Wall clock time and date at job start Mon Mar 30 2020 06:30:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30588 * 1 3 3 Si 1.86801 * 120.00019 * 2 1 4 4 H 1.48509 * 109.46679 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47343 * 299.99925 * 3 2 1 6 6 H 1.48502 * 109.46843 * 60.00328 * 3 2 1 7 7 C 1.40344 * 119.99810 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00296 * 179.97438 * 7 2 1 9 9 C 1.40193 * 120.00030 * 0.02562 * 7 2 1 10 10 N 1.32465 * 125.30372 * 0.02562 * 9 7 2 11 11 C 1.33972 * 109.78122 * 179.97438 * 10 9 7 12 12 C 1.40541 * 133.19612 * 179.97438 * 11 10 9 13 13 C 1.36354 * 119.84451 * 180.02562 * 12 11 10 14 14 C 1.39041 * 120.76433 * 359.97438 * 13 12 11 15 15 C 1.37958 * 120.57170 * 359.97438 * 14 13 12 16 16 C 1.38725 * 119.76404 * 0.02562 * 15 14 13 17 17 N 1.37854 * 125.30704 * 180.24329 * 9 7 2 18 18 C 1.46504 * 126.53507 * 0.11333 * 17 9 7 19 19 C 1.50698 * 109.47136 * 270.06345 * 18 17 9 20 20 C 1.31155 * 119.99883 * 124.99896 * 19 18 17 21 21 Cl 1.73598 * 120.00072 * 0.02562 * 20 19 18 22 22 H 0.97008 * 119.99743 * 0.02562 * 1 2 3 23 23 H 1.07992 * 120.07670 * 0.02562 * 12 11 10 24 24 H 1.08007 * 119.61622 * 180.02562 * 13 12 11 25 25 H 1.08000 * 119.71389 * 179.97438 * 14 13 12 26 26 H 1.07994 * 120.12069 * 180.02562 * 15 14 13 27 27 H 1.08994 * 109.47143 * 30.06576 * 18 17 9 28 28 H 1.08999 * 109.46888 * 150.06774 * 18 17 9 29 29 H 1.08003 * 119.99974 * 305.00333 * 19 18 17 30 30 H 1.08006 * 119.99826 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3059 0.0000 0.0000 3 14 2.2399 1.6177 0.0000 4 1 3.7000 1.3463 -0.0006 5 1 1.8812 2.3965 -1.2125 6 1 1.8812 2.3964 1.2126 7 6 2.0076 -1.2154 -0.0005 8 1 3.0876 -1.2155 -0.0010 9 6 1.3066 -2.4295 -0.0016 10 7 -0.0124 -2.5519 -0.0027 11 6 -0.3474 -3.8491 -0.0041 12 6 -1.5799 -4.5244 -0.0052 13 6 -1.6068 -5.8877 -0.0060 14 6 -0.4262 -6.6222 -0.0064 15 6 0.7971 -5.9844 -0.0064 16 6 0.8510 -4.5982 -0.0056 17 7 1.8824 -3.6820 0.0025 18 6 3.3162 -3.9827 0.0111 19 6 3.8165 -4.0852 -1.4067 20 6 4.8250 -3.3453 -1.8013 21 17 5.5839 -2.2484 -0.6902 22 1 -0.4850 0.8401 -0.0004 23 1 -2.5036 -3.9648 -0.0053 24 1 -2.5560 -6.4028 -0.0072 25 1 -0.4673 -7.7015 -0.0066 26 1 1.7095 -6.5622 -0.0071 27 1 3.8513 -3.1866 0.5286 28 1 3.4860 -4.9286 0.5255 29 1 3.3446 -4.7678 -2.0979 30 1 5.1833 -3.4184 -2.8176 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000211422541.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:44 Heat of formation + Delta-G solvation = 60.414141 kcal Electronic energy + Delta-G solvation = -16968.654026 eV Core-core repulsion = 14175.954695 eV Total energy + Delta-G solvation = -2792.699331 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.057 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.14218 -38.12152 -37.59256 -35.87683 -35.14778 -32.97914 -30.87223 -30.34557 -27.65759 -27.02414 -23.13921 -22.45920 -21.62255 -20.85207 -18.85154 -17.98569 -17.63139 -16.67481 -16.49791 -16.06847 -15.63913 -14.96284 -14.63329 -14.54107 -14.40471 -13.61038 -13.28304 -13.10509 -13.04267 -12.95399 -12.54702 -12.31209 -12.18533 -11.92347 -11.89480 -11.61795 -11.09236 -10.77640 -10.17943 -9.75913 -9.01328 -8.62086 -8.49240 -6.51320 0.52751 0.80363 1.03580 1.38238 1.39728 1.41801 1.55458 2.16294 2.35522 2.50082 3.19452 3.63698 3.80963 3.94819 4.02780 4.27669 4.33527 4.49209 4.66074 4.75742 4.92307 5.00956 5.05507 5.18401 5.20764 5.27259 5.60061 5.71177 5.94102 5.99821 6.21397 6.25450 6.56493 6.81386 7.21313 8.10305 8.43606 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.015730 B = 0.009279 C = 0.006003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1779.592527 B = 3016.968667 C = 4662.966960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.033 3.967 3 Si 0.985 3.015 4 H -0.246 1.246 5 H -0.265 1.265 6 H -0.266 1.266 7 C -0.460 4.460 8 H 0.107 0.893 9 C 0.394 3.606 10 N -0.587 5.587 11 C 0.053 3.947 12 C -0.151 4.151 13 C -0.116 4.116 14 C -0.164 4.164 15 C -0.105 4.105 16 C -0.022 4.022 17 N -0.534 5.534 18 C 0.142 3.858 19 C -0.167 4.167 20 C -0.082 4.082 21 Cl -0.099 7.099 22 H 0.282 0.718 23 H 0.101 0.899 24 H 0.142 0.858 25 H 0.150 0.850 26 H 0.128 0.872 27 H 0.094 0.906 28 H 0.099 0.901 29 H 0.141 0.859 30 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.890 -6.530 -2.433 11.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.391 5.391 2 C -0.190 4.190 3 Si 0.804 3.196 4 H -0.169 1.169 5 H -0.190 1.190 6 H -0.191 1.191 7 C -0.498 4.498 8 H 0.125 0.875 9 C 0.156 3.844 10 N -0.312 5.312 11 C -0.072 4.072 12 C -0.172 4.172 13 C -0.136 4.136 14 C -0.184 4.184 15 C -0.126 4.126 16 C -0.129 4.129 17 N -0.229 5.229 18 C 0.020 3.980 19 C -0.187 4.187 20 C -0.127 4.127 21 Cl -0.071 7.071 22 H 0.092 0.908 23 H 0.119 0.881 24 H 0.160 0.840 25 H 0.167 0.833 26 H 0.146 0.854 27 H 0.112 0.888 28 H 0.117 0.883 29 H 0.158 0.842 30 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 8.330 -5.689 -2.319 10.351 hybrid contribution 0.502 0.318 0.067 0.598 sum 8.832 -5.371 -2.253 10.580 Atomic orbital electron populations 1.70131 1.09189 1.29566 1.30195 1.26886 0.95527 1.04320 0.92264 0.85114 0.79754 0.75786 0.78950 1.16881 1.18966 1.19076 1.19049 0.95168 0.87595 1.47972 0.87516 1.20783 0.87256 0.85063 0.91313 1.71266 1.10799 1.14850 1.34273 1.20113 0.94289 0.91561 1.01276 1.20047 0.94037 0.94896 1.08206 1.20660 0.99296 0.92112 1.01565 1.20887 0.90791 1.00021 1.06730 1.20044 0.99227 0.88888 1.04438 1.19294 0.89225 0.92832 1.11583 1.45606 1.04812 1.05255 1.67263 1.20750 0.78588 1.03282 0.95405 1.23470 0.96344 1.00432 0.98435 1.24816 0.97903 0.93111 0.96892 1.98357 1.80970 1.63884 1.63929 0.90762 0.88102 0.83993 0.83259 0.85371 0.88834 0.88267 0.84162 0.80223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -43.00 11.85 21.89 0.26 -42.74 16 2 C 0.03 1.67 5.50 85.39 0.47 2.14 16 3 Si 0.98 38.03 29.56 68.60 2.03 40.06 16 4 H -0.25 -8.91 7.11 99.48 0.71 -8.20 16 5 H -0.26 -9.88 7.11 99.48 0.71 -9.17 16 6 H -0.27 -9.95 7.11 99.48 0.71 -9.24 16 7 C -0.46 -24.27 8.99 23.26 0.21 -24.06 16 8 H 0.11 5.08 6.37 -2.91 -0.02 5.06 16 9 C 0.39 21.99 7.41 133.69 0.99 22.98 16 10 N -0.59 -35.55 9.33 -186.52 -1.74 -37.29 16 11 C 0.05 2.87 7.21 40.14 0.29 3.16 16 12 C -0.15 -7.01 10.07 22.39 0.23 -6.78 16 13 C -0.12 -4.27 9.96 22.02 0.22 -4.05 16 14 C -0.16 -5.54 10.04 22.40 0.22 -5.31 16 15 C -0.10 -3.95 10.04 22.32 0.22 -3.73 16 16 C -0.02 -1.03 6.88 39.05 0.27 -0.76 16 17 N -0.53 -25.14 2.84 -516.99 -1.47 -26.60 16 18 C 0.14 5.07 6.19 85.63 0.53 5.60 16 19 C -0.17 -4.98 9.85 25.49 0.25 -4.73 16 20 C -0.08 -2.13 10.82 67.63 0.73 -1.40 16 21 Cl -0.10 -2.83 26.25 -2.72 -0.07 -2.90 16 22 H 0.28 14.27 8.29 -92.70 -0.77 13.50 16 23 H 0.10 4.63 8.06 -2.91 -0.02 4.61 16 24 H 0.14 4.07 8.06 -2.91 -0.02 4.05 16 25 H 0.15 3.73 8.06 -2.91 -0.02 3.71 16 26 H 0.13 3.95 8.06 -2.91 -0.02 3.93 16 27 H 0.09 3.43 5.19 -2.39 -0.01 3.41 16 28 H 0.10 3.06 8.14 -2.39 -0.02 3.04 16 29 H 0.14 3.94 8.06 -2.91 -0.02 3.92 16 30 H 0.18 3.39 8.06 -2.91 -0.02 3.36 16 Total: -1.00 -69.24 280.47 4.80 -64.44 By element: Atomic # 1 Polarization: 20.81 SS G_CDS: 1.16 Total: 21.97 kcal Atomic # 6 Polarization: -21.56 SS G_CDS: 4.63 Total: -16.93 kcal Atomic # 7 Polarization: -103.68 SS G_CDS: -2.95 Total: -106.63 kcal Atomic # 14 Polarization: 38.03 SS G_CDS: 2.03 Total: 40.06 kcal Atomic # 17 Polarization: -2.83 SS G_CDS: -0.07 Total: -2.90 kcal Total: -69.24 4.80 -64.44 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000211422541.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.852 kcal (2) G-P(sol) polarization free energy of solvation -69.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.437 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds