Wall clock time and date at job start Mon Mar 30 2020 06:18:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30923 * 1 3 3 Si 1.86800 * 120.00121 * 2 1 4 4 H 1.48497 * 109.47421 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47066 * 300.00568 * 3 2 1 6 6 H 1.48509 * 109.46756 * 60.00316 * 3 2 1 7 7 C 1.39811 * 120.00040 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99546 * 194.60418 * 7 2 1 9 9 C 1.41177 * 120.00224 * 14.59295 * 7 2 1 10 10 C 1.40854 * 120.17017 * 27.19757 * 9 7 2 11 11 C 1.36380 * 119.82150 * 179.72141 * 10 9 7 12 12 C 1.39395 * 120.17573 * 0.27650 * 11 10 9 13 13 O 1.35587 * 119.82695 * 179.97438 * 12 11 10 14 14 C 1.35533 * 117.99855 * 76.98201 * 13 12 11 15 15 N 1.29647 * 125.37669 * 355.67652 * 14 13 12 16 16 C 1.32032 * 117.08171 * 180.02562 * 15 14 13 17 17 C 1.34110 * 115.56898 * 0.02562 * 16 15 14 18 18 N 1.39773 * 125.90827 * 180.02562 * 17 16 15 19 19 S 1.76143 * 125.37434 * 175.38076 * 14 13 12 20 20 C 1.39398 * 120.35055 * 0.02562 * 12 11 10 21 21 C 1.36386 * 120.17570 * 359.95434 * 20 12 11 22 22 H 0.97002 * 120.00599 * 359.97438 * 1 2 3 23 23 H 1.08003 * 120.08974 * 0.02562 * 10 9 7 24 24 H 1.08002 * 119.91449 * 180.25851 * 11 10 9 25 25 H 1.07995 * 122.21995 * 179.97438 * 16 15 14 26 26 H 0.96997 * 120.00518 * 0.02562 * 18 17 16 27 27 H 0.97002 * 119.99527 * 180.02562 * 18 17 16 28 28 H 1.07998 * 119.91411 * 179.97438 * 20 12 11 29 29 H 1.08001 * 120.08564 * 180.02562 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3092 0.0000 0.0000 3 14 2.2433 1.6177 0.0000 4 1 3.7032 1.3464 -0.0006 5 1 1.8844 2.3965 -1.2124 6 1 1.8845 2.3964 1.2126 7 6 2.0083 -1.2108 -0.0005 8 1 3.0621 -1.2259 0.2353 9 6 1.3366 -2.4136 -0.3091 10 6 0.1984 -2.3960 -1.1386 11 6 -0.4416 -3.5629 -1.4367 12 6 0.0244 -4.7699 -0.9182 13 8 -0.6176 -5.9257 -1.2188 14 6 -0.4118 -6.4679 -2.4438 15 7 0.2910 -5.9330 -3.3929 16 6 0.3828 -6.6059 -4.5251 17 6 -0.2709 -7.7765 -4.5575 18 7 -0.3188 -8.6590 -5.6403 19 16 -1.0510 -8.0139 -2.9951 20 6 1.1465 -4.7950 -0.0914 21 6 1.7977 -3.6367 0.2157 22 1 -0.4851 0.8400 0.0004 23 1 -0.1637 -1.4617 -1.5415 24 1 -1.3120 -3.5516 -2.0760 25 1 0.9463 -6.2377 -5.3697 26 1 0.1496 -8.4443 -6.4621 27 1 -0.8205 -9.4862 -5.5699 28 1 1.5012 -5.7341 0.3068 29 1 2.6671 -3.6578 0.8560 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000226755170.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:04 Heat of formation + Delta-G solvation = 20.482320 kcal Electronic energy + Delta-G solvation = -16255.146985 eV Core-core repulsion = 13462.759787 eV Total energy + Delta-G solvation = -2792.387199 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.052 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.22349 -39.74443 -38.34901 -35.55707 -35.22445 -31.61392 -31.21063 -28.77563 -27.20737 -25.29041 -23.25620 -23.02941 -21.15768 -19.89595 -19.32608 -18.89216 -17.36806 -17.05972 -16.69823 -16.37753 -15.96255 -15.79926 -15.23211 -14.92343 -14.44946 -14.07179 -13.68819 -13.55566 -13.34028 -12.79511 -12.52754 -12.38221 -12.34735 -11.79036 -11.68219 -11.15242 -11.06400 -10.63891 -9.94119 -9.57652 -9.27185 -8.69604 -8.30602 -6.40319 -0.33074 0.07084 0.48435 0.75970 1.08309 1.39994 1.47268 1.56097 2.03535 2.19943 2.53209 2.86215 3.18487 3.68576 3.73023 4.30409 4.36720 4.40653 4.86792 4.99524 5.07772 5.15534 5.29383 5.54770 5.61133 5.98404 6.00210 6.14297 6.18306 6.47637 6.67856 6.80013 6.84235 6.94549 7.07476 8.27864 Molecular weight = 262.05amu Principal moments of inertia in cm(-1) A = 0.043312 B = 0.004321 C = 0.004183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.312990 B = 6478.840497 C = 6691.423929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.031 3.969 3 Si 0.989 3.011 4 H -0.255 1.255 5 H -0.265 1.265 6 H -0.264 1.264 7 C -0.482 4.482 8 H 0.085 0.915 9 C 0.089 3.911 10 C -0.174 4.174 11 C -0.087 4.087 12 C -0.056 4.056 13 O -0.226 6.226 14 C 0.176 3.824 15 N -0.509 5.509 16 C -0.081 4.081 17 C 0.074 3.926 18 N -0.820 5.820 19 S 0.158 5.842 20 C -0.079 4.079 21 C -0.227 4.227 22 H 0.291 0.709 23 H 0.108 0.892 24 H 0.095 0.905 25 H 0.179 0.821 26 H 0.419 0.581 27 H 0.416 0.584 28 H 0.119 0.881 29 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.262 -12.317 -8.805 15.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C -0.184 4.184 3 Si 0.809 3.191 4 H -0.178 1.178 5 H -0.190 1.190 6 H -0.188 1.188 7 C -0.511 4.511 8 H 0.103 0.897 9 C 0.086 3.914 10 C -0.194 4.194 11 C -0.106 4.106 12 C -0.101 4.101 13 O -0.131 6.131 14 C -0.141 4.141 15 N -0.239 5.239 16 C -0.232 4.232 17 C -0.151 4.151 18 N -0.369 5.369 19 S 0.400 5.600 20 C -0.098 4.098 21 C -0.247 4.247 22 H 0.102 0.898 23 H 0.126 0.874 24 H 0.113 0.887 25 H 0.196 0.804 26 H 0.253 0.747 27 H 0.247 0.753 28 H 0.137 0.863 29 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -1.993 -12.520 -8.043 15.014 hybrid contribution 0.656 1.074 -0.944 1.573 sum -1.336 -11.445 -8.987 14.613 Atomic orbital electron populations 1.69910 1.09123 1.30919 1.34633 1.26885 0.95602 1.04889 0.91046 0.85047 0.79407 0.75617 0.78983 1.17843 1.18970 1.18831 1.19911 0.97605 0.91763 1.41830 0.89685 1.18075 0.91562 0.93420 0.88302 1.20862 0.99750 0.96405 1.02376 1.20638 0.98578 0.92701 0.98713 1.18181 1.00393 0.82471 1.09087 1.84627 1.64662 1.38104 1.25733 1.26391 1.01271 0.95313 0.91104 1.66506 1.20451 1.35197 1.01702 1.21019 1.10681 0.94262 0.97222 1.23307 1.01916 0.95724 0.94159 1.41391 1.60457 1.22450 1.12556 1.84367 1.53650 1.16443 1.05563 1.20565 0.92653 0.98246 0.98287 1.20806 1.04093 0.92646 1.07152 0.89795 0.87438 0.88671 0.80373 0.74713 0.75338 0.86264 0.86716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.89 10.94 21.81 0.24 -42.65 15 2 C 0.03 1.57 5.18 85.21 0.44 2.01 15 3 Si 0.99 37.64 29.58 68.60 2.03 39.66 15 4 H -0.26 -9.43 7.11 99.48 0.71 -8.72 15 5 H -0.27 -9.74 7.11 99.48 0.71 -9.04 15 6 H -0.26 -9.56 7.11 99.48 0.71 -8.85 15 7 C -0.48 -25.86 9.04 23.37 0.21 -25.65 15 8 H 0.09 4.33 7.89 -2.91 -0.02 4.31 15 9 C 0.09 4.93 5.55 -21.28 -0.12 4.81 15 10 C -0.17 -9.64 8.61 22.48 0.19 -9.45 15 11 C -0.09 -4.52 9.72 22.11 0.22 -4.30 15 12 C -0.06 -2.75 5.38 22.83 0.12 -2.63 15 13 O -0.23 -10.13 10.02 -28.34 -0.28 -10.42 15 14 C 0.18 6.92 8.29 130.57 1.08 8.00 15 15 N -0.51 -20.67 9.86 -314.09 -3.10 -23.77 15 16 C -0.08 -2.50 11.30 83.72 0.95 -1.55 15 17 C 0.07 1.78 7.75 82.48 0.64 2.42 15 18 N -0.82 -11.05 9.14 -53.29 -0.49 -11.54 15 19 S 0.16 4.20 23.44 -56.49 -1.32 2.88 15 20 C -0.08 -3.77 9.92 22.12 0.22 -3.55 15 21 C -0.23 -11.51 9.74 22.48 0.22 -11.29 15 22 H 0.29 13.64 8.30 -92.71 -0.77 12.87 15 23 H 0.11 6.13 6.23 -2.91 -0.02 6.11 15 24 H 0.10 4.72 8.06 -2.91 -0.02 4.69 15 25 H 0.18 4.72 8.06 -2.91 -0.02 4.69 15 26 H 0.42 3.87 8.95 -92.71 -0.83 3.04 15 27 H 0.42 3.63 8.96 -92.71 -0.83 2.80 15 28 H 0.12 5.02 8.06 -2.91 -0.02 4.99 15 29 H 0.11 5.30 8.06 -2.91 -0.02 5.28 15 Total: -1.00 -65.64 277.36 0.80 -64.84 By element: Atomic # 1 Polarization: 22.62 SS G_CDS: -0.44 Total: 22.18 kcal Atomic # 6 Polarization: -45.36 SS G_CDS: 4.17 Total: -41.18 kcal Atomic # 7 Polarization: -74.61 SS G_CDS: -3.35 Total: -77.96 kcal Atomic # 8 Polarization: -10.13 SS G_CDS: -0.28 Total: -10.42 kcal Atomic # 14 Polarization: 37.64 SS G_CDS: 2.03 Total: 39.66 kcal Atomic # 16 Polarization: 4.20 SS G_CDS: -1.32 Total: 2.88 kcal Total: -65.64 0.80 -64.84 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226755170.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.319 kcal (2) G-P(sol) polarization free energy of solvation -65.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.837 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds