Wall clock time and date at job start Mon Mar 30 2020 06:19:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30500 * 1 3 3 Si 1.86798 * 120.00212 * 2 1 4 4 H 1.48502 * 109.47317 * 240.00538 * 3 2 1 5 5 H 1.48498 * 109.47046 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46945 * 120.00414 * 3 2 1 7 7 C 1.40464 * 120.00130 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00298 * 179.97438 * 7 2 1 9 9 C 1.40346 * 119.99779 * 0.02562 * 7 2 1 10 10 N 1.33332 * 126.79078 * 180.28705 * 9 7 2 11 11 C 1.33573 * 105.51126 * 180.13794 * 10 9 7 12 12 C 1.50699 * 126.07214 * 179.85199 * 11 10 9 13 13 S 1.81399 * 109.47054 * 269.71885 * 12 11 10 14 14 C 1.76197 * 103.00045 * 180.02562 * 13 12 11 15 15 C 1.38970 * 120.08093 * 359.72367 * 14 13 12 16 16 C 1.38087 * 119.91934 * 179.76253 * 15 14 13 17 17 C 1.38303 * 120.08034 * 0.49643 * 16 15 14 18 18 C 1.38296 * 120.15888 * 359.75459 * 17 16 15 19 19 C 1.38086 * 120.08414 * 0.02562 * 18 17 16 20 20 N 1.30451 * 107.85610 * 359.59220 * 11 10 9 21 21 O 1.21280 * 110.68348 * 0.26135 * 20 11 10 22 22 H 0.97002 * 120.00421 * 359.97438 * 1 2 3 23 23 H 1.09000 * 109.47247 * 149.71914 * 12 11 10 24 24 H 1.09001 * 109.47358 * 29.71340 * 12 11 10 25 25 H 1.08006 * 120.03943 * 359.97438 * 15 14 13 26 26 H 1.08000 * 119.95806 * 180.22988 * 16 15 14 27 27 H 1.07991 * 119.91836 * 179.74649 * 17 16 15 28 28 H 1.08001 * 119.96332 * 179.97438 * 18 17 16 29 29 H 1.07997 * 120.04197 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3050 0.0000 0.0000 3 14 2.2390 1.6177 0.0000 4 1 3.0927 1.6964 -1.2126 5 1 1.2741 2.7464 0.0006 6 1 3.0929 1.6962 1.2125 7 6 2.0073 -1.2164 -0.0005 8 1 3.0873 -1.2165 -0.0010 9 6 1.3056 -2.4319 -0.0016 10 7 1.8310 -3.6573 0.0031 11 6 0.7889 -4.4928 -0.0034 12 6 0.8585 -5.9982 -0.0047 13 16 0.8872 -6.6006 -1.7155 14 6 0.9672 -8.3497 -1.5185 15 6 0.9977 -8.9066 -0.2457 16 6 1.0555 -10.2781 -0.0951 17 6 1.0933 -11.0967 -1.2092 18 6 1.0684 -10.5458 -2.4774 19 6 1.0060 -9.1755 -2.6357 20 7 -0.2999 -3.7743 -0.0027 21 8 -0.0324 -2.5913 -0.0017 22 1 -0.4851 0.8400 0.0004 23 1 -0.0140 -6.4027 0.5084 24 1 1.7642 -6.3205 0.5091 25 1 0.9729 -8.2677 0.6248 26 1 1.0755 -10.7117 0.8938 27 1 1.1426 -12.1687 -1.0884 28 1 1.0984 -11.1881 -3.3452 29 1 0.9870 -8.7460 -3.6264 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000236238034.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:23 Heat of formation + Delta-G solvation = 70.273510 kcal Electronic energy + Delta-G solvation = -15873.220766 eV Core-core repulsion = 13082.992675 eV Total energy + Delta-G solvation = -2790.228091 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.052 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -43.17733 -38.89530 -34.19829 -34.16841 -31.46143 -30.96661 -30.85100 -28.23309 -26.53684 -22.81784 -22.59988 -21.73843 -20.84310 -18.18726 -17.34834 -16.36334 -15.91139 -15.50658 -15.17577 -14.92445 -14.53436 -14.00140 -13.74058 -13.46403 -13.22185 -12.69177 -12.64318 -11.66844 -11.64284 -11.59920 -11.48353 -11.20440 -10.59274 -10.22608 -10.17083 -9.96519 -9.70938 -9.51878 -9.04453 -9.02540 -8.37510 -7.20722 -7.14648 -5.10309 1.20675 1.32961 1.52763 2.58632 2.77604 2.93222 2.97339 3.28210 3.68581 3.69579 3.92794 4.75811 4.81648 4.88484 4.94813 5.04454 5.13051 5.30796 5.34111 5.47713 5.63940 5.70806 5.93548 6.27175 6.32753 6.36642 6.44141 6.78707 6.86384 7.17287 7.80173 8.00110 8.20911 8.37803 9.84171 10.22827 Molecular weight = 262.05amu Principal moments of inertia in cm(-1) A = 0.062896 B = 0.003672 C = 0.003645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 445.073599 B = 7622.465902 C = 7680.785101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.762 5.762 2 C 0.070 3.930 3 Si 0.938 3.062 4 H -0.259 1.259 5 H -0.273 1.273 6 H -0.259 1.259 7 C -0.412 4.412 8 H 0.114 0.886 9 C 0.303 3.697 10 N -0.604 5.604 11 C 0.163 3.837 12 C 0.003 3.997 13 S -0.081 6.081 14 C -0.081 4.081 15 C -0.138 4.138 16 C -0.099 4.099 17 C -0.136 4.136 18 C -0.102 4.102 19 C -0.105 4.105 20 N -0.451 5.451 21 O 0.054 5.946 22 H 0.294 0.706 23 H 0.099 0.901 24 H 0.104 0.896 25 H 0.124 0.876 26 H 0.123 0.877 27 H 0.121 0.879 28 H 0.124 0.876 29 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.559 -12.257 -1.563 12.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.389 5.389 2 C -0.156 4.156 3 Si 0.761 3.239 4 H -0.183 1.183 5 H -0.198 1.198 6 H -0.183 1.183 7 C -0.450 4.450 8 H 0.132 0.868 9 C 0.113 3.887 10 N -0.349 5.349 11 C -0.111 4.111 12 C -0.146 4.146 13 S 0.164 5.836 14 C -0.194 4.194 15 C -0.162 4.162 16 C -0.119 4.119 17 C -0.157 4.157 18 C -0.122 4.122 19 C -0.129 4.129 20 N -0.180 5.180 21 O 0.003 5.997 22 H 0.105 0.895 23 H 0.117 0.883 24 H 0.123 0.877 25 H 0.142 0.858 26 H 0.141 0.859 27 H 0.139 0.861 28 H 0.142 0.858 29 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 0.887 -11.914 -2.515 12.208 hybrid contribution 0.363 0.134 1.199 1.260 sum 1.250 -11.780 -1.316 11.919 Atomic orbital electron populations 1.69613 1.07809 1.31135 1.30308 1.26220 0.95156 1.02384 0.91796 0.85854 0.79640 0.77952 0.80485 1.18271 1.19788 1.18309 1.18571 0.95093 0.85397 1.45917 0.86789 1.24201 0.79781 0.93900 0.90798 1.72247 1.27876 0.98458 1.36304 1.23787 0.87301 0.95538 1.04471 1.21429 1.06028 0.91108 0.96084 1.86010 1.90760 0.95457 1.11386 1.22073 1.02821 0.98071 0.96439 1.21243 1.03157 0.95959 0.95842 1.21042 0.98982 0.93058 0.98834 1.21109 1.02268 0.99646 0.92644 1.21051 0.99357 0.94367 0.97426 1.20760 1.01639 0.93056 0.97445 1.74352 1.24235 0.91131 1.28319 1.85553 1.25880 1.17465 1.70759 0.89460 0.88291 0.87728 0.85785 0.85904 0.86108 0.85767 0.85563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -19.12 12.06 55.57 0.67 -18.45 15 2 C 0.07 1.67 5.50 -17.28 -0.10 1.57 15 3 Si 0.94 17.29 29.56 -169.99 -5.03 12.26 15 4 H -0.26 -4.69 7.11 56.52 0.40 -4.29 15 5 H -0.27 -4.85 7.11 56.52 0.40 -4.44 15 6 H -0.26 -4.67 7.11 56.52 0.40 -4.27 15 7 C -0.41 -10.75 9.48 -37.95 -0.36 -11.11 15 8 H 0.11 2.79 7.85 -52.49 -0.41 2.38 15 9 C 0.30 8.56 7.82 -16.35 -0.13 8.43 15 10 N -0.60 -16.49 11.61 -11.51 -0.13 -16.62 15 11 C 0.16 4.09 7.44 -156.78 -1.17 2.92 15 12 C 0.00 0.05 4.96 36.01 0.18 0.23 15 13 S -0.08 -1.48 21.91 -107.50 -2.35 -3.84 15 14 C -0.08 -1.21 6.11 -39.04 -0.24 -1.45 15 15 C -0.14 -1.87 9.36 -39.37 -0.37 -2.23 15 16 C -0.10 -1.12 10.04 -39.61 -0.40 -1.52 15 17 C -0.14 -1.40 10.04 -39.54 -0.40 -1.80 15 18 C -0.10 -1.11 10.04 -39.62 -0.40 -1.51 15 19 C -0.10 -1.37 9.79 -39.36 -0.39 -1.76 15 20 N -0.45 -12.28 12.15 31.51 0.38 -11.90 15 21 O 0.05 1.55 9.74 15.14 0.15 1.70 15 22 H 0.29 6.53 8.29 -40.82 -0.34 6.19 15 23 H 0.10 1.72 7.76 -51.92 -0.40 1.32 15 24 H 0.10 1.85 7.74 -51.92 -0.40 1.45 15 25 H 0.12 1.60 5.88 -52.48 -0.31 1.29 15 26 H 0.12 1.08 8.06 -52.49 -0.42 0.66 15 27 H 0.12 0.93 8.06 -52.49 -0.42 0.50 15 28 H 0.12 1.01 8.06 -52.49 -0.42 0.58 15 29 H 0.13 1.53 8.06 -52.49 -0.42 1.10 15 LS Contribution 278.69 15.07 4.20 4.20 Total: -1.00 -30.18 278.69 -8.22 -38.40 By element: Atomic # 1 Polarization: 4.83 SS G_CDS: -2.35 Total: 2.48 kcal Atomic # 6 Polarization: -4.47 SS G_CDS: -3.76 Total: -8.22 kcal Atomic # 7 Polarization: -47.89 SS G_CDS: 0.92 Total: -46.97 kcal Atomic # 8 Polarization: 1.55 SS G_CDS: 0.15 Total: 1.70 kcal Atomic # 14 Polarization: 17.29 SS G_CDS: -5.03 Total: 12.26 kcal Atomic # 16 Polarization: -1.48 SS G_CDS: -2.35 Total: -3.84 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -30.18 -8.22 -38.40 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236238034.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.671 kcal (2) G-P(sol) polarization free energy of solvation -30.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.397 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds