.42440 1.65336 1.97168 1.21046 0.89206 1.01165 0.97515 1.20805 1.00412 0.90291 1.05072 1.23842 1.01454 0.81300 1.16985 1.18579 0.90505 0.94231 1.03968 1.19204 0.94652 0.89303 1.44853 0.89874 1.26540 0.94396 1.05366 0.93288 1.69518 1.02418 1.35335 1.41976 0.84991 0.79508 0.76091 0.78120 1.17937 1.19910 1.19910 0.90138 0.90227 0.90438 0.85353 0.82217 0.81949 0.84724 0.79546 0.90948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.85 10.24 71.24 0.73 -1.12 16 2 C 0.03 1.46 7.28 43.70 0.32 1.78 16 3 N -0.34 -16.37 11.73 -46.30 -0.54 -16.91 16 4 N -0.34 -16.94 3.77 -185.12 -0.70 -17.64 16 5 C 0.17 7.21 6.68 38.13 0.25 7.46 16 6 C -0.16 -5.73 9.44 22.39 0.21 -5.52 16 7 C -0.07 -1.95 9.82 22.28 0.22 -1.73 16 8 C -0.07 -1.95 6.32 22.35 0.14 -1.81 16 9 Cl -0.06 -1.37 28.95 -2.72 -0.08 -1.45 16 10 C -0.07 -1.93 9.82 22.27 0.22 -1.71 16 11 C -0.14 -5.03 9.65 22.39 0.22 -4.81 16 12 C -0.10 -5.30 9.76 84.50 0.82 -4.48 16 13 C -0.06 -3.48 5.94 -21.29 -0.13 -3.61 16 14 C -0.45 -23.62 9.15 23.44 0.21 -23.40 16 15 H 0.08 4.09 7.37 -2.91 -0.02 4.07 16 16 C 0.01 0.58 5.49 85.17 0.47 1.05 16 17 N -0.86 -44.92 10.33 21.79 0.23 -44.69 16 18 Si 0.99 38.69 29.56 68.60 2.03 40.72 16 19 H -0.26 -9.54 7.11 99.48 0.71 -8.84 16 20 H -0.27 -10.45 7.11 99.48 0.71 -9.74 16 21 H -0.27 -10.44 7.11 99.48 0.71 -9.74 16 22 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 23 H 0.08 2.75 7.61 -2.39 -0.02 2.73 16 24 H 0.08 2.44 8.14 -2.38 -0.02 2.42 16 25 H 0.13 4.93 6.71 -2.91 -0.02 4.92 16 26 H 0.16 3.66 8.06 -2.91 -0.02 3.64 16 27 H 0.16 3.40 8.06 -2.91 -0.02 3.38 16 28 H 0.13 4.73 7.68 -2.91 -0.02 4.71 16 29 H 0.19 10.28 4.70 -2.91 -0.01 10.26 16 30 H 0.28 13.34 8.30 -92.71 -0.77 12.57 16 Total: -1.00 -60.68 280.03 5.79 -54.89 By element: Atomic # 1 Polarization: 21.82 SS G_CDS: 1.17 Total: 22.99 kcal Atomic # 6 Polarization: -41.59 SS G_CDS: 3.69 Total: -37.90 kcal Atomic # 7 Polarization: -78.23 SS G_CDS: -1.02 Total: -79.25 kcal Atomic # 14 Polarization: 38.69 SS G_CDS: 2.03 Total: 40.72 kcal Atomic # 17 Polarization: -1.37 SS G_CDS: -0.08 Total: -1.45 kcal Total: -60.68 5.79 -54.89 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000144066480.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.617 kcal (2) G-P(sol) polarization free energy of solvation -60.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.886 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds