Wall clock time and date at job start Mon Mar 30 2020 06:39:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.35399 * 126.15535 * 2 1 4 4 C 1.39336 * 106.63517 * 180.11648 * 3 2 1 5 5 C 1.41223 * 126.29348 * 179.83825 * 4 3 2 6 6 H 1.07995 * 120.00279 * 5.50721 * 5 4 3 7 7 C 1.39659 * 119.99799 * 185.50061 * 5 4 3 8 8 N 1.31042 * 119.99691 * 5.96055 * 7 5 4 9 9 Si 1.86799 * 119.99783 * 185.68217 * 7 5 4 10 10 H 1.48497 * 109.47217 * 265.28606 * 9 7 5 11 11 H 1.48497 * 109.47282 * 25.29041 * 9 7 5 12 12 H 1.48504 * 109.46939 * 145.29118 * 9 7 5 13 13 N 1.35097 * 107.40860 * 359.57471 * 4 3 2 14 14 C 1.31186 * 109.05003 * 0.26958 * 13 4 3 15 15 C 1.47819 * 125.38728 * 180.02562 * 14 13 4 16 16 C 1.39633 * 120.13953 * 150.82580 * 15 14 13 17 17 C 1.37935 * 119.87547 * 179.97438 * 16 15 14 18 18 C 1.38364 * 120.16070 * 359.97438 * 17 16 15 19 19 C 1.38465 * 120.28838 * 359.97438 * 18 17 16 20 20 Cl 1.73598 * 119.94334 * 180.02562 * 19 18 17 21 21 C 1.38094 * 120.11740 * 359.76767 * 19 18 17 22 22 H 1.08998 * 109.47010 * 264.77627 * 1 2 3 23 23 H 1.09002 * 109.47358 * 24.77830 * 1 2 3 24 24 H 1.09000 * 109.46841 * 144.77460 * 1 2 3 25 25 H 1.07999 * 126.68571 * 359.95505 * 3 2 1 26 26 H 0.96999 * 119.99637 * 179.71772 * 8 7 5 27 27 H 1.07997 * 120.06233 * 0.02562 * 16 15 14 28 28 H 1.07996 * 119.91329 * 179.97438 * 17 16 15 29 29 H 1.08007 * 119.85575 * 180.02562 * 18 17 16 30 30 H 1.08001 * 120.08130 * 180.27519 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2638 1.0932 0.0000 4 6 3.5771 0.6277 -0.0027 5 6 4.7453 1.4212 -0.0069 6 1 4.6691 2.4948 0.0815 7 6 5.9991 0.8174 -0.1252 8 7 6.0874 -0.4707 -0.3493 9 14 7.5498 1.8474 0.0284 10 1 8.0069 2.2585 -1.3234 11 1 7.2630 3.0557 0.8426 12 1 8.6125 1.0468 0.6879 13 7 3.5273 -0.7224 0.0053 14 6 2.2724 -1.1046 0.0069 15 6 1.8046 -2.5068 0.0155 16 6 0.5822 -2.8345 0.6054 17 6 0.1507 -4.1446 0.6099 18 6 0.9259 -5.1338 0.0311 19 6 2.1387 -4.8162 -0.5566 20 17 3.1039 -6.0643 -1.2808 21 6 2.5795 -3.5076 -0.5725 22 1 -0.3633 -0.0936 1.0234 23 1 -0.3634 0.9331 -0.4307 24 1 -0.3633 -0.8395 -0.5928 25 1 1.9452 2.1252 -0.0007 26 1 6.9582 -0.8893 -0.4356 27 1 -0.0248 -2.0634 1.0565 28 1 -0.7945 -4.3988 1.0663 29 1 0.5831 -6.1580 0.0371 30 1 3.5235 -3.2599 -1.0350 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000222758311.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:23 Heat of formation + Delta-G solvation = 57.205661 kcal Electronic energy + Delta-G solvation = -16601.340967 eV Core-core repulsion = 13808.502505 eV Total energy + Delta-G solvation = -2792.838461 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.057 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.07261 -39.87730 -37.40917 -35.60735 -33.98246 -32.80537 -31.64827 -29.80126 -28.05635 -26.36049 -23.83626 -23.56662 -21.51048 -20.75214 -18.78639 -18.00125 -17.02520 -16.49399 -16.38789 -16.18692 -15.90904 -14.77615 -14.77302 -14.46720 -14.32258 -14.10202 -13.60242 -13.43562 -12.87968 -12.71823 -12.62470 -12.49288 -12.26632 -12.22111 -11.86044 -11.77068 -11.09832 -10.26990 -10.05147 -9.85717 -9.72222 -8.69362 -8.21917 -6.07549 0.00884 0.25794 1.12796 1.35478 1.41773 1.56242 1.70387 2.31626 2.40549 2.50291 2.89456 3.60899 3.73037 3.93365 4.06551 4.16892 4.22834 4.40036 4.48472 4.54972 4.66530 4.74171 4.92682 5.18390 5.24286 5.31352 5.45202 5.55625 5.80274 5.82278 5.93577 6.39961 6.85904 7.10025 7.25748 8.05014 8.74962 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.019423 B = 0.006355 C = 0.004890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.234438 B = 4404.953451 C = 5724.051009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.451 5.451 3 C -0.196 4.196 4 C 0.143 3.857 5 C -0.494 4.494 6 H 0.079 0.921 7 C 0.024 3.976 8 N -0.819 5.819 9 Si 0.980 3.020 10 H -0.267 1.267 11 H -0.257 1.257 12 H -0.277 1.277 13 N -0.488 5.488 14 C 0.166 3.834 15 C 0.006 3.994 16 C -0.117 4.117 17 C -0.088 4.088 18 C -0.109 4.109 19 C -0.038 4.038 20 Cl -0.073 7.073 21 C -0.102 4.102 22 H 0.087 0.913 23 H 0.093 0.907 24 H 0.091 0.909 25 H 0.171 0.829 26 H 0.267 0.733 27 H 0.148 0.852 28 H 0.181 0.819 29 H 0.165 0.835 30 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.821 -7.907 1.231 15.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.138 5.138 3 C -0.326 4.326 4 C 0.016 3.984 5 C -0.529 4.529 6 H 0.097 0.903 7 C -0.189 4.189 8 N -0.447 5.447 9 Si 0.802 3.198 10 H -0.192 1.192 11 H -0.180 1.180 12 H -0.202 1.202 13 N -0.211 5.211 14 C -0.090 4.090 15 C 0.004 3.996 16 C -0.137 4.137 17 C -0.105 4.105 18 C -0.128 4.128 19 C -0.064 4.064 20 Cl -0.044 7.044 21 C -0.122 4.122 22 H 0.106 0.894 23 H 0.112 0.888 24 H 0.109 0.891 25 H 0.188 0.812 26 H 0.077 0.923 27 H 0.166 0.834 28 H 0.198 0.802 29 H 0.183 0.817 30 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -13.108 -8.676 1.126 15.759 hybrid contribution 0.757 1.159 -0.244 1.405 sum -12.350 -7.517 0.882 14.485 Atomic orbital electron populations 1.22275 0.75831 1.05103 1.03896 1.44738 1.07431 1.05157 1.56459 1.22773 0.90764 0.91727 1.27363 1.18892 0.92576 0.88664 0.98283 1.18798 0.90046 0.93763 1.50313 0.90317 1.26664 1.03386 0.96073 0.92809 1.70239 1.25427 1.11977 1.37060 0.85245 0.76891 0.78718 0.78965 1.19240 1.18041 1.20209 1.71100 1.15717 1.13365 1.20966 1.21943 0.86827 0.88643 1.11576 1.17749 0.95503 0.87401 0.98988 1.21677 0.94319 0.98853 0.98818 1.21417 1.00892 0.90398 0.97820 1.21471 0.91708 1.02165 0.97443 1.20881 0.95092 0.88462 1.01976 1.98347 1.71780 1.52147 1.82170 1.20966 0.99807 0.91515 0.99955 0.89417 0.88809 0.89082 0.81217 0.92332 0.83448 0.80166 0.81742 0.87818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.84 9.35 127.77 1.19 3.04 16 2 N -0.45 -18.98 3.15 -535.98 -1.69 -20.67 16 3 C -0.20 -9.61 11.58 84.41 0.98 -8.63 16 4 C 0.14 8.48 6.64 39.64 0.26 8.74 16 5 C -0.49 -29.48 9.37 23.35 0.22 -29.26 16 6 H 0.08 4.40 7.85 -2.91 -0.02 4.38 16 7 C 0.02 1.40 5.48 85.15 0.47 1.86 16 8 N -0.82 -50.22 11.99 21.78 0.26 -49.96 16 9 Si 0.98 43.40 29.56 68.60 2.03 45.43 16 10 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 11 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 12 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 13 N -0.49 -29.00 9.45 -181.75 -1.72 -30.72 16 14 C 0.17 8.04 7.44 136.47 1.02 9.05 16 15 C 0.01 0.23 5.76 -20.08 -0.12 0.11 16 16 C -0.12 -3.17 8.45 22.53 0.19 -2.98 16 17 C -0.09 -1.74 10.03 22.23 0.22 -1.52 16 18 C -0.11 -2.44 9.82 22.35 0.22 -2.22 16 19 C -0.04 -1.15 6.31 22.29 0.14 -1.01 16 20 Cl -0.07 -2.12 28.95 -2.72 -0.08 -2.19 16 21 C -0.10 -4.03 9.48 22.56 0.21 -3.82 16 22 H 0.09 1.84 7.49 -2.39 -0.02 1.82 16 23 H 0.09 2.09 8.13 -2.39 -0.02 2.07 16 24 H 0.09 2.06 6.96 -2.39 -0.02 2.04 16 25 H 0.17 7.26 8.06 -2.91 -0.02 7.23 16 26 H 0.27 15.15 8.30 -92.71 -0.77 14.38 16 27 H 0.15 3.29 5.62 -2.91 -0.02 3.27 16 28 H 0.18 1.85 8.06 -2.91 -0.02 1.83 16 29 H 0.17 2.54 8.06 -2.91 -0.02 2.51 16 30 H 0.10 4.93 8.05 -2.91 -0.02 4.91 16 Total: -1.00 -77.25 280.72 4.98 -72.27 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: 1.16 Total: 12.48 kcal Atomic # 6 Polarization: -31.64 SS G_CDS: 5.01 Total: -26.63 kcal Atomic # 7 Polarization: -98.21 SS G_CDS: -3.15 Total: -101.35 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal Atomic # 17 Polarization: -2.12 SS G_CDS: -0.08 Total: -2.19 kcal Total: -77.25 4.98 -72.27 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000222758311.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.478 kcal (2) G-P(sol) polarization free energy of solvation -77.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.272 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds