Wall clock time and date at job start Mon Mar 30 2020 06:26:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35954 * 116.99964 * 2 1 4 4 C 1.37944 * 119.85233 * 5.24599 * 3 2 1 5 5 C 1.40658 * 119.76144 * 180.02562 * 4 3 2 6 6 C 1.41144 * 120.25416 * 180.02562 * 5 4 3 7 7 H 1.08007 * 119.99508 * 152.20257 * 6 5 4 8 8 C 1.39913 * 120.00601 * 332.20333 * 6 5 4 9 9 N 1.30873 * 120.00448 * 163.76826 * 8 6 5 10 10 Si 1.86805 * 119.99886 * 343.76479 * 8 6 5 11 11 H 1.48504 * 109.46718 * 95.32678 * 10 8 6 12 12 H 1.48498 * 109.47302 * 215.32716 * 10 8 6 13 13 H 1.48496 * 109.47064 * 335.32746 * 10 8 6 14 14 C 1.41344 * 119.48402 * 359.97438 * 5 4 3 15 15 O 1.35693 * 120.15479 * 179.97438 * 14 5 4 16 16 C 1.38370 * 119.69315 * 0.02562 * 14 5 4 17 17 C 1.50704 * 119.88439 * 179.97438 * 16 14 5 18 18 F 1.39901 * 109.47068 * 179.97438 * 17 16 14 19 19 F 1.39901 * 109.46809 * 59.99939 * 17 16 14 20 20 F 1.39894 * 109.47023 * 300.00318 * 17 16 14 21 21 C 1.38278 * 120.23218 * 0.25557 * 16 14 5 22 22 H 1.08998 * 109.47352 * 301.36999 * 1 2 3 23 23 H 1.09004 * 109.47042 * 61.37329 * 1 2 3 24 24 H 1.09003 * 109.46932 * 181.36994 * 1 2 3 25 25 H 1.08003 * 120.11499 * 0.02562 * 4 3 2 26 26 H 0.96995 * 120.00438 * 179.97438 * 9 8 6 27 27 H 0.96702 * 114.00182 * 270.02167 * 15 14 5 28 28 H 1.07995 * 119.73224 * 179.74624 * 21 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2964 2.3640 0.1094 5 6 1.9369 3.6163 0.1086 6 6 1.1799 4.8023 0.2205 7 1 1.6212 5.6853 0.6590 8 6 -0.1422 4.8343 -0.2364 9 7 -0.9418 5.7993 0.1407 10 14 -0.7660 3.4996 -1.3848 11 1 -1.4462 2.4434 -0.5929 12 1 -1.7261 4.0883 -2.3527 13 1 0.3785 2.9060 -2.1217 14 6 3.3445 3.6777 -0.0039 15 8 3.9764 4.8785 -0.0066 16 6 4.0751 2.5076 -0.1125 17 6 5.5761 2.5681 -0.2333 18 9 6.0889 1.2699 -0.3287 19 9 6.1098 3.1980 0.8960 20 9 5.9228 3.2923 -1.3788 21 6 3.4323 1.2833 -0.1163 22 1 -0.3634 0.5349 0.8774 23 1 -0.3633 0.4924 -0.9021 24 1 -0.3633 -1.0274 0.0246 25 1 0.2214 2.3051 0.1953 26 1 -1.8582 5.8217 -0.1763 27 1 4.0873 5.2626 -0.8871 28 1 4.0102 0.3753 -0.2055 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000216726311.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:09 Heat of formation + Delta-G solvation = -233.492549 kcal Electronic energy + Delta-G solvation = -20270.413114 eV Core-core repulsion = 16450.110377 eV Total energy + Delta-G solvation = -3820.302738 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.060 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -51.09442 -48.61535 -48.54527 -41.06897 -39.30554 -36.74490 -35.75675 -33.13292 -30.68747 -28.51359 -27.12735 -26.61501 -23.04774 -22.62325 -20.23925 -19.51242 -19.41708 -19.11980 -18.62073 -17.76563 -17.10694 -16.79045 -16.47793 -16.15810 -15.43726 -15.41655 -15.32410 -15.00407 -14.77549 -14.73526 -14.70155 -14.12905 -13.93613 -13.69919 -13.26752 -12.93341 -12.79303 -12.68155 -12.22629 -11.91105 -11.71678 -11.42557 -10.97081 -9.96539 -9.06113 -9.03177 -6.69011 0.15419 0.50503 1.14149 1.32946 1.40774 1.69935 1.99370 2.25896 2.38263 2.88093 3.05571 3.21364 3.48127 3.62606 4.17727 4.21418 4.30478 4.39706 4.58785 4.66867 4.71748 5.05985 5.18553 5.33541 5.55894 5.64549 6.04734 6.25763 6.51925 6.56570 7.04162 8.00162 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.021438 B = 0.009212 C = 0.007007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.781154 B = 3038.839014 C = 3995.133906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.325 6.325 3 C 0.157 3.843 4 C -0.302 4.302 5 C 0.079 3.921 6 C -0.448 4.448 7 H 0.068 0.932 8 C 0.049 3.951 9 N -0.824 5.824 10 Si 0.954 3.046 11 H -0.241 1.241 12 H -0.273 1.273 13 H -0.250 1.250 14 C 0.013 3.987 15 O -0.492 6.492 16 C -0.140 4.140 17 C 0.523 3.477 18 F -0.175 7.175 19 F -0.179 7.179 20 F -0.178 7.178 21 C -0.218 4.218 22 H 0.053 0.947 23 H 0.047 0.953 24 H 0.137 0.863 25 H 0.123 0.877 26 H 0.301 0.699 27 H 0.385 0.615 28 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.526 -8.423 -3.703 9.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.239 6.239 3 C 0.112 3.888 4 C -0.322 4.322 5 C 0.075 3.925 6 C -0.476 4.476 7 H 0.086 0.914 8 C -0.169 4.169 9 N -0.448 5.448 10 Si 0.776 3.224 11 H -0.166 1.166 12 H -0.199 1.199 13 H -0.174 1.174 14 C -0.033 4.033 15 O -0.302 6.302 16 C -0.142 4.142 17 C 0.469 3.531 18 F -0.157 7.157 19 F -0.161 7.161 20 F -0.159 7.159 21 C -0.238 4.238 22 H 0.071 0.929 23 H 0.066 0.934 24 H 0.155 0.845 25 H 0.140 0.860 26 H 0.112 0.888 27 H 0.240 0.760 28 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 2.427 -8.482 -3.059 9.338 hybrid contribution -0.394 0.459 -0.677 0.908 sum 2.032 -8.023 -3.736 9.081 Atomic orbital electron populations 1.23403 0.77409 1.05772 1.01266 1.85967 1.22530 1.26512 1.88883 1.18573 0.91794 0.83826 0.94631 1.21169 0.99540 0.91848 1.19654 1.17784 0.91317 0.92992 0.90371 1.19374 0.96032 0.97884 1.34295 0.91353 1.26937 0.95501 0.98281 0.96151 1.69694 1.07732 1.31813 1.35585 0.85721 0.79172 0.78525 0.78995 1.16582 1.19940 1.17399 1.18058 0.90250 0.83733 1.11253 1.84726 1.78234 1.33101 1.34172 1.19826 0.90390 0.95159 1.08854 1.17989 0.88245 0.73200 0.73658 1.93128 1.88803 1.37795 1.95949 1.93184 1.88033 1.82636 1.52209 1.93151 1.93485 1.78266 1.51038 1.19510 0.91601 0.96365 1.16324 0.92879 0.93404 0.84549 0.85966 0.88802 0.75958 0.83911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.44 9.83 113.37 1.11 1.56 15 2 O -0.33 -11.50 10.50 -93.03 -0.98 -12.48 15 3 C 0.16 6.43 6.67 22.45 0.15 6.58 15 4 C -0.30 -13.41 6.04 22.79 0.14 -13.28 15 5 C 0.08 3.85 5.19 -21.21 -0.11 3.74 15 6 C -0.45 -23.59 9.23 23.39 0.22 -23.38 15 7 H 0.07 3.96 7.86 -2.91 -0.02 3.94 15 8 C 0.05 2.43 5.44 85.24 0.46 2.90 15 9 N -0.82 -41.62 13.93 21.82 0.30 -41.31 15 10 Si 0.95 37.84 23.49 68.60 1.61 39.45 15 11 H -0.24 -8.47 6.33 99.48 0.63 -7.84 15 12 H -0.27 -10.19 7.11 99.48 0.71 -9.48 15 13 H -0.25 -10.27 6.66 99.48 0.66 -9.61 15 14 C 0.01 0.60 6.61 23.07 0.15 0.75 15 15 O -0.49 -21.27 11.70 -90.12 -1.05 -22.32 15 16 C -0.14 -5.79 5.38 -19.82 -0.11 -5.89 15 17 C 0.52 19.14 2.98 71.24 0.21 19.36 15 18 F -0.18 -5.86 15.95 44.97 0.72 -5.15 15 19 F -0.18 -6.81 16.94 44.97 0.76 -6.05 15 20 F -0.18 -6.18 16.94 44.97 0.76 -5.42 15 21 C -0.22 -8.70 9.37 22.53 0.21 -8.49 15 22 H 0.05 1.50 7.33 -2.39 -0.02 1.48 15 23 H 0.05 1.34 6.59 -2.39 -0.02 1.32 15 24 H 0.14 2.58 8.14 -2.39 -0.02 2.56 15 25 H 0.12 5.17 2.53 -2.91 -0.01 5.16 15 26 H 0.30 13.44 8.30 -92.71 -0.77 12.67 15 27 H 0.38 13.54 9.06 -74.06 -0.67 12.87 15 28 H 0.14 5.06 7.13 -2.91 -0.02 5.03 15 Total: -1.00 -56.35 253.24 5.02 -51.33 By element: Atomic # 1 Polarization: 17.66 SS G_CDS: 0.46 Total: 18.11 kcal Atomic # 6 Polarization: -18.59 SS G_CDS: 2.44 Total: -16.15 kcal Atomic # 7 Polarization: -41.62 SS G_CDS: 0.30 Total: -41.31 kcal Atomic # 8 Polarization: -32.77 SS G_CDS: -2.03 Total: -34.80 kcal Atomic # 9 Polarization: -18.86 SS G_CDS: 2.24 Total: -16.62 kcal Atomic # 14 Polarization: 37.84 SS G_CDS: 1.61 Total: 39.45 kcal Total: -56.35 5.02 -51.33 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216726311.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -182.164 kcal (2) G-P(sol) polarization free energy of solvation -56.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -238.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -233.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds