Wall clock time and date at job start Mon Mar 30 2020 06:30:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30588 * 1 3 3 Si 1.86801 * 120.00019 * 2 1 4 4 H 1.48509 * 109.46679 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47343 * 299.99925 * 3 2 1 6 6 H 1.48502 * 109.46843 * 60.00328 * 3 2 1 7 7 C 1.40344 * 119.99810 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00296 * 179.97438 * 7 2 1 9 9 C 1.40193 * 120.00030 * 0.02562 * 7 2 1 10 10 N 1.32465 * 125.30372 * 0.02562 * 9 7 2 11 11 C 1.33972 * 109.78122 * 179.97438 * 10 9 7 12 12 C 1.40541 * 133.19612 * 179.97438 * 11 10 9 13 13 C 1.36354 * 119.84451 * 180.02562 * 12 11 10 14 14 C 1.39041 * 120.76433 * 359.97438 * 13 12 11 15 15 C 1.37958 * 120.57170 * 359.97438 * 14 13 12 16 16 C 1.38725 * 119.76404 * 0.02562 * 15 14 13 17 17 N 1.37854 * 125.30704 * 180.24329 * 9 7 2 18 18 C 1.46504 * 126.53507 * 0.11333 * 17 9 7 19 19 C 1.50698 * 109.47136 * 270.06345 * 18 17 9 20 20 C 1.31155 * 119.99883 * 124.99896 * 19 18 17 21 21 Cl 1.73598 * 120.00072 * 0.02562 * 20 19 18 22 22 H 0.97008 * 119.99743 * 0.02562 * 1 2 3 23 23 H 1.07992 * 120.07670 * 0.02562 * 12 11 10 24 24 H 1.08007 * 119.61622 * 180.02562 * 13 12 11 25 25 H 1.08000 * 119.71389 * 179.97438 * 14 13 12 26 26 H 1.07994 * 120.12069 * 180.02562 * 15 14 13 27 27 H 1.08994 * 109.47143 * 30.06576 * 18 17 9 28 28 H 1.08999 * 109.46888 * 150.06774 * 18 17 9 29 29 H 1.08003 * 119.99974 * 305.00333 * 19 18 17 30 30 H 1.08006 * 119.99826 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3059 0.0000 0.0000 3 14 2.2399 1.6177 0.0000 4 1 3.7000 1.3463 -0.0006 5 1 1.8812 2.3965 -1.2125 6 1 1.8812 2.3964 1.2126 7 6 2.0076 -1.2154 -0.0005 8 1 3.0876 -1.2155 -0.0010 9 6 1.3066 -2.4295 -0.0016 10 7 -0.0124 -2.5519 -0.0027 11 6 -0.3474 -3.8491 -0.0041 12 6 -1.5799 -4.5244 -0.0052 13 6 -1.6068 -5.8877 -0.0060 14 6 -0.4262 -6.6222 -0.0064 15 6 0.7971 -5.9844 -0.0064 16 6 0.8510 -4.5982 -0.0056 17 7 1.8824 -3.6820 0.0025 18 6 3.3162 -3.9827 0.0111 19 6 3.8165 -4.0852 -1.4067 20 6 4.8250 -3.3453 -1.8013 21 17 5.5839 -2.2484 -0.6902 22 1 -0.4850 0.8401 -0.0004 23 1 -2.5036 -3.9648 -0.0053 24 1 -2.5560 -6.4028 -0.0072 25 1 -0.4673 -7.7015 -0.0066 26 1 1.7095 -6.5622 -0.0071 27 1 3.8513 -3.1866 0.5286 28 1 3.4860 -4.9286 0.5255 29 1 3.3446 -4.7678 -2.0979 30 1 5.1833 -3.4184 -2.8176 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000211422541.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:45 Heat of formation + Delta-G solvation = 76.460590 kcal Electronic energy + Delta-G solvation = -16967.958199 eV Core-core repulsion = 14175.954695 eV Total energy + Delta-G solvation = -2792.003505 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.057 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.39158 -36.79706 -36.06453 -34.38565 -33.39569 -31.42136 -29.20074 -28.59772 -25.87700 -25.53060 -21.39308 -20.79735 -20.08213 -19.37856 -17.08851 -16.34024 -16.03180 -15.27007 -14.83073 -14.63632 -14.00848 -13.41988 -13.04064 -12.88958 -12.67986 -12.26269 -11.81194 -11.68114 -11.49793 -11.40086 -10.99011 -10.69420 -10.54624 -10.29198 -10.28968 -10.25445 -9.36925 -9.03175 -8.94115 -7.90161 -7.24977 -6.87796 -6.67472 -4.61134 2.00920 2.24639 2.52511 2.70963 2.99047 3.03890 3.08570 3.81251 4.11867 4.12673 4.85928 5.06390 5.33962 5.53691 5.55531 5.65081 5.84899 5.98779 6.03693 6.26445 6.34667 6.44493 6.55096 6.71803 6.85013 7.02018 7.24641 7.47992 7.60706 7.73387 7.89904 8.01390 8.32645 8.64393 9.01044 9.94854 10.21614 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.015730 B = 0.009279 C = 0.006003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1779.592527 B = 3016.968667 C = 4662.966960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.715 5.715 2 C 0.078 3.922 3 Si 0.911 3.089 4 H -0.257 1.257 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.435 4.435 8 H 0.094 0.906 9 C 0.421 3.579 10 N -0.537 5.537 11 C 0.112 3.888 12 C -0.131 4.131 13 C -0.122 4.122 14 C -0.184 4.184 15 C -0.103 4.103 16 C -0.008 4.008 17 N -0.535 5.535 18 C 0.148 3.852 19 C -0.148 4.148 20 C -0.101 4.101 21 Cl -0.090 7.090 22 H 0.278 0.722 23 H 0.107 0.893 24 H 0.103 0.897 25 H 0.103 0.897 26 H 0.095 0.905 27 H 0.100 0.900 28 H 0.080 0.920 29 H 0.132 0.868 30 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.469 -4.654 -1.902 9.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.337 5.337 2 C -0.150 4.150 3 Si 0.734 3.266 4 H -0.181 1.181 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.472 4.472 8 H 0.112 0.888 9 C 0.185 3.815 10 N -0.260 5.260 11 C -0.016 4.016 12 C -0.152 4.152 13 C -0.143 4.143 14 C -0.205 4.205 15 C -0.125 4.125 16 C -0.115 4.115 17 N -0.232 5.232 18 C 0.024 3.976 19 C -0.168 4.168 20 C -0.146 4.146 21 Cl -0.062 7.062 22 H 0.089 0.911 23 H 0.126 0.874 24 H 0.121 0.879 25 H 0.121 0.879 26 H 0.113 0.887 27 H 0.118 0.882 28 H 0.098 0.902 29 H 0.150 0.850 30 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 6.895 -3.754 -1.788 8.052 hybrid contribution 1.011 -0.005 -0.103 1.016 sum 7.906 -3.759 -1.891 8.957 Atomic orbital electron populations 1.69993 1.07196 1.28467 1.28029 1.25861 0.94862 1.00788 0.93484 0.86200 0.80856 0.80732 0.78808 1.18068 1.19574 1.19593 1.18672 0.94485 0.87259 1.46793 0.88843 1.20489 0.87103 0.83458 0.90417 1.71416 1.09023 1.12770 1.32806 1.19575 0.92021 0.91537 0.98461 1.19773 0.95022 0.93180 1.07250 1.20213 0.96923 0.93517 1.03639 1.20275 0.91877 0.97746 1.10566 1.19580 0.97054 0.90243 1.05588 1.18896 0.89904 0.91488 1.11197 1.45468 1.03096 1.06369 1.68218 1.20510 0.81200 1.02633 0.93291 1.23596 0.95053 0.98571 0.99615 1.24362 0.99072 0.95163 0.95993 1.98351 1.81011 1.63591 1.63295 0.91052 0.87439 0.87863 0.87902 0.88689 0.88208 0.90168 0.85007 0.83646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -19.03 11.85 55.57 0.66 -18.38 16 2 C 0.08 1.93 5.50 -17.29 -0.10 1.84 16 3 Si 0.91 18.23 29.56 -169.99 -5.03 13.21 16 4 H -0.26 -5.01 7.11 56.52 0.40 -4.61 16 5 H -0.27 -5.34 7.11 56.52 0.40 -4.93 16 6 H -0.27 -5.34 7.11 56.52 0.40 -4.93 16 7 C -0.43 -11.11 8.99 -38.06 -0.34 -11.45 16 8 H 0.09 2.19 6.37 -52.49 -0.33 1.86 16 9 C 0.42 11.29 7.41 -155.67 -1.15 10.13 16 10 N -0.54 -15.43 9.33 -10.31 -0.10 -15.52 16 11 C 0.11 2.93 7.21 -84.89 -0.61 2.32 16 12 C -0.13 -3.01 10.07 -39.39 -0.40 -3.40 16 13 C -0.12 -2.41 9.96 -39.96 -0.40 -2.81 16 14 C -0.18 -3.49 10.04 -39.39 -0.40 -3.89 16 15 C -0.10 -2.09 10.04 -39.50 -0.40 -2.49 16 16 C -0.01 -0.18 6.88 -83.75 -0.58 -0.76 16 17 N -0.54 -12.45 2.84 -114.76 -0.33 -12.78 16 18 C 0.15 2.69 6.19 -5.19 -0.03 2.66 16 19 C -0.15 -2.33 9.85 -36.07 -0.36 -2.69 16 20 C -0.10 -1.41 10.82 28.97 0.31 -1.10 16 21 Cl -0.09 -1.36 26.25 -51.86 -1.36 -2.72 16 22 H 0.28 6.67 8.29 -40.82 -0.34 6.33 16 23 H 0.11 2.36 8.06 -52.49 -0.42 1.94 16 24 H 0.10 1.70 8.06 -52.48 -0.42 1.27 16 25 H 0.10 1.63 8.06 -52.49 -0.42 1.21 16 26 H 0.09 1.67 8.06 -52.49 -0.42 1.24 16 27 H 0.10 1.84 5.19 -51.93 -0.27 1.57 16 28 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 29 H 0.13 1.98 8.06 -52.48 -0.42 1.55 16 30 H 0.15 1.62 8.06 -52.48 -0.42 1.20 16 LS Contribution 280.47 15.07 4.23 4.23 Total: -1.00 -29.97 280.47 -9.06 -39.03 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: -2.70 Total: 4.57 kcal Atomic # 6 Polarization: -7.20 SS G_CDS: -4.44 Total: -11.64 kcal Atomic # 7 Polarization: -46.91 SS G_CDS: 0.24 Total: -46.68 kcal Atomic # 14 Polarization: 18.23 SS G_CDS: -5.03 Total: 13.21 kcal Atomic # 17 Polarization: -1.36 SS G_CDS: -1.36 Total: -2.72 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -29.97 -9.06 -39.03 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000211422541.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.489 kcal (2) G-P(sol) polarization free energy of solvation -29.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.028 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds