Wall clock time and date at job start Mon Mar 30 2020 06:41:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00060 * 2 1 4 4 H 1.48497 * 109.47321 * 269.99636 * 3 2 1 5 5 H 1.48499 * 109.47445 * 30.00066 * 3 2 1 6 6 H 1.48504 * 109.46895 * 150.00173 * 3 2 1 7 7 C 1.37875 * 119.99704 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00306 * 173.68989 * 7 2 1 9 9 C 1.50702 * 120.00285 * 353.68921 * 7 2 1 10 10 C 1.53000 * 115.54948 * 85.65899 * 9 7 2 11 11 S 1.80997 * 109.47039 * 65.33692 * 10 9 7 12 12 C 1.76197 * 99.99826 * 179.97438 * 11 10 9 13 13 C 1.39409 * 119.91156 * 179.97438 * 12 11 10 14 14 C 1.36487 * 120.09385 * 179.97438 * 13 12 11 15 15 C 1.40162 * 119.90956 * 0.02562 * 14 13 12 16 16 C 1.46695 * 120.09152 * 179.97438 * 15 14 13 17 17 O 1.21319 * 119.99831 * 179.97438 * 16 15 14 18 18 C 1.40158 * 119.81878 * 0.25067 * 15 14 13 19 19 C 1.36501 * 119.90625 * 359.48856 * 18 15 14 20 20 C 1.53003 * 117.50104 * 231.33474 * 9 7 2 21 21 C 1.53007 * 117.49536 * 299.99332 * 9 7 2 22 22 H 0.97006 * 119.99443 * 355.02417 * 1 2 3 23 23 H 1.08996 * 109.46945 * 305.33407 * 10 9 7 24 24 H 1.09003 * 109.46495 * 185.34013 * 10 9 7 25 25 H 1.07997 * 119.94701 * 359.95942 * 13 12 11 26 26 H 1.08005 * 120.04673 * 179.97438 * 14 13 12 27 27 H 1.08002 * 119.99948 * 0.02562 * 16 15 14 28 28 H 1.07999 * 120.04626 * 179.74583 * 18 15 14 29 29 H 1.07998 * 119.95082 * 180.25245 * 19 18 15 30 30 H 1.08998 * 117.49730 * 215.00003 * 20 9 7 31 31 H 1.09002 * 117.49572 * 0.02562 * 20 9 7 32 32 H 1.09004 * 117.49892 * 359.97240 * 21 9 7 33 33 H 1.09001 * 117.49765 * 144.97112 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0796 -1.1970 -0.1033 9 6 1.2578 -2.4953 0.1423 10 6 0.7096 -3.0877 -1.1575 11 16 2.0865 -3.5535 -2.2360 12 6 1.1931 -4.1876 -3.6160 13 6 1.8821 -4.6765 -4.7250 14 6 1.1938 -5.1690 -5.7957 15 6 -0.2077 -5.1825 -5.7795 16 6 -0.9514 -5.7105 -6.9284 17 8 -2.1645 -5.7218 -6.9124 18 6 -0.8966 -4.6848 -4.6650 19 6 -0.2007 -4.1988 -3.5960 20 6 1.7407 -3.4728 1.2158 21 6 0.4339 -2.7009 1.4151 22 1 -0.4849 0.8370 0.0729 23 1 0.0883 -2.3469 -1.6607 24 1 0.1111 -3.9700 -0.9305 25 1 2.9619 -4.6651 -4.7369 26 1 1.7283 -5.5472 -6.6547 27 1 -0.4191 -6.0899 -7.7882 28 1 -1.9765 -4.6896 -4.6504 29 1 -0.7308 -3.8189 -2.7352 30 1 1.6679 -4.5379 0.9960 31 1 2.5982 -3.1745 1.8190 32 1 0.4324 -1.8952 2.1493 33 1 -0.4988 -3.2579 1.3264 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000168252908.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:17 Heat of formation + Delta-G solvation = 9.831850 kcal Electronic energy + Delta-G solvation = -16389.911896 eV Core-core repulsion = 13700.603202 eV Total energy + Delta-G solvation = -2689.308694 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.64282 -37.93781 -36.73967 -32.05706 -31.54575 -31.02224 -27.91585 -25.54319 -24.83636 -22.48269 -21.24384 -20.98214 -19.43282 -17.57147 -16.64356 -16.20584 -15.77707 -14.74164 -14.40922 -14.27838 -14.22033 -14.06691 -13.91948 -13.50764 -13.13761 -12.75523 -12.14295 -11.99926 -11.47444 -11.13617 -11.02957 -10.97546 -10.56340 -10.32019 -9.92303 -9.78523 -9.67449 -9.48968 -9.04744 -8.93714 -8.55033 -8.18514 -6.92573 -6.15782 -4.22864 0.61405 1.52133 2.10621 2.43422 3.04310 3.24393 3.32001 3.35219 3.85769 4.26944 4.33250 4.79205 4.97539 5.12857 5.22873 5.28624 5.40266 5.59299 5.71222 5.76406 6.01538 6.05598 6.23213 6.27403 6.35483 6.39173 6.46085 6.58043 6.65755 6.90216 6.95074 7.23736 7.36347 7.41893 7.77405 8.24825 8.79726 9.45027 10.93113 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.025190 B = 0.004871 C = 0.004715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.306720 B = 5746.967009 C = 5937.545410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.074 3.926 3 Si 0.889 3.111 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.493 4.493 8 H 0.063 0.937 9 C 0.049 3.951 10 C -0.059 4.059 11 S -0.065 6.065 12 C -0.047 4.047 13 C -0.132 4.132 14 C -0.048 4.048 15 C -0.227 4.227 16 C 0.386 3.614 17 O -0.474 6.474 18 C -0.032 4.032 19 C -0.158 4.158 20 C -0.206 4.206 21 C -0.144 4.144 22 H 0.262 0.738 23 H 0.096 0.904 24 H 0.060 0.940 25 H 0.130 0.870 26 H 0.130 0.870 27 H 0.099 0.901 28 H 0.130 0.870 29 H 0.135 0.865 30 H 0.068 0.932 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.848 -9.336 -8.581 12.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.130 4.130 3 Si 0.716 3.284 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.531 4.531 8 H 0.081 0.919 9 C 0.047 3.953 10 C -0.208 4.208 11 S 0.188 5.812 12 C -0.162 4.162 13 C -0.157 4.157 14 C -0.068 4.068 15 C -0.232 4.232 16 C 0.246 3.754 17 O -0.349 6.349 18 C -0.053 4.053 19 C -0.183 4.183 20 C -0.243 4.243 21 C -0.184 4.184 22 H 0.072 0.928 23 H 0.114 0.886 24 H 0.079 0.921 25 H 0.148 0.852 26 H 0.148 0.852 27 H 0.115 0.885 28 H 0.148 0.852 29 H 0.152 0.848 30 H 0.087 0.913 31 H 0.100 0.900 32 H 0.104 0.896 33 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 2.341 -9.013 -8.264 12.451 hybrid contribution -0.895 0.919 -0.105 1.287 sum 1.447 -8.094 -8.369 11.733 Atomic orbital electron populations 1.69997 1.05923 1.27099 1.48454 1.24954 0.94797 0.99013 0.94190 0.86642 0.80053 0.83327 0.78339 1.20456 1.21142 1.19726 1.20376 0.92945 0.88417 1.51348 0.91862 1.18485 0.98610 0.94115 0.84099 1.23576 0.96196 1.01508 0.99489 1.85883 1.14545 1.70574 1.10202 1.22828 0.96890 0.97150 0.99299 1.20498 1.00001 1.02188 0.93004 1.20965 0.92757 0.95535 0.97550 1.20769 0.94663 1.09266 0.98541 1.23854 0.89010 0.73781 0.88763 1.90520 1.17540 1.45243 1.81576 1.21045 1.00204 0.92540 0.91494 1.21123 0.92933 1.03744 1.00502 1.23066 0.98694 0.95739 1.06818 1.22580 0.92223 1.01145 1.02476 0.92848 0.88568 0.92129 0.85208 0.85180 0.88518 0.85221 0.84769 0.91349 0.90029 0.89607 0.91718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.75 12.90 55.43 0.71 -23.04 16 2 C 0.07 1.94 5.39 -17.82 -0.10 1.85 16 3 Si 0.89 20.51 29.55 -169.99 -5.02 15.49 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 7 C -0.49 -12.73 8.49 -34.44 -0.29 -13.02 16 8 H 0.06 1.66 7.82 -52.49 -0.41 1.25 16 9 C 0.05 1.12 1.34 -155.65 -0.21 0.92 16 10 C -0.06 -1.24 4.02 37.16 0.15 -1.09 16 11 S -0.07 -1.23 21.76 -107.50 -2.34 -3.56 16 12 C -0.05 -0.76 6.13 -38.71 -0.24 -1.00 16 13 C -0.13 -1.79 9.73 -39.78 -0.39 -2.18 16 14 C -0.05 -0.53 9.74 -39.49 -0.38 -0.92 16 15 C -0.23 -2.87 5.87 -105.04 -0.62 -3.48 16 16 C 0.39 4.28 11.43 34.15 0.39 4.67 16 17 O -0.47 -7.07 17.15 5.52 0.09 -6.97 16 18 C -0.03 -0.47 9.54 -39.49 -0.38 -0.85 16 19 C -0.16 -2.54 9.12 -39.77 -0.36 -2.90 16 20 C -0.21 -4.24 9.96 -26.69 -0.27 -4.50 16 21 C -0.14 -3.18 9.40 -26.69 -0.25 -3.43 16 22 H 0.26 6.83 8.32 -40.82 -0.34 6.49 16 23 H 0.10 2.20 7.53 -51.92 -0.39 1.81 16 24 H 0.06 1.15 7.47 -51.91 -0.39 0.76 16 25 H 0.13 1.55 8.06 -52.49 -0.42 1.12 16 26 H 0.13 0.95 8.06 -52.48 -0.42 0.53 16 27 H 0.10 0.65 8.06 -52.49 -0.42 0.23 16 28 H 0.13 1.82 7.64 -52.49 -0.40 1.42 16 29 H 0.13 2.22 5.46 -52.49 -0.29 1.93 16 30 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 31 H 0.08 1.68 8.14 -51.93 -0.42 1.25 16 32 H 0.09 2.02 8.14 -51.93 -0.42 1.60 16 33 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 LS Contribution 303.81 15.07 4.58 4.58 Total: -1.00 -28.45 303.81 -8.88 -37.34 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: -3.97 Total: 2.11 kcal Atomic # 6 Polarization: -23.01 SS G_CDS: -2.94 Total: -25.94 kcal Atomic # 7 Polarization: -23.75 SS G_CDS: 0.71 Total: -23.04 kcal Atomic # 8 Polarization: -7.07 SS G_CDS: 0.09 Total: -6.97 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Atomic # 16 Polarization: -1.23 SS G_CDS: -2.34 Total: -3.56 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -28.45 -8.88 -37.34 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000168252908.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.170 kcal (2) G-P(sol) polarization free energy of solvation -28.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.339 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds