Wall clock time and date at job start Mon Mar 30 2020 06:36:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30501 * 125.72241 * 2 1 4 4 C 1.34161 * 109.36139 * 180.02562 * 3 2 1 5 5 C 1.34634 * 108.21478 * 359.73069 * 4 3 2 6 6 N 1.35932 * 125.72333 * 180.02562 * 2 1 3 7 7 C 1.39698 * 126.48678 * 359.97256 * 6 2 1 8 8 C 1.39369 * 119.83624 * 245.00687 * 7 6 2 9 9 C 1.36411 * 120.19003 * 179.97438 * 8 7 6 10 10 C 1.40862 * 119.84091 * 0.02562 * 9 8 7 11 11 C 1.41190 * 120.16547 * 180.02562 * 10 9 8 12 12 H 1.07994 * 119.99836 * 24.54730 * 11 10 9 13 13 C 1.39925 * 120.00001 * 204.54458 * 11 10 9 14 14 N 1.30849 * 120.00082 * 17.94242 * 13 11 10 15 15 Si 1.86805 * 119.99781 * 197.94515 * 13 11 10 16 16 H 1.48494 * 109.47092 * 359.97438 * 15 13 11 17 17 H 1.48501 * 109.46999 * 120.00158 * 15 13 11 18 18 H 1.48498 * 109.46772 * 239.99539 * 15 13 11 19 19 C 1.40810 * 119.66822 * 359.97438 * 10 9 8 20 20 C 1.36525 * 119.81105 * 0.02562 * 19 10 9 21 21 Cl 1.73598 * 119.92634 * 179.72629 * 20 19 10 22 22 H 1.09002 * 109.47302 * 269.97346 * 1 2 3 23 23 H 1.09003 * 109.47047 * 29.97610 * 1 2 3 24 24 H 1.08999 * 109.47087 * 149.97243 * 1 2 3 25 25 H 1.07999 * 125.88647 * 180.02562 * 4 3 2 26 26 H 1.08007 * 126.58182 * 180.26566 * 5 4 3 27 27 H 1.08002 * 119.90310 * 0.02562 * 8 7 6 28 28 H 1.07997 * 120.07658 * 179.97438 * 9 8 7 29 29 H 0.96998 * 120.00181 * 180.02562 * 14 13 11 30 30 H 1.08002 * 120.09433 * 180.02562 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2690 1.0595 0.0000 4 6 3.5562 0.6816 -0.0006 5 6 3.5998 -0.6641 0.0051 6 7 2.3007 -1.1036 -0.0005 7 6 1.8739 -2.4337 -0.0006 8 6 2.1488 -3.2502 1.0950 9 6 1.7350 -4.5500 1.1028 10 6 1.0283 -5.0673 -0.0005 11 6 0.5963 -6.4114 0.0005 12 1 0.4382 -6.9270 0.9362 13 6 0.3729 -7.0755 -1.2107 14 7 0.8824 -6.6030 -2.3195 15 14 -0.6527 -8.6364 -1.2448 16 1 -1.1096 -8.9586 0.1309 17 1 -1.8321 -8.4347 -2.1242 18 1 0.1690 -9.7572 -1.7682 19 6 0.7540 -4.2367 -1.1040 20 6 1.1747 -2.9379 -1.0972 21 17 0.8443 -1.9133 -2.4590 22 1 -0.3634 -0.0005 1.0277 23 1 -0.3633 0.8902 -0.5135 24 1 -0.3633 -0.8897 -0.5143 25 1 4.4101 1.3428 -0.0003 26 1 4.4875 -1.2793 0.0102 27 1 2.6904 -2.8524 1.9405 28 1 1.9494 -5.1812 1.9525 29 1 0.7272 -7.0631 -3.1592 30 1 0.2123 -4.6260 -1.9534 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000216818752.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:54 Heat of formation + Delta-G solvation = 53.050234 kcal Electronic energy + Delta-G solvation = -16906.644678 eV Core-core repulsion = 14113.626024 eV Total energy + Delta-G solvation = -2793.018654 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.057 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.98563 -39.71071 -37.33770 -36.07825 -34.20747 -32.58167 -31.40637 -30.84236 -27.88339 -26.94832 -23.66679 -23.18147 -21.92131 -20.73643 -19.52756 -18.63013 -17.43222 -16.65562 -16.16606 -15.51252 -15.33296 -15.17453 -14.68354 -14.48743 -14.18512 -13.99971 -13.64194 -13.47391 -13.27795 -13.01194 -12.85541 -12.67262 -12.20498 -11.99959 -11.82756 -11.60287 -11.22614 -10.97965 -10.68483 -9.60577 -9.46451 -9.16724 -8.83561 -6.54676 0.41141 0.80922 1.22753 1.30845 1.40501 1.47342 1.56206 2.12673 2.15709 2.22618 2.47421 3.41651 3.67686 4.04781 4.14327 4.48805 4.54323 4.65088 4.69836 4.84274 4.87183 4.92781 4.98658 5.10932 5.20280 5.38808 5.46419 5.71673 5.81392 5.96489 5.98553 6.33849 6.53733 6.68327 6.75712 7.21321 8.10909 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.034882 B = 0.006032 C = 0.005615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.518644 B = 4640.652405 C = 4985.061781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.199 3.801 3 N -0.524 5.524 4 C -0.046 4.046 5 C -0.065 4.065 6 N -0.380 5.380 7 C -0.054 4.054 8 C -0.051 4.051 9 C -0.222 4.222 10 C 0.099 3.901 11 C -0.461 4.461 12 H 0.096 0.904 13 C 0.036 3.964 14 N -0.802 5.802 15 Si 0.986 3.014 16 H -0.251 1.251 17 H -0.265 1.265 18 H -0.266 1.266 19 C -0.174 4.174 20 C 0.011 3.989 21 Cl -0.092 7.092 22 H 0.086 0.914 23 H 0.095 0.905 24 H 0.067 0.933 25 H 0.193 0.807 26 H 0.184 0.816 27 H 0.125 0.875 28 H 0.124 0.876 29 H 0.297 0.703 30 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.378 2.213 2.152 3.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.062 4.062 3 N -0.244 5.244 4 C -0.193 4.193 5 C -0.197 4.197 6 N -0.057 5.057 7 C -0.147 4.147 8 C -0.071 4.071 9 C -0.242 4.242 10 C 0.096 3.904 11 C -0.488 4.488 12 H 0.114 0.886 13 C -0.183 4.183 14 N -0.425 5.425 15 Si 0.806 3.194 16 H -0.174 1.174 17 H -0.190 1.190 18 H -0.190 1.190 19 C -0.195 4.195 20 C -0.017 4.017 21 Cl -0.064 7.064 22 H 0.105 0.895 23 H 0.113 0.887 24 H 0.086 0.914 25 H 0.210 0.790 26 H 0.201 0.799 27 H 0.143 0.857 28 H 0.142 0.858 29 H 0.108 0.892 30 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -0.683 2.937 1.765 3.494 hybrid contribution 0.207 -1.365 -0.501 1.468 sum -0.475 1.572 1.264 2.073 Atomic orbital electron populations 1.20261 0.84465 1.03952 1.03794 1.23860 0.96388 0.81155 1.04760 1.70172 1.03151 1.28675 1.22437 1.22595 0.94906 0.92977 1.08868 1.23176 0.87684 0.96942 1.11915 1.42535 1.06325 1.04682 1.52153 1.16814 1.16167 0.83897 0.97793 1.20383 0.98244 0.93391 0.95055 1.20901 1.06215 0.95578 1.01474 1.17940 0.88181 0.93636 0.90663 1.20071 1.37735 0.96176 0.94780 0.88552 1.26916 0.94236 1.02992 0.94106 1.69845 1.32154 1.39425 1.01063 0.85076 0.78098 0.76053 0.80201 1.17418 1.19006 1.19029 1.20853 1.06188 0.90263 1.02148 1.20540 1.01791 0.91810 0.87531 1.98286 1.94327 1.68596 1.45142 0.89515 0.88671 0.91386 0.79022 0.79906 0.85725 0.85806 0.89235 0.86169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.16 9.87 71.24 0.70 -1.46 16 2 C 0.20 7.60 7.02 137.84 0.97 8.57 16 3 N -0.52 -20.04 11.24 -187.49 -2.11 -22.15 16 4 C -0.05 -1.56 11.85 83.51 0.99 -0.57 16 5 C -0.06 -2.26 11.47 83.04 0.95 -1.31 16 6 N -0.38 -14.84 2.42 -336.24 -0.81 -15.66 16 7 C -0.05 -2.28 5.45 38.46 0.21 -2.07 16 8 C -0.05 -2.05 9.84 22.12 0.22 -1.83 16 9 C -0.22 -9.37 9.74 22.49 0.22 -9.15 16 10 C 0.10 4.69 5.57 -21.28 -0.12 4.57 16 11 C -0.46 -21.23 9.04 23.40 0.21 -21.02 16 12 H 0.10 4.16 7.91 -2.91 -0.02 4.14 16 13 C 0.04 1.59 5.13 85.25 0.44 2.03 16 14 N -0.80 -37.25 10.96 21.82 0.24 -37.02 16 15 Si 0.99 33.01 29.60 68.60 2.03 35.04 16 16 H -0.25 -8.12 7.11 99.48 0.71 -7.41 16 17 H -0.27 -8.73 7.11 99.48 0.71 -8.02 16 18 H -0.27 -8.63 7.11 99.48 0.71 -7.92 16 19 C -0.17 -8.29 8.41 22.50 0.19 -8.10 16 20 C 0.01 0.49 5.58 22.17 0.12 0.61 16 21 Cl -0.09 -3.73 25.85 -2.72 -0.07 -3.80 16 22 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 23 H 0.09 2.75 8.14 -2.39 -0.02 2.73 16 24 H 0.07 2.36 5.60 -2.39 -0.01 2.35 16 25 H 0.19 5.00 8.06 -2.91 -0.02 4.98 16 26 H 0.18 5.48 8.06 -2.91 -0.02 5.46 16 27 H 0.12 4.39 8.06 -2.91 -0.02 4.36 16 28 H 0.12 4.71 8.06 -2.91 -0.02 4.69 16 29 H 0.30 12.40 8.30 -92.71 -0.77 11.63 16 30 H 0.12 6.03 6.16 -2.91 -0.02 6.02 16 Total: -1.00 -53.35 276.84 5.55 -47.81 By element: Atomic # 1 Polarization: 24.34 SS G_CDS: 1.16 Total: 25.50 kcal Atomic # 6 Polarization: -34.83 SS G_CDS: 5.10 Total: -29.73 kcal Atomic # 7 Polarization: -72.14 SS G_CDS: -2.68 Total: -74.82 kcal Atomic # 14 Polarization: 33.01 SS G_CDS: 2.03 Total: 35.04 kcal Atomic # 17 Polarization: -3.73 SS G_CDS: -0.07 Total: -3.80 kcal Total: -53.35 5.55 -47.81 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216818752.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.856 kcal (2) G-P(sol) polarization free energy of solvation -53.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.805 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds