Wall clock time and date at job start Mon Mar 30 2020 06:35:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38451 * 119.91160 * 2 1 4 4 C 1.38408 * 120.33932 * 180.02562 * 3 2 1 5 5 C 1.37899 * 120.16888 * 359.97438 * 4 3 2 6 6 C 1.39826 * 119.82755 * 0.02562 * 5 4 3 7 7 C 1.47409 * 120.16542 * 179.97438 * 6 5 4 8 8 N 1.32139 * 125.37461 * 180.02562 * 7 6 5 9 9 C 1.32504 * 110.03911 * 179.97438 * 8 7 6 10 10 Cl 1.73597 * 126.07135 * 179.97438 * 9 8 7 11 11 C 1.40190 * 107.85187 * 359.74143 * 9 8 7 12 12 C 1.39662 * 126.96619 * 180.30686 * 11 9 8 13 13 H 1.08001 * 120.00326 * 352.98589 * 12 11 9 14 14 C 1.40124 * 119.99816 * 172.98525 * 12 11 9 15 15 N 1.30835 * 120.00397 * 6.11174 * 14 12 11 16 16 Si 1.86800 * 120.00203 * 186.10680 * 14 12 11 17 17 H 1.48502 * 109.47098 * 59.99646 * 16 14 12 18 18 H 1.48492 * 109.47429 * 180.02562 * 16 14 12 19 19 H 1.48507 * 109.47117 * 300.00457 * 16 14 12 20 20 N 1.36733 * 125.37896 * 359.97438 * 7 6 5 21 21 H 0.96994 * 126.60194 * 0.02562 * 20 7 6 22 22 C 1.37849 * 119.91864 * 180.23250 * 2 1 3 23 23 H 1.08990 * 109.46879 * 90.00452 * 1 2 3 24 24 H 1.09002 * 109.46501 * 210.00453 * 1 2 3 25 25 H 1.08999 * 109.46910 * 329.99883 * 1 2 3 26 26 H 1.07995 * 119.82928 * 359.97438 * 3 2 1 27 27 H 1.07994 * 119.91603 * 179.97438 * 4 3 2 28 28 H 1.07999 * 120.08379 * 179.97438 * 5 4 3 29 29 H 0.96999 * 120.00252 * 180.02562 * 15 14 12 30 30 H 1.08005 * 120.08661 * 0.02562 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1975 1.2001 0.0000 4 6 3.5815 1.2104 -0.0005 5 6 4.2834 0.0234 -0.0005 6 6 3.5932 -1.1926 -0.0005 7 6 4.3360 -2.4659 -0.0011 8 7 3.7909 -3.6696 -0.0017 9 6 4.7375 -4.5968 -0.0026 10 17 4.4859 -6.3144 -0.0030 11 6 5.9782 -3.9442 -0.0087 12 6 7.2409 -4.5409 -0.0177 13 1 7.3333 -5.6111 0.0937 14 6 8.3880 -3.7509 -0.1711 15 7 8.2869 -2.4465 -0.1860 16 14 10.0617 -4.5599 -0.3544 17 1 10.0618 -5.4301 -1.5577 18 1 11.1045 -3.5128 -0.5001 19 1 10.3495 -5.3803 0.8496 20 7 5.6979 -2.5879 -0.0022 21 1 6.3434 -1.8640 -0.0023 22 6 2.1946 -1.1948 -0.0048 23 1 -0.3633 -0.0001 -1.0276 24 1 -0.3632 -0.8900 0.5139 25 1 -0.3633 0.8900 0.5139 26 1 1.6533 2.1329 -0.0004 27 1 4.1131 2.1505 -0.0009 28 1 5.3633 0.0331 -0.0014 29 1 9.0810 -1.8997 -0.2926 30 1 1.6547 -2.1302 -0.0091 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000222757739.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:38 Heat of formation + Delta-G solvation = 23.858065 kcal Electronic energy + Delta-G solvation = -16443.206620 eV Core-core repulsion = 13648.922098 eV Total energy + Delta-G solvation = -2794.284522 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.057 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.96336 -39.81439 -36.99630 -35.90996 -33.85984 -32.65391 -32.28424 -30.38523 -27.63721 -26.72741 -23.92169 -22.83667 -21.41599 -20.78132 -19.97191 -17.90999 -17.01321 -16.66419 -15.89983 -15.73744 -15.65864 -15.03385 -14.71540 -14.48890 -14.20645 -13.92528 -13.62482 -13.14105 -12.95872 -12.93608 -12.80354 -12.41017 -12.14490 -12.02181 -11.97101 -11.73942 -11.45639 -10.59028 -10.45821 -10.00586 -9.59142 -9.00091 -8.82566 -6.45360 0.18951 0.53492 1.19930 1.39112 1.52159 1.57467 1.79762 2.14694 2.28212 2.85609 3.08426 3.12533 3.91797 4.02513 4.08918 4.31542 4.51227 4.54198 4.71927 4.88754 4.90209 5.01044 5.08493 5.15480 5.34218 5.40566 5.54597 5.60838 5.73578 5.76636 6.15053 6.17823 6.39400 6.60092 7.25494 7.49288 8.09294 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.021769 B = 0.006139 C = 0.004804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.904737 B = 4560.068191 C = 5826.990435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.083 4.083 3 C -0.132 4.132 4 C -0.103 4.103 5 C -0.150 4.150 6 C 0.008 3.992 7 C 0.113 3.887 8 N -0.466 5.466 9 C -0.117 4.117 10 Cl -0.044 7.044 11 C 0.211 3.789 12 C -0.451 4.451 13 H 0.105 0.895 14 C 0.033 3.967 15 N -0.848 5.848 16 Si 1.008 2.992 17 H -0.259 1.259 18 H -0.263 1.263 19 H -0.256 1.256 20 N -0.568 5.568 21 H 0.428 0.572 22 C -0.123 4.123 23 H 0.079 0.921 24 H 0.063 0.937 25 H 0.089 0.911 26 H 0.156 0.844 27 H 0.152 0.848 28 H 0.109 0.891 29 H 0.304 0.696 30 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.978 7.527 -0.130 8.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.083 4.083 3 C -0.151 4.151 4 C -0.121 4.121 5 C -0.170 4.170 6 C 0.006 3.994 7 C -0.138 4.138 8 N -0.186 5.186 9 C -0.274 4.274 10 Cl -0.016 7.016 11 C 0.091 3.909 12 C -0.486 4.486 13 H 0.123 0.877 14 C -0.181 4.181 15 N -0.478 5.478 16 Si 0.827 3.173 17 H -0.183 1.183 18 H -0.187 1.187 19 H -0.180 1.180 20 N -0.187 5.187 21 H 0.277 0.723 22 C -0.143 4.143 23 H 0.098 0.902 24 H 0.082 0.918 25 H 0.107 0.893 26 H 0.174 0.826 27 H 0.170 0.830 28 H 0.127 0.873 29 H 0.116 0.884 30 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -4.813 7.424 -0.136 8.848 hybrid contribution 1.873 -0.461 -0.081 1.930 sum -2.940 6.963 -0.217 7.561 Atomic orbital electron populations 1.20819 0.88813 1.03651 1.03185 1.20171 0.97716 0.92127 0.98336 1.21410 0.93908 0.98147 1.01611 1.21258 0.94818 0.97368 0.98630 1.21164 0.99506 0.92145 1.04172 1.17864 0.93192 0.88286 1.00069 1.20827 0.81433 0.92502 1.19001 1.68891 1.34310 0.97941 1.17462 1.20813 0.89604 0.85349 1.31595 1.98157 1.97151 1.07982 1.98325 1.18864 0.94013 0.82105 0.95934 1.19101 0.88331 0.96707 1.44447 0.87706 1.26992 1.05839 0.94958 0.90309 1.68919 1.34957 1.06673 1.37236 0.84809 0.73579 0.78611 0.80258 1.18342 1.18748 1.18018 1.43727 1.06717 1.07763 1.60513 0.72350 1.21049 0.92122 0.98700 1.02390 0.90191 0.91816 0.89257 0.82602 0.83029 0.87271 0.88412 0.86923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.23 10.01 71.24 0.71 -1.52 16 2 C -0.08 -2.40 5.87 -19.90 -0.12 -2.51 16 3 C -0.13 -3.31 9.70 22.36 0.22 -3.10 16 4 C -0.10 -2.86 10.03 22.23 0.22 -2.64 16 5 C -0.15 -5.46 9.70 22.57 0.22 -5.24 16 6 C 0.01 0.34 5.88 -20.08 -0.12 0.22 16 7 C 0.11 5.76 7.75 136.10 1.05 6.81 16 8 N -0.47 -25.14 10.76 -177.16 -1.91 -27.04 16 9 C -0.12 -6.31 7.84 85.07 0.67 -5.65 16 10 Cl -0.04 -2.03 29.10 -2.72 -0.08 -2.11 16 11 C 0.21 11.50 6.74 38.91 0.26 11.77 16 12 C -0.45 -23.11 9.18 23.07 0.21 -22.90 16 13 H 0.10 5.16 7.81 -2.91 -0.02 5.14 16 14 C 0.03 1.53 5.49 85.30 0.47 2.00 16 15 N -0.85 -39.32 10.81 21.87 0.24 -39.08 16 16 Si 1.01 35.03 29.57 68.60 2.03 37.06 16 17 H -0.26 -8.93 7.11 99.48 0.71 -8.22 16 18 H -0.26 -8.52 7.11 99.48 0.71 -7.81 16 19 H -0.26 -8.68 7.11 99.48 0.71 -7.97 16 20 N -0.57 -29.56 5.74 -179.85 -1.03 -30.60 16 21 H 0.43 21.35 5.56 -92.71 -0.52 20.84 16 22 C -0.12 -4.63 9.34 22.57 0.21 -4.42 16 23 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 24 H 0.06 1.35 8.08 -2.39 -0.02 1.33 16 25 H 0.09 1.37 8.08 -2.39 -0.02 1.35 16 26 H 0.16 2.65 8.06 -2.91 -0.02 2.62 16 27 H 0.15 3.13 8.06 -2.91 -0.02 3.10 16 28 H 0.11 4.02 7.13 -2.91 -0.02 4.00 16 29 H 0.30 12.54 8.30 -92.71 -0.77 11.77 16 30 H 0.11 4.51 7.82 -2.91 -0.02 4.49 16 Total: -1.00 -60.77 281.86 3.92 -56.85 By element: Atomic # 1 Polarization: 31.42 SS G_CDS: 0.66 Total: 32.09 kcal Atomic # 6 Polarization: -31.18 SS G_CDS: 4.01 Total: -27.17 kcal Atomic # 7 Polarization: -94.02 SS G_CDS: -2.70 Total: -96.72 kcal Atomic # 14 Polarization: 35.03 SS G_CDS: 2.03 Total: 37.06 kcal Atomic # 17 Polarization: -2.03 SS G_CDS: -0.08 Total: -2.11 kcal Total: -60.77 3.92 -56.85 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000222757739.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.708 kcal (2) G-P(sol) polarization free energy of solvation -60.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.850 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds