Wall clock time and date at job start Mon Mar 30 2020 06:19:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30919 * 1 3 3 Si 1.86805 * 120.00357 * 2 1 4 4 H 1.48492 * 109.46937 * 269.99845 * 3 2 1 5 5 H 1.48506 * 109.46765 * 30.00146 * 3 2 1 6 6 H 1.48499 * 109.47053 * 149.99746 * 3 2 1 7 7 C 1.39853 * 119.99974 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00306 * 163.26801 * 7 2 1 9 9 C 1.41044 * 120.00051 * 343.00424 * 7 2 1 10 10 C 1.40615 * 120.26401 * 333.84486 * 9 7 2 11 11 C 1.38062 * 119.77269 * 179.97438 * 10 9 7 12 12 S 1.76197 * 119.84692 * 179.97438 * 11 10 9 13 13 C 1.76198 * 99.99895 * 273.97801 * 12 11 10 14 14 N 1.31127 * 125.72004 * 176.48493 * 13 12 11 15 15 C 1.34654 * 108.60921 * 179.97438 * 14 13 12 16 16 C 1.34139 * 107.81452 * 0.02562 * 15 14 13 17 17 O 1.34283 * 125.72038 * 356.17645 * 13 12 11 18 18 C 1.39663 * 120.31076 * 0.02562 * 11 10 9 19 19 C 1.38004 * 120.54774 * 359.97080 * 18 11 10 20 20 C 1.38779 * 120.22206 * 359.78932 * 19 18 11 21 21 N 1.38787 * 120.16208 * 180.22851 * 20 19 18 22 22 H 0.97005 * 119.99663 * 359.97438 * 1 2 3 23 23 H 1.08004 * 120.11516 * 359.96556 * 10 9 7 24 24 H 1.07997 * 126.09168 * 180.02562 * 15 14 13 25 25 H 1.08000 * 126.36171 * 180.02562 * 16 15 14 26 26 H 1.07998 * 119.72575 * 179.97438 * 18 11 10 27 27 H 1.08004 * 119.89104 * 180.02562 * 19 18 11 28 28 H 0.96997 * 119.99950 * 180.23346 * 21 20 19 29 29 H 0.97004 * 119.99767 * 0.23671 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3092 0.0000 0.0000 3 14 2.2433 1.6177 0.0000 4 1 2.4908 2.0463 -1.4000 5 1 1.4407 2.6527 0.7001 6 1 3.5408 1.4401 0.7001 7 6 2.0085 -1.2112 0.0005 8 1 3.0542 -1.2311 -0.2687 9 6 1.3494 -2.4058 0.3581 10 6 0.2304 -2.3705 1.2088 11 6 -0.4073 -3.5460 1.5518 12 16 -1.8094 -3.5042 2.6182 13 6 -1.0035 -3.5404 4.1847 14 7 -1.5954 -3.4615 5.3521 15 6 -0.6563 -3.5238 6.3151 16 6 0.5381 -3.6432 5.7164 17 8 0.3192 -3.6594 4.3833 18 6 0.0543 -4.7683 1.0584 19 6 1.1513 -4.8181 0.2226 20 6 1.8063 -3.6497 -0.1406 21 7 2.9065 -3.7007 -0.9851 22 1 -0.4850 0.8401 0.0004 23 1 -0.1290 -1.4272 1.5927 24 1 -0.8332 -3.4845 7.3797 25 1 1.4965 -3.7180 6.2086 26 1 -0.4515 -5.6822 1.3332 27 1 1.4990 -5.7691 -0.1531 28 1 3.3646 -2.8830 -1.2347 29 1 3.2174 -4.5542 -1.3256 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000236363894.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:19 Heat of formation + Delta-G solvation = 44.571626 kcal Electronic energy + Delta-G solvation = -16686.339613 eV Core-core repulsion = 13894.997006 eV Total energy + Delta-G solvation = -2791.342608 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.052 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.60321 -37.97517 -34.18472 -33.72603 -33.35637 -29.75247 -29.66472 -27.81264 -25.28795 -22.60649 -22.09289 -21.43682 -20.59122 -18.12902 -17.44508 -16.26336 -16.04560 -15.77575 -15.69887 -14.96156 -14.72997 -13.85671 -12.97112 -12.92041 -12.73937 -12.62206 -12.24568 -11.79230 -11.34842 -11.16131 -10.97978 -10.89678 -10.58072 -10.18874 -9.85754 -9.75862 -9.42183 -9.28701 -9.21872 -7.61308 -7.05326 -6.84931 -6.62431 -4.28647 1.49587 1.85477 2.68913 2.76831 2.87807 3.05627 3.05782 3.07084 3.12669 3.90664 3.91828 4.53372 4.98478 5.17382 5.39418 5.47233 5.79691 6.03512 6.24360 6.27844 6.53843 6.76040 6.82669 7.09923 7.17451 7.36227 7.56700 7.69626 7.94648 8.02931 8.22425 8.54084 8.67912 8.84053 8.91363 10.19867 Molecular weight = 262.05amu Principal moments of inertia in cm(-1) A = 0.018168 B = 0.007430 C = 0.006256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.823192 B = 3767.729699 C = 4474.767161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.799 5.799 2 C 0.076 3.924 3 Si 0.904 3.096 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.263 1.263 7 C -0.467 4.467 8 H 0.074 0.926 9 C 0.052 3.948 10 C -0.070 4.070 11 C -0.189 4.189 12 S 0.125 5.875 13 C 0.173 3.827 14 N -0.492 5.492 15 C -0.041 4.041 16 C -0.093 4.093 17 O -0.184 6.184 18 C -0.120 4.120 19 C -0.191 4.191 20 C 0.156 3.844 21 N -0.876 5.876 22 H 0.281 0.719 23 H 0.129 0.871 24 H 0.179 0.821 25 H 0.208 0.792 26 H 0.101 0.899 27 H 0.097 0.903 28 H 0.395 0.605 29 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.357 -4.197 4.186 6.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.426 5.426 2 C -0.141 4.141 3 Si 0.729 3.271 4 H -0.196 1.196 5 H -0.201 1.201 6 H -0.187 1.187 7 C -0.497 4.497 8 H 0.092 0.908 9 C 0.045 3.955 10 C -0.094 4.094 11 C -0.304 4.304 12 S 0.363 5.637 13 C -0.139 4.139 14 N -0.225 5.225 15 C -0.181 4.181 16 C -0.169 4.169 17 O -0.071 6.071 18 C -0.143 4.143 19 C -0.216 4.216 20 C 0.052 3.948 21 N -0.415 5.415 22 H 0.092 0.908 23 H 0.147 0.853 24 H 0.196 0.804 25 H 0.224 0.776 26 H 0.119 0.881 27 H 0.115 0.885 28 H 0.224 0.776 29 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 0.232 -3.917 3.998 5.602 hybrid contribution 2.850 0.662 0.130 2.929 sum 3.083 -3.255 4.128 6.094 Atomic orbital electron populations 1.69798 1.07309 1.29259 1.36184 1.25754 0.94733 1.00956 0.92656 0.86377 0.80570 0.81109 0.79064 1.19646 1.20075 1.18698 1.19056 0.97215 0.91035 1.42443 0.90794 1.17174 0.94108 0.90628 0.93630 1.21380 0.96182 0.95567 0.96245 1.21134 1.03590 0.97310 1.08317 1.84486 1.04852 1.90494 0.83866 1.29505 0.80465 1.01387 1.02495 1.70853 1.33201 1.21561 0.96888 1.23280 0.88774 1.05873 1.00184 1.24931 1.01569 1.09583 0.80791 1.84871 1.27088 1.69344 1.25829 1.20437 0.97652 0.94850 1.01409 1.20003 1.00173 0.95342 1.06108 1.18202 0.89951 0.94091 0.92535 1.42049 1.34072 1.10012 1.55413 0.90771 0.85319 0.80387 0.77554 0.88132 0.88460 0.77576 0.79336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.23 11.02 55.54 0.61 -19.61 15 2 C 0.08 1.84 5.14 -17.34 -0.09 1.75 15 3 Si 0.90 18.26 29.59 -169.99 -5.03 13.23 15 4 H -0.27 -5.38 7.11 56.52 0.40 -4.98 15 5 H -0.28 -5.55 7.11 56.52 0.40 -5.15 15 6 H -0.26 -5.28 7.11 56.52 0.40 -4.88 15 7 C -0.47 -11.55 8.47 -37.91 -0.32 -11.88 15 8 H 0.07 1.72 6.72 -52.49 -0.35 1.36 15 9 C 0.05 1.29 5.57 -106.66 -0.59 0.69 15 10 C -0.07 -1.75 8.39 -38.75 -0.33 -2.07 15 11 C -0.19 -4.32 5.04 -39.11 -0.20 -4.51 15 12 S 0.12 2.56 22.26 -107.50 -2.39 0.17 15 13 C 0.17 3.61 8.33 52.46 0.44 4.05 15 14 N -0.49 -9.74 11.34 -13.90 -0.16 -9.90 15 15 C -0.04 -0.66 11.88 -17.76 -0.21 -0.87 15 16 C -0.09 -1.48 12.17 29.29 0.36 -1.12 15 17 O -0.18 -3.77 10.23 3.51 0.04 -3.74 15 18 C -0.12 -2.57 9.78 -39.14 -0.38 -2.95 15 19 C -0.19 -3.98 9.86 -39.47 -0.39 -4.37 15 20 C 0.16 3.47 6.79 -83.24 -0.57 2.90 15 21 N -0.88 -15.93 8.98 32.75 0.29 -15.64 15 22 H 0.28 6.57 8.30 -40.82 -0.34 6.23 15 23 H 0.13 3.43 6.25 -52.48 -0.33 3.11 15 24 H 0.18 2.10 8.06 -52.49 -0.42 1.68 15 25 H 0.21 2.28 8.06 -52.49 -0.42 1.86 15 26 H 0.10 1.93 8.06 -52.49 -0.42 1.51 15 27 H 0.10 1.75 8.06 -52.48 -0.42 1.32 15 28 H 0.40 7.04 7.06 -40.82 -0.29 6.75 15 29 H 0.38 5.67 8.83 -40.82 -0.36 5.31 15 LS Contribution 275.54 15.07 4.15 4.15 Total: -1.00 -28.69 275.54 -6.92 -35.61 By element: Atomic # 1 Polarization: 16.27 SS G_CDS: -2.16 Total: 14.12 kcal Atomic # 6 Polarization: -16.10 SS G_CDS: -2.28 Total: -18.38 kcal Atomic # 7 Polarization: -45.90 SS G_CDS: 0.75 Total: -45.15 kcal Atomic # 8 Polarization: -3.77 SS G_CDS: 0.04 Total: -3.74 kcal Atomic # 14 Polarization: 18.26 SS G_CDS: -5.03 Total: 13.23 kcal Atomic # 16 Polarization: 2.56 SS G_CDS: -2.39 Total: 0.17 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -28.69 -6.92 -35.61 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236363894.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.180 kcal (2) G-P(sol) polarization free energy of solvation -28.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.609 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds