Wall clock time and date at job start Mon Mar 30 2020 06:35:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38451 * 119.91160 * 2 1 4 4 C 1.38408 * 120.33932 * 180.02562 * 3 2 1 5 5 C 1.37899 * 120.16888 * 359.97438 * 4 3 2 6 6 C 1.39826 * 119.82755 * 0.02562 * 5 4 3 7 7 C 1.47409 * 120.16542 * 179.97438 * 6 5 4 8 8 N 1.32139 * 125.37461 * 180.02562 * 7 6 5 9 9 C 1.32504 * 110.03911 * 179.97438 * 8 7 6 10 10 Cl 1.73597 * 126.07135 * 179.97438 * 9 8 7 11 11 C 1.40190 * 107.85187 * 359.74143 * 9 8 7 12 12 C 1.39662 * 126.96619 * 180.30686 * 11 9 8 13 13 H 1.08001 * 120.00326 * 352.98589 * 12 11 9 14 14 C 1.40124 * 119.99816 * 172.98525 * 12 11 9 15 15 N 1.30835 * 120.00397 * 6.11174 * 14 12 11 16 16 Si 1.86800 * 120.00203 * 186.10680 * 14 12 11 17 17 H 1.48502 * 109.47098 * 59.99646 * 16 14 12 18 18 H 1.48492 * 109.47429 * 180.02562 * 16 14 12 19 19 H 1.48507 * 109.47117 * 300.00457 * 16 14 12 20 20 N 1.36733 * 125.37896 * 359.97438 * 7 6 5 21 21 H 0.96994 * 126.60194 * 0.02562 * 20 7 6 22 22 C 1.37849 * 119.91864 * 180.23250 * 2 1 3 23 23 H 1.08990 * 109.46879 * 90.00452 * 1 2 3 24 24 H 1.09002 * 109.46501 * 210.00453 * 1 2 3 25 25 H 1.08999 * 109.46910 * 329.99883 * 1 2 3 26 26 H 1.07995 * 119.82928 * 359.97438 * 3 2 1 27 27 H 1.07994 * 119.91603 * 179.97438 * 4 3 2 28 28 H 1.07999 * 120.08379 * 179.97438 * 5 4 3 29 29 H 0.96999 * 120.00252 * 180.02562 * 15 14 12 30 30 H 1.08005 * 120.08661 * 0.02562 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1975 1.2001 0.0000 4 6 3.5815 1.2104 -0.0005 5 6 4.2834 0.0234 -0.0005 6 6 3.5932 -1.1926 -0.0005 7 6 4.3360 -2.4659 -0.0011 8 7 3.7909 -3.6696 -0.0017 9 6 4.7375 -4.5968 -0.0026 10 17 4.4859 -6.3144 -0.0030 11 6 5.9782 -3.9442 -0.0087 12 6 7.2409 -4.5409 -0.0177 13 1 7.3333 -5.6111 0.0937 14 6 8.3880 -3.7509 -0.1711 15 7 8.2869 -2.4465 -0.1860 16 14 10.0617 -4.5599 -0.3544 17 1 10.0618 -5.4301 -1.5577 18 1 11.1045 -3.5128 -0.5001 19 1 10.3495 -5.3803 0.8496 20 7 5.6979 -2.5879 -0.0022 21 1 6.3434 -1.8640 -0.0023 22 6 2.1946 -1.1948 -0.0048 23 1 -0.3633 -0.0001 -1.0276 24 1 -0.3632 -0.8900 0.5139 25 1 -0.3633 0.8900 0.5139 26 1 1.6533 2.1329 -0.0004 27 1 4.1131 2.1505 -0.0009 28 1 5.3633 0.0331 -0.0014 29 1 9.0810 -1.8997 -0.2926 30 1 1.6547 -2.1302 -0.0091 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000222757739.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:38 Heat of formation + Delta-G solvation = 37.227468 kcal Electronic energy + Delta-G solvation = -16442.626879 eV Core-core repulsion = 13648.922098 eV Total energy + Delta-G solvation = -2793.704781 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.057 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.15552 -38.44460 -35.17932 -34.13717 -32.56183 -31.03600 -30.62025 -28.64440 -26.47438 -24.99417 -22.37990 -21.35072 -19.75713 -19.02626 -18.19581 -16.30437 -15.53321 -15.08644 -14.50806 -14.29620 -13.85349 -13.36087 -13.30119 -13.06513 -12.70315 -12.62884 -11.99073 -11.89991 -11.72521 -11.47309 -11.10181 -10.78588 -10.66991 -10.58986 -10.56316 -10.01877 -9.79744 -8.74163 -8.69872 -8.36567 -8.27361 -7.27822 -7.05260 -4.60302 1.61504 1.87140 2.76964 2.90543 2.94365 3.41825 3.43796 3.68978 3.91682 4.62510 4.67818 4.94998 5.18573 5.26369 5.44955 5.57251 5.76031 5.79736 5.87766 6.06448 6.12282 6.39738 6.48945 6.64816 6.82704 6.91042 6.98323 7.11665 7.37531 7.41352 7.49964 7.99481 8.23843 8.41222 9.10860 9.35918 9.79486 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.021769 B = 0.006139 C = 0.004804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.904737 B = 4560.068191 C = 5826.990435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.085 4.085 3 C -0.151 4.151 4 C -0.108 4.108 5 C -0.142 4.142 6 C 0.049 3.951 7 C 0.109 3.891 8 N -0.439 5.439 9 C -0.079 4.079 10 Cl -0.060 7.060 11 C 0.240 3.760 12 C -0.421 4.421 13 H 0.105 0.895 14 C 0.068 3.932 15 N -0.831 5.831 16 Si 0.937 3.063 17 H -0.260 1.260 18 H -0.276 1.276 19 H -0.260 1.260 20 N -0.563 5.563 21 H 0.429 0.571 22 C -0.110 4.110 23 H 0.066 0.934 24 H 0.065 0.935 25 H 0.061 0.939 26 H 0.112 0.888 27 H 0.116 0.884 28 H 0.116 0.884 29 H 0.294 0.706 30 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.756 5.111 -0.019 6.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.085 4.085 3 C -0.170 4.170 4 C -0.126 4.126 5 C -0.162 4.162 6 C 0.047 3.953 7 C -0.139 4.139 8 N -0.159 5.159 9 C -0.239 4.239 10 Cl -0.032 7.032 11 C 0.119 3.881 12 C -0.456 4.456 13 H 0.123 0.877 14 C -0.148 4.148 15 N -0.461 5.461 16 Si 0.761 3.239 17 H -0.184 1.184 18 H -0.201 1.201 19 H -0.185 1.185 20 N -0.182 5.182 21 H 0.276 0.724 22 C -0.130 4.130 23 H 0.084 0.916 24 H 0.084 0.916 25 H 0.080 0.920 26 H 0.131 0.869 27 H 0.134 0.866 28 H 0.134 0.866 29 H 0.105 0.895 30 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -4.578 5.025 -0.029 6.797 hybrid contribution 1.957 0.066 -0.121 1.961 sum -2.622 5.091 -0.150 5.728 Atomic orbital electron populations 1.20740 0.91684 1.02296 1.01905 1.19738 0.95619 0.93032 1.00077 1.20864 0.94085 0.96934 1.05073 1.20837 0.94094 0.97282 1.00372 1.21054 0.99536 0.91739 1.03832 1.17664 0.92241 0.88850 0.96508 1.20006 0.81329 0.91383 1.21133 1.68889 1.33976 0.97330 1.15679 1.20515 0.89349 0.84284 1.29718 1.98187 1.97201 1.09563 1.98288 1.18456 0.93224 0.81497 0.94888 1.18869 0.87759 0.96314 1.42694 0.87719 1.26095 1.02708 0.94530 0.91484 1.68912 1.33468 1.05685 1.38021 0.85840 0.78249 0.79422 0.80384 1.18442 1.20133 1.18478 1.43679 1.06398 1.07981 1.60156 0.72371 1.21003 0.92806 0.97684 1.01504 0.91573 0.91645 0.92041 0.86944 0.86602 0.86622 0.89496 0.85338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.32 10.01 36.01 0.36 -0.96 16 2 C -0.08 -1.33 5.87 -104.68 -0.61 -1.94 16 3 C -0.15 -2.22 9.70 -39.44 -0.38 -2.61 16 4 C -0.11 -1.68 10.03 -39.64 -0.40 -2.07 16 5 C -0.14 -2.62 9.70 -39.11 -0.38 -3.00 16 6 C 0.05 1.04 5.88 -104.96 -0.62 0.42 16 7 C 0.11 2.66 7.75 -154.01 -1.19 1.47 16 8 N -0.44 -11.27 10.76 -7.35 -0.08 -11.34 16 9 C -0.08 -2.04 7.84 -16.53 -0.13 -2.17 16 10 Cl -0.06 -1.34 29.10 -51.86 -1.51 -2.85 16 11 C 0.24 6.26 6.74 -83.59 -0.56 5.69 16 12 C -0.42 -10.43 9.18 -38.34 -0.35 -10.79 16 13 H 0.10 2.48 7.81 -52.49 -0.41 2.07 16 14 C 0.07 1.56 5.49 -17.27 -0.09 1.46 16 15 N -0.83 -19.08 10.81 55.56 0.60 -18.48 16 16 Si 0.94 17.31 29.57 -169.99 -5.03 12.28 16 17 H -0.26 -4.80 7.11 56.52 0.40 -4.40 16 18 H -0.28 -4.96 7.11 56.52 0.40 -4.56 16 19 H -0.26 -4.76 7.11 56.52 0.40 -4.36 16 20 N -0.56 -14.02 5.74 -8.20 -0.05 -14.07 16 21 H 0.43 10.25 5.56 -40.82 -0.23 10.02 16 22 C -0.11 -2.08 9.34 -39.12 -0.37 -2.44 16 23 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 24 H 0.06 0.76 8.08 -51.93 -0.42 0.35 16 25 H 0.06 0.63 8.08 -51.93 -0.42 0.21 16 26 H 0.11 1.34 8.06 -52.49 -0.42 0.91 16 27 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 28 H 0.12 2.10 7.13 -52.49 -0.37 1.73 16 29 H 0.29 6.11 8.30 -40.82 -0.34 5.77 16 30 H 0.13 2.48 7.82 -52.48 -0.41 2.07 16 LS Contribution 281.86 15.07 4.25 4.25 Total: -1.00 -26.77 281.86 -9.21 -35.98 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: -2.66 Total: 11.16 kcal Atomic # 6 Polarization: -12.21 SS G_CDS: -4.73 Total: -16.94 kcal Atomic # 7 Polarization: -44.36 SS G_CDS: 0.47 Total: -43.89 kcal Atomic # 14 Polarization: 17.31 SS G_CDS: -5.03 Total: 12.28 kcal Atomic # 17 Polarization: -1.34 SS G_CDS: -1.51 Total: -2.85 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -26.77 -9.21 -35.98 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000222757739.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.204 kcal (2) G-P(sol) polarization free energy of solvation -26.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.976 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds