Wall clock time and date at job start Mon Mar 30 2020 06:27:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35973 * 116.99835 * 2 1 4 4 C 1.37828 * 120.01758 * 359.97438 * 3 2 1 5 5 C 1.40786 * 119.63923 * 179.97438 * 4 3 2 6 6 C 1.41201 * 120.15657 * 180.02562 * 5 4 3 7 7 H 1.07994 * 120.00264 * 154.62898 * 6 5 4 8 8 C 1.39879 * 120.00018 * 334.63556 * 6 5 4 9 9 N 1.30886 * 119.99855 * 342.92062 * 8 6 5 10 10 Si 1.86797 * 120.00159 * 162.91952 * 8 6 5 11 11 H 1.48508 * 109.47046 * 59.99917 * 10 8 6 12 12 H 1.48494 * 109.47129 * 179.97438 * 10 8 6 13 13 H 1.48495 * 109.47240 * 299.99944 * 10 8 6 14 14 C 1.40844 * 119.69039 * 0.02562 * 5 4 3 15 15 C 1.36467 * 120.02707 * 359.97438 * 14 5 4 16 16 C 1.50701 * 119.81733 * 179.97438 * 15 14 5 17 17 F 1.39894 * 109.47206 * 359.97438 * 16 15 14 18 18 F 1.39908 * 109.46751 * 239.99845 * 16 15 14 19 19 F 1.39896 * 109.47349 * 120.00032 * 16 15 14 20 20 C 1.39150 * 120.36036 * 0.25284 * 15 14 5 21 21 O 1.35742 * 119.84081 * 179.74725 * 20 15 14 22 22 H 1.09005 * 109.47278 * 60.00085 * 1 2 3 23 23 H 1.09002 * 109.47255 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47443 * 299.99820 * 1 2 3 25 25 H 1.07999 * 120.17590 * 0.02562 * 4 3 2 26 26 H 0.96998 * 120.00597 * 180.02562 * 9 8 6 27 27 H 1.07997 * 119.99122 * 179.97438 * 14 5 4 28 28 H 0.96693 * 114.00301 * 89.99992 * 21 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 1.2959 2.3677 -0.0005 5 6 1.9433 3.6179 0.0000 6 6 1.1854 4.8092 0.0000 7 1 1.6083 5.7183 0.4011 8 6 -0.1134 4.8118 -0.5194 9 7 -0.5098 3.8352 -1.2954 10 14 -1.2821 6.2090 -0.1055 11 1 -0.7046 7.4935 -0.5768 12 1 -2.5869 5.9779 -0.7757 13 1 -1.4836 6.2667 1.3646 14 6 3.3506 3.6747 0.0006 15 6 4.0807 2.5217 0.0011 16 6 5.5862 2.5881 0.0011 17 9 5.9940 3.9263 -0.0001 18 9 6.0811 1.9492 -1.1410 19 9 6.0811 1.9503 1.1436 20 6 3.4425 1.2852 -0.0042 21 8 4.1790 0.1450 -0.0088 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 0.2172 2.3148 -0.0005 26 1 -1.4103 3.8371 -1.6560 27 1 3.8523 4.6311 0.0006 28 1 4.3923 -0.1891 0.8731 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000196177390.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:08 Heat of formation + Delta-G solvation = -236.067317 kcal Electronic energy + Delta-G solvation = -20113.751376 eV Core-core repulsion = 16293.336988 eV Total energy + Delta-G solvation = -3820.414388 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.060 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -51.08296 -48.60960 -48.52571 -40.95354 -38.60334 -37.63814 -35.35308 -32.00514 -30.95659 -28.38961 -27.14225 -26.23587 -22.95256 -22.56335 -20.20318 -19.48904 -19.39325 -19.05230 -18.17825 -17.53092 -16.92640 -16.66817 -16.58859 -15.94017 -15.42924 -15.32748 -15.00172 -14.88220 -14.81856 -14.72788 -14.67287 -13.95625 -13.66549 -13.39940 -13.15491 -12.79290 -12.63367 -12.37126 -12.21055 -11.83948 -11.75187 -11.33911 -11.03523 -9.65330 -9.04135 -8.73949 -6.50722 0.39376 0.74215 1.40766 1.47925 1.53223 1.73777 2.17208 2.41841 2.50196 2.95466 3.26282 3.28829 3.52915 3.66878 4.38084 4.43674 4.55573 4.64016 4.80756 4.84204 4.97564 5.14527 5.29509 5.52602 5.78837 5.88334 6.26842 6.52844 6.65877 6.73253 7.09801 8.18386 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.020853 B = 0.007953 C = 0.006075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.400852 B = 3519.900857 C = 4608.199757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.330 6.330 3 C 0.115 3.885 4 C -0.239 4.239 5 C 0.103 3.897 6 C -0.476 4.476 7 H 0.090 0.910 8 C 0.039 3.961 9 N -0.810 5.810 10 Si 0.987 3.013 11 H -0.259 1.259 12 H -0.267 1.267 13 H -0.257 1.257 14 C -0.203 4.203 15 C -0.145 4.145 16 C 0.522 3.478 17 F -0.179 7.179 18 F -0.181 7.181 19 F -0.178 7.178 20 C -0.029 4.029 21 O -0.488 6.488 22 H 0.045 0.955 23 H 0.126 0.874 24 H 0.051 0.949 25 H 0.136 0.864 26 H 0.295 0.705 27 H 0.123 0.877 28 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.488 -1.702 3.432 3.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.244 6.244 3 C 0.069 3.931 4 C -0.259 4.259 5 C 0.100 3.900 6 C -0.503 4.503 7 H 0.109 0.891 8 C -0.178 4.178 9 N -0.435 5.435 10 Si 0.807 3.193 11 H -0.183 1.183 12 H -0.191 1.191 13 H -0.182 1.182 14 C -0.223 4.223 15 C -0.147 4.147 16 C 0.468 3.532 17 F -0.160 7.160 18 F -0.162 7.162 19 F -0.159 7.159 20 C -0.075 4.075 21 O -0.297 6.297 22 H 0.064 0.936 23 H 0.144 0.856 24 H 0.069 0.931 25 H 0.154 0.846 26 H 0.106 0.894 27 H 0.141 0.859 28 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 0.383 -1.928 2.652 3.301 hybrid contribution -0.371 0.574 0.436 0.811 sum 0.011 -1.354 3.088 3.372 Atomic orbital electron populations 1.23129 0.77507 1.04557 1.01246 1.85955 1.22490 1.26751 1.89201 1.19223 0.91109 0.84939 0.97811 1.21528 1.00421 0.90849 1.13104 1.17651 0.90825 0.93671 0.87848 1.19884 0.98798 0.96476 1.35176 0.89147 1.26830 0.99643 0.99887 0.91484 1.69844 1.20098 1.32468 1.21055 0.85153 0.76566 0.77699 0.79846 1.18330 1.19097 1.18159 1.20679 0.94250 0.96041 1.11327 1.19536 0.90107 0.95110 1.09974 1.18065 0.88615 0.72963 0.73529 1.93116 1.91936 1.34724 1.96269 1.93170 1.89453 1.82143 1.51429 1.93136 1.89507 1.82159 1.51107 1.16798 0.86408 0.84637 1.19702 1.84830 1.72190 1.39297 1.33379 0.93592 0.85635 0.93063 0.84635 0.89386 0.85903 0.76747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.00 9.81 113.37 1.11 2.12 15 2 O -0.33 -13.89 10.28 -79.34 -0.82 -14.71 15 3 C 0.11 5.40 6.70 22.55 0.15 5.55 15 4 C -0.24 -11.74 7.66 22.80 0.17 -11.56 15 5 C 0.10 5.20 5.57 -21.29 -0.12 5.08 15 6 C -0.48 -23.24 9.04 23.40 0.21 -23.03 15 7 H 0.09 4.18 7.90 -2.91 -0.02 4.16 15 8 C 0.04 1.77 5.14 85.23 0.44 2.21 15 9 N -0.81 -38.05 10.96 21.82 0.24 -37.81 15 10 Si 0.99 34.03 29.59 68.60 2.03 36.06 15 11 H -0.26 -8.76 7.11 99.48 0.71 -8.05 15 12 H -0.27 -8.70 7.11 99.48 0.71 -8.00 15 13 H -0.26 -8.68 7.11 99.48 0.71 -7.97 15 14 C -0.20 -9.63 9.12 22.49 0.21 -9.42 15 15 C -0.15 -6.55 5.34 -20.06 -0.11 -6.65 15 16 C 0.52 20.75 2.98 71.24 0.21 20.96 15 17 F -0.18 -6.79 15.93 44.97 0.72 -6.08 15 18 F -0.18 -7.30 16.92 44.97 0.76 -6.54 15 19 F -0.18 -6.47 16.95 44.97 0.76 -5.71 15 20 C -0.03 -1.34 6.62 22.87 0.15 -1.19 15 21 O -0.49 -20.12 12.13 -76.76 -0.93 -21.05 15 22 H 0.05 1.63 7.66 -2.38 -0.02 1.61 15 23 H 0.13 3.08 8.14 -2.39 -0.02 3.06 15 24 H 0.05 1.65 7.66 -2.39 -0.02 1.63 15 25 H 0.14 6.60 4.42 -2.91 -0.01 6.58 15 26 H 0.30 12.40 8.30 -92.71 -0.77 11.63 15 27 H 0.12 5.46 7.10 -2.91 -0.02 5.44 15 28 H 0.38 12.26 9.06 -74.06 -0.67 11.59 15 Total: -1.00 -55.86 262.31 5.76 -50.10 By element: Atomic # 1 Polarization: 21.12 SS G_CDS: 0.57 Total: 21.69 kcal Atomic # 6 Polarization: -18.38 SS G_CDS: 2.43 Total: -15.95 kcal Atomic # 7 Polarization: -38.05 SS G_CDS: 0.24 Total: -37.81 kcal Atomic # 8 Polarization: -34.01 SS G_CDS: -1.75 Total: -35.76 kcal Atomic # 9 Polarization: -20.57 SS G_CDS: 2.24 Total: -18.33 kcal Atomic # 14 Polarization: 34.03 SS G_CDS: 2.03 Total: 36.06 kcal Total: -55.86 5.76 -50.10 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000196177390.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -185.965 kcal (2) G-P(sol) polarization free energy of solvation -55.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -241.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -236.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds