Wall clock time and date at job start Mon Mar 30 2020 06:26:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35692 * 117.00323 * 2 1 4 4 C 1.38243 * 120.16681 * 359.97438 * 3 2 1 5 5 C 1.38484 * 120.32688 * 180.02562 * 4 3 2 6 6 C 1.50699 * 119.66191 * 179.97438 * 5 4 3 7 7 F 1.39900 * 109.47229 * 90.00129 * 6 5 4 8 8 F 1.39899 * 109.47035 * 210.00235 * 6 5 4 9 9 F 1.39904 * 109.47010 * 329.99871 * 6 5 4 10 10 C 1.38523 * 120.67438 * 0.02562 * 5 4 3 11 11 C 1.38206 * 120.32374 * 359.67406 * 10 5 4 12 12 O 1.35697 * 120.16556 * 180.30421 * 11 10 5 13 13 C 1.41268 * 120.17384 * 180.02562 * 3 2 1 14 14 C 1.41000 * 120.32326 * 359.97438 * 13 3 2 15 15 H 1.07999 * 119.99416 * 143.29167 * 14 13 3 16 16 C 1.39912 * 119.99770 * 323.29030 * 14 13 3 17 17 N 1.30909 * 119.99971 * 333.82114 * 16 14 13 18 18 Si 1.86805 * 119.99645 * 153.54390 * 16 14 13 19 19 H 1.48496 * 109.46837 * 180.27337 * 18 16 14 20 20 H 1.48492 * 109.47089 * 300.27685 * 18 16 14 21 21 H 1.48499 * 109.46865 * 60.27551 * 18 16 14 22 22 H 1.09007 * 109.46720 * 299.99756 * 1 2 3 23 23 H 1.08999 * 109.47541 * 59.99391 * 1 2 3 24 24 H 1.09002 * 109.47257 * 180.02562 * 1 2 3 25 25 H 1.07995 * 119.83692 * 0.02600 * 4 3 2 26 26 H 1.08000 * 119.83471 * 179.97438 * 10 5 4 27 27 H 0.96703 * 113.99466 * 265.53997 * 12 11 10 28 28 H 0.96996 * 120.00649 * 352.61947 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0450 1.2090 0.0000 4 6 1.2955 2.3706 -0.0005 5 6 1.9209 3.6062 -0.0011 6 6 1.0892 4.8630 -0.0022 7 9 0.8313 5.2527 1.3164 8 9 1.7847 5.8818 -0.6621 9 9 -0.1205 4.6210 -0.6621 10 6 3.3030 3.6988 -0.0016 11 6 4.0789 2.5551 0.0052 12 8 5.4326 2.6496 0.0108 13 6 3.4555 1.2871 -0.0005 14 6 4.2336 0.1113 -0.0006 15 1 5.1567 0.0747 -0.5600 16 6 3.8098 -1.0080 0.7242 17 7 3.0349 -0.8566 1.7683 18 14 4.3437 -2.7188 0.1972 19 1 3.7591 -3.7256 1.1191 20 1 3.8711 -2.9807 -1.1860 21 1 5.8252 -2.8100 0.2397 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0277 0.0005 25 1 0.2171 2.3142 -0.0005 26 1 3.7765 4.6695 -0.0024 27 1 5.8335 2.6058 -0.8681 28 1 2.8413 0.0326 2.1039 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000216726374.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:18 Heat of formation + Delta-G solvation = -237.201553 kcal Electronic energy + Delta-G solvation = -20215.159480 eV Core-core repulsion = 16394.695908 eV Total energy + Delta-G solvation = -3820.463572 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.060 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -51.05944 -48.58268 -48.52610 -40.91123 -38.93042 -36.68069 -35.92854 -31.99593 -30.17051 -28.31609 -28.15726 -25.40317 -22.86909 -22.75628 -20.17908 -19.70341 -19.39780 -19.33969 -17.92913 -17.21803 -17.04973 -16.62456 -16.33162 -15.65774 -15.47508 -15.41239 -15.25741 -15.00397 -14.74607 -14.72889 -14.66759 -14.50990 -13.64939 -13.27555 -12.95960 -12.76207 -12.62907 -12.18881 -11.94182 -11.76720 -11.73274 -11.31253 -10.71053 -9.69051 -9.22915 -9.02841 -6.47108 0.35200 0.67312 1.54828 1.62120 1.82368 1.83184 2.35222 2.50697 2.68393 3.01306 3.13535 3.22635 3.61442 3.83472 4.16233 4.30282 4.36498 4.41017 4.68824 4.70150 4.93930 5.23012 5.37396 5.54293 5.65436 5.77136 5.99758 6.31029 6.71463 6.93459 7.18237 8.01933 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.027789 B = 0.007507 C = 0.006339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.355607 B = 3728.815226 C = 4416.195250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.310 6.310 3 C 0.029 3.971 4 C -0.142 4.142 5 C -0.284 4.284 6 C 0.528 3.472 7 F -0.190 7.190 8 F -0.183 7.183 9 F -0.184 7.184 10 C -0.082 4.082 11 C -0.010 4.010 12 O -0.492 6.492 13 C 0.040 3.960 14 C -0.510 4.510 15 H 0.083 0.917 16 C 0.015 3.985 17 N -0.771 5.771 18 Si 1.115 2.885 19 H -0.273 1.273 20 H -0.265 1.265 21 H -0.260 1.260 22 H 0.045 0.955 23 H 0.056 0.944 24 H 0.109 0.891 25 H 0.130 0.870 26 H 0.127 0.873 27 H 0.382 0.618 28 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.125 2.377 -4.106 5.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.224 6.224 3 C -0.016 4.016 4 C -0.161 4.161 5 C -0.287 4.287 6 C 0.474 3.526 7 F -0.172 7.172 8 F -0.165 7.165 9 F -0.166 7.166 10 C -0.101 4.101 11 C -0.056 4.056 12 O -0.301 6.301 13 C 0.036 3.964 14 C -0.536 4.536 15 H 0.101 0.899 16 C -0.205 4.205 17 N -0.391 5.391 18 Si 0.932 3.068 19 H -0.197 1.197 20 H -0.190 1.190 21 H -0.184 1.184 22 H 0.064 0.936 23 H 0.075 0.925 24 H 0.127 0.873 25 H 0.148 0.852 26 H 0.145 0.855 27 H 0.236 0.764 28 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -3.371 0.680 -3.095 4.627 hybrid contribution -0.210 2.295 -0.685 2.405 sum -3.582 2.975 -3.780 5.997 Atomic orbital electron populations 1.23088 0.79092 1.04199 1.00729 1.86167 1.20901 1.26131 1.89190 1.18966 0.91700 0.84091 1.06856 1.20518 0.99264 0.90977 1.05388 1.18779 0.93389 0.91127 1.25379 1.18029 0.77644 0.83918 0.73003 1.93161 1.94495 1.92323 1.37177 1.93117 1.79203 1.62914 1.81253 1.93111 1.47723 1.94461 1.81281 1.20639 0.91970 0.98108 0.99422 1.18134 0.82834 0.90492 1.14114 1.84720 1.16187 1.95338 1.33858 1.17889 0.89960 0.94199 0.94318 1.20539 1.08173 0.97491 1.27413 0.89907 1.28201 0.91644 1.08658 0.92040 1.70489 1.23243 1.28196 1.17182 0.83017 0.77412 0.69236 0.77116 1.19733 1.19019 1.18419 0.93639 0.92550 0.87297 0.85232 0.85497 0.76373 0.91353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.83 9.81 113.37 1.11 1.94 15 2 O -0.31 -14.22 7.41 -90.11 -0.67 -14.89 15 3 C 0.03 1.40 5.74 23.02 0.13 1.53 15 4 C -0.14 -6.11 8.37 22.33 0.19 -5.93 15 5 C -0.28 -11.89 5.47 -19.74 -0.11 -12.00 15 6 C 0.53 19.42 3.36 71.24 0.24 19.66 15 7 F -0.19 -6.99 17.30 44.97 0.78 -6.21 15 8 F -0.18 -6.41 16.43 44.97 0.74 -5.67 15 9 F -0.18 -6.44 16.43 44.97 0.74 -5.70 15 10 C -0.08 -3.54 9.30 22.33 0.21 -3.33 15 11 C -0.01 -0.47 6.73 23.01 0.15 -0.31 15 12 O -0.49 -21.03 12.93 -90.17 -1.17 -22.19 15 13 C 0.04 2.04 5.02 -21.11 -0.11 1.94 15 14 C -0.51 -25.89 8.39 23.35 0.20 -25.69 15 15 H 0.08 4.04 7.94 -2.91 -0.02 4.02 15 16 C 0.01 0.71 4.19 85.24 0.36 1.07 15 17 N -0.77 -39.95 11.94 21.83 0.26 -39.69 15 18 Si 1.11 41.55 30.01 68.60 2.06 43.61 15 19 H -0.27 -10.05 7.11 99.48 0.71 -9.34 15 20 H -0.27 -9.44 7.11 99.48 0.71 -8.73 15 21 H -0.26 -8.88 7.11 99.48 0.71 -8.18 15 22 H 0.04 1.50 7.66 -2.38 -0.02 1.48 15 23 H 0.06 1.72 7.66 -2.39 -0.02 1.70 15 24 H 0.11 3.17 8.14 -2.39 -0.02 3.15 15 25 H 0.13 4.96 5.79 -2.91 -0.02 4.94 15 26 H 0.13 4.90 7.57 -2.91 -0.02 4.88 15 27 H 0.38 12.55 9.06 -74.06 -0.67 11.87 15 28 H 0.28 15.16 7.29 -92.71 -0.68 14.48 15 Total: -1.00 -57.36 261.27 5.77 -51.59 By element: Atomic # 1 Polarization: 19.63 SS G_CDS: 0.66 Total: 20.28 kcal Atomic # 6 Polarization: -23.50 SS G_CDS: 2.37 Total: -21.13 kcal Atomic # 7 Polarization: -39.95 SS G_CDS: 0.26 Total: -39.69 kcal Atomic # 8 Polarization: -35.25 SS G_CDS: -1.83 Total: -37.08 kcal Atomic # 9 Polarization: -19.84 SS G_CDS: 2.26 Total: -17.58 kcal Atomic # 14 Polarization: 41.55 SS G_CDS: 2.06 Total: 43.61 kcal Total: -57.36 5.77 -51.59 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216726374.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -185.608 kcal (2) G-P(sol) polarization free energy of solvation -57.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -242.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -237.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds