Wall clock time and date at job start Mon Mar 30 2020 06:24:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35758 * 117.00529 * 2 1 4 4 C 1.35976 * 119.68080 * 0.02562 * 3 2 1 5 5 C 1.40738 * 120.10080 * 180.02562 * 4 3 2 6 6 C 1.40349 * 121.25985 * 180.24393 * 5 4 3 7 7 C 1.36274 * 119.62522 * 180.23853 * 6 5 4 8 8 C 1.39282 * 121.66881 * 359.45778 * 7 6 5 9 9 Cl 1.73598 * 119.22343 * 180.27839 * 8 7 6 10 10 C 1.36178 * 121.54587 * 0.30072 * 8 7 6 11 11 C 1.40900 * 119.47644 * 359.97362 * 10 8 7 12 12 C 1.39762 * 121.36427 * 180.02562 * 11 10 8 13 13 C 1.40016 * 119.35767 * 179.97438 * 12 11 10 14 14 C 1.41013 * 119.89529 * 179.97438 * 13 12 11 15 15 H 1.08000 * 120.00230 * 154.56715 * 14 13 12 16 16 C 1.40018 * 119.99465 * 334.57265 * 14 13 12 17 17 N 1.30805 * 120.00256 * 342.17817 * 16 14 13 18 18 Si 1.86802 * 119.99651 * 162.18031 * 16 14 13 19 19 H 1.48502 * 109.47184 * 94.63541 * 18 16 14 20 20 H 1.48498 * 109.46794 * 214.63198 * 18 16 14 21 21 H 1.48498 * 109.47267 * 334.63452 * 18 16 14 22 22 H 1.09006 * 109.46895 * 300.00311 * 1 2 3 23 23 H 1.08995 * 109.47226 * 60.00029 * 1 2 3 24 24 H 1.08996 * 109.47464 * 180.02562 * 1 2 3 25 25 H 1.08001 * 119.95175 * 359.97438 * 4 3 2 26 26 H 1.07999 * 120.19051 * 359.97438 * 6 5 4 27 27 H 1.08004 * 119.16530 * 179.73584 * 7 6 5 28 28 H 1.08002 * 120.26228 * 180.02562 * 10 8 7 29 29 H 1.07993 * 120.31835 * 359.95750 * 12 11 10 30 30 H 0.97003 * 120.00243 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2096 0.0000 4 6 1.2986 2.3459 0.0005 5 6 1.9284 3.6045 0.0000 6 6 1.1815 4.7927 0.0056 7 6 1.8258 5.9934 0.0000 8 6 3.2161 6.0773 -0.0001 9 17 3.9709 7.6405 -0.0001 10 6 3.9971 4.9617 -0.0006 11 6 3.3899 3.6902 -0.0005 12 6 4.1534 2.5195 -0.0005 13 6 3.5061 1.2780 0.0001 14 6 4.2652 0.0896 -0.0004 15 1 3.8445 -0.8202 0.4017 16 6 5.5646 0.0893 -0.5222 17 7 5.9532 1.0581 -1.3104 18 14 6.7431 -1.2949 -0.0926 19 1 6.6904 -2.3361 -1.1502 20 1 8.1239 -0.7572 0.0042 21 1 6.3519 -1.8920 1.2096 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 0.2204 2.2825 0.0005 26 1 0.1021 4.7556 0.0101 27 1 1.2437 6.9031 0.0000 28 1 5.0735 5.0508 -0.0003 29 1 5.2320 2.5721 -0.0013 30 1 6.8532 1.0577 -1.6721 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000216818251.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:46 Heat of formation + Delta-G solvation = -29.842499 kcal Electronic energy + Delta-G solvation = -16694.707549 eV Core-core repulsion = 13865.801645 eV Total energy + Delta-G solvation = -2828.905904 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.050 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.79585 -39.36856 -37.49478 -36.63428 -34.66525 -33.02692 -31.20354 -29.40967 -28.05044 -27.20659 -23.55833 -23.17464 -22.27164 -19.58347 -18.93689 -17.96351 -17.24715 -16.64240 -16.35109 -15.85074 -15.67208 -15.34327 -14.59161 -14.37885 -14.19632 -14.05150 -13.56482 -13.05388 -12.93319 -12.82397 -12.64767 -12.47196 -12.16813 -12.11261 -11.81714 -11.72088 -11.28878 -11.23505 -10.70592 -10.44980 -9.02764 -8.74263 -8.39147 -6.29635 -0.05396 0.33639 1.31699 1.34538 1.39308 1.52966 1.58581 2.11521 2.19274 2.66548 2.90376 3.63120 3.88456 4.24110 4.28548 4.41467 4.47640 4.53714 4.60329 4.70467 4.76368 4.95454 5.02620 5.09921 5.31343 5.47710 5.56277 5.57626 5.79891 5.84012 6.09029 6.24442 6.39111 6.64424 6.76829 7.01446 8.21012 Molecular weight = 262.05amu Principal moments of inertia in cm(-1) A = 0.017861 B = 0.006993 C = 0.005105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.293703 B = 4002.859454 C = 5483.670000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.333 6.333 3 C 0.071 3.929 4 C -0.201 4.201 5 C -0.125 4.125 6 C -0.070 4.070 7 C -0.176 4.176 8 C -0.025 4.025 9 Cl -0.088 7.088 10 C -0.147 4.147 11 C -0.027 4.027 12 C -0.226 4.226 13 C 0.076 3.924 14 C -0.457 4.457 15 H 0.083 0.917 16 C 0.032 3.968 17 N -0.804 5.804 18 Si 0.985 3.015 19 H -0.260 1.260 20 H -0.264 1.264 21 H -0.257 1.257 22 H 0.060 0.940 23 H 0.057 0.943 24 H 0.117 0.883 25 H 0.146 0.854 26 H 0.152 0.848 27 H 0.143 0.857 28 H 0.116 0.884 29 H 0.110 0.890 30 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.416 2.658 1.793 7.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.247 6.247 3 C 0.026 3.974 4 C -0.220 4.220 5 C -0.126 4.126 6 C -0.088 4.088 7 C -0.195 4.195 8 C -0.051 4.051 9 Cl -0.059 7.059 10 C -0.166 4.166 11 C -0.027 4.027 12 C -0.247 4.247 13 C 0.073 3.927 14 C -0.484 4.484 15 H 0.101 0.899 16 C -0.186 4.186 17 N -0.428 5.428 18 Si 0.805 3.195 19 H -0.185 1.185 20 H -0.189 1.189 21 H -0.180 1.180 22 H 0.079 0.921 23 H 0.076 0.924 24 H 0.135 0.865 25 H 0.163 0.837 26 H 0.169 0.831 27 H 0.160 0.840 28 H 0.134 0.866 29 H 0.128 0.872 30 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -6.078 2.672 1.634 6.837 hybrid contribution 0.691 -0.239 -0.074 0.735 sum -5.387 2.433 1.560 6.113 Atomic orbital electron populations 1.23254 0.77618 1.04940 1.01671 1.85970 1.22383 1.27575 1.88803 1.20372 0.92217 0.84245 1.00611 1.20743 0.99451 0.90860 1.10912 1.18779 0.91676 0.93868 1.08314 1.20968 0.99913 0.90257 0.97656 1.20450 0.91509 0.99013 1.08496 1.20441 0.93523 0.84924 1.06210 1.98297 1.82609 1.27782 1.97199 1.20749 0.99084 0.90891 1.05902 1.19023 0.92809 0.92893 0.98017 1.20789 0.98285 0.89816 1.15779 1.18372 0.87679 0.94620 0.92014 1.19813 0.98427 0.96571 1.33615 0.89915 1.26859 0.99887 0.99820 0.92000 1.69871 1.20066 1.32196 1.20695 0.85144 0.76794 0.77543 0.80063 1.18456 1.18871 1.18011 0.92104 0.92449 0.86486 0.83674 0.83074 0.83968 0.86631 0.87171 0.89599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.55 9.80 113.37 1.11 1.66 16 2 O -0.33 -14.02 9.85 -90.84 -0.90 -14.91 16 3 C 0.07 3.32 6.82 23.82 0.16 3.48 16 4 C -0.20 -8.26 8.72 22.36 0.19 -8.06 16 5 C -0.13 -5.38 5.88 -20.03 -0.12 -5.50 16 6 C -0.07 -2.43 9.77 22.33 0.22 -2.21 16 7 C -0.18 -5.94 9.66 22.06 0.21 -5.73 16 8 C -0.02 -0.92 6.26 22.04 0.14 -0.78 16 9 Cl -0.09 -2.79 28.89 -2.72 -0.08 -2.87 16 10 C -0.15 -6.37 9.53 22.44 0.21 -6.16 16 11 C -0.03 -1.29 5.87 -20.13 -0.12 -1.41 16 12 C -0.23 -12.02 8.44 23.07 0.19 -11.83 16 13 C 0.08 4.07 5.71 -20.09 -0.11 3.95 16 14 C -0.46 -24.14 8.73 23.38 0.20 -23.94 16 15 H 0.08 4.28 7.69 -2.91 -0.02 4.26 16 16 C 0.03 1.55 5.12 85.28 0.44 1.99 16 17 N -0.80 -41.22 10.99 21.84 0.24 -40.98 16 18 Si 0.98 37.10 29.60 68.60 2.03 39.13 16 19 H -0.26 -9.38 7.11 99.48 0.71 -8.68 16 20 H -0.26 -9.49 7.11 99.48 0.71 -8.78 16 21 H -0.26 -9.50 7.11 99.48 0.71 -8.80 16 22 H 0.06 1.51 7.63 -2.38 -0.02 1.49 16 23 H 0.06 1.47 7.63 -2.39 -0.02 1.45 16 24 H 0.12 2.53 8.14 -2.39 -0.02 2.51 16 25 H 0.15 4.74 6.16 -2.91 -0.02 4.72 16 26 H 0.15 4.03 8.06 -2.91 -0.02 4.01 16 27 H 0.14 3.88 8.06 -2.91 -0.02 3.86 16 28 H 0.12 4.93 8.06 -2.91 -0.02 4.91 16 29 H 0.11 6.14 6.19 -2.91 -0.02 6.12 16 30 H 0.29 13.49 8.30 -92.71 -0.77 12.72 16 Total: -1.00 -59.57 276.85 5.20 -54.37 By element: Atomic # 1 Polarization: 18.62 SS G_CDS: 1.17 Total: 19.79 kcal Atomic # 6 Polarization: -57.26 SS G_CDS: 2.74 Total: -54.53 kcal Atomic # 7 Polarization: -41.22 SS G_CDS: 0.24 Total: -40.98 kcal Atomic # 8 Polarization: -14.02 SS G_CDS: -0.90 Total: -14.91 kcal Atomic # 14 Polarization: 37.10 SS G_CDS: 2.03 Total: 39.13 kcal Atomic # 17 Polarization: -2.79 SS G_CDS: -0.08 Total: -2.87 kcal Total: -59.57 5.20 -54.37 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216818251.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.527 kcal (2) G-P(sol) polarization free energy of solvation -59.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds