Wall clock time and date at job start Mon Mar 30 2020 06:19:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30919 * 1 3 3 Si 1.86805 * 120.00357 * 2 1 4 4 H 1.48492 * 109.46937 * 269.99845 * 3 2 1 5 5 H 1.48506 * 109.46765 * 30.00146 * 3 2 1 6 6 H 1.48499 * 109.47053 * 149.99746 * 3 2 1 7 7 C 1.39853 * 119.99974 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00306 * 163.26801 * 7 2 1 9 9 C 1.41044 * 120.00051 * 343.00424 * 7 2 1 10 10 C 1.40615 * 120.26401 * 333.84486 * 9 7 2 11 11 C 1.38062 * 119.77269 * 179.97438 * 10 9 7 12 12 S 1.76197 * 119.84692 * 179.97438 * 11 10 9 13 13 C 1.76198 * 99.99895 * 273.97801 * 12 11 10 14 14 N 1.31127 * 125.72004 * 176.48493 * 13 12 11 15 15 C 1.34654 * 108.60921 * 179.97438 * 14 13 12 16 16 C 1.34139 * 107.81452 * 0.02562 * 15 14 13 17 17 O 1.34283 * 125.72038 * 356.17645 * 13 12 11 18 18 C 1.39663 * 120.31076 * 0.02562 * 11 10 9 19 19 C 1.38004 * 120.54774 * 359.97080 * 18 11 10 20 20 C 1.38779 * 120.22206 * 359.78932 * 19 18 11 21 21 N 1.38787 * 120.16208 * 180.22851 * 20 19 18 22 22 H 0.97005 * 119.99663 * 359.97438 * 1 2 3 23 23 H 1.08004 * 120.11516 * 359.96556 * 10 9 7 24 24 H 1.07997 * 126.09168 * 180.02562 * 15 14 13 25 25 H 1.08000 * 126.36171 * 180.02562 * 16 15 14 26 26 H 1.07998 * 119.72575 * 179.97438 * 18 11 10 27 27 H 1.08004 * 119.89104 * 180.02562 * 19 18 11 28 28 H 0.96997 * 119.99950 * 180.23346 * 21 20 19 29 29 H 0.97004 * 119.99767 * 0.23671 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3092 0.0000 0.0000 3 14 2.2433 1.6177 0.0000 4 1 2.4908 2.0463 -1.4000 5 1 1.4407 2.6527 0.7001 6 1 3.5408 1.4401 0.7001 7 6 2.0085 -1.2112 0.0005 8 1 3.0542 -1.2311 -0.2687 9 6 1.3494 -2.4058 0.3581 10 6 0.2304 -2.3705 1.2088 11 6 -0.4073 -3.5460 1.5518 12 16 -1.8094 -3.5042 2.6182 13 6 -1.0035 -3.5404 4.1847 14 7 -1.5954 -3.4615 5.3521 15 6 -0.6563 -3.5238 6.3151 16 6 0.5381 -3.6432 5.7164 17 8 0.3192 -3.6594 4.3833 18 6 0.0543 -4.7683 1.0584 19 6 1.1513 -4.8181 0.2226 20 6 1.8063 -3.6497 -0.1406 21 7 2.9065 -3.7007 -0.9851 22 1 -0.4850 0.8401 0.0004 23 1 -0.1290 -1.4272 1.5927 24 1 -0.8332 -3.4845 7.3797 25 1 1.4965 -3.7180 6.2086 26 1 -0.4515 -5.6822 1.3332 27 1 1.4990 -5.7691 -0.1531 28 1 3.3646 -2.8830 -1.2347 29 1 3.2174 -4.5542 -1.3256 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000236363894.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:19 Heat of formation + Delta-G solvation = 24.371622 kcal Electronic energy + Delta-G solvation = -16687.215551 eV Core-core repulsion = 13894.997006 eV Total energy + Delta-G solvation = -2792.218546 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.052 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -44.02962 -39.68513 -35.65269 -35.49009 -34.98310 -31.52335 -31.02154 -29.47837 -27.06913 -24.08572 -23.44679 -23.18618 -22.27480 -19.66576 -19.11227 -17.90967 -17.56904 -17.39186 -17.20391 -16.54248 -16.21241 -15.32902 -14.66391 -14.58546 -14.31462 -14.02413 -13.96996 -13.43468 -13.01257 -12.81449 -12.63094 -12.44293 -12.21367 -11.64913 -11.56371 -11.45816 -11.06247 -10.99359 -10.67885 -9.39532 -8.65402 -8.53180 -8.29151 -6.12052 -0.05305 0.44861 0.98060 1.11141 1.22203 1.40050 1.48123 1.53314 1.69305 2.23249 2.53870 2.78198 3.47131 3.67503 3.95975 4.13900 4.40997 4.55431 4.60350 4.97173 5.02235 5.10448 5.27918 5.30902 5.45385 5.63664 5.84156 5.93122 6.19840 6.45127 6.62832 6.82137 6.94227 7.12640 7.40561 8.44124 Molecular weight = 262.05amu Principal moments of inertia in cm(-1) A = 0.018168 B = 0.007430 C = 0.006256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.823192 B = 3767.729699 C = 4474.767161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.837 5.837 2 C 0.033 3.967 3 Si 0.972 3.028 4 H -0.263 1.263 5 H -0.277 1.277 6 H -0.260 1.260 7 C -0.492 4.492 8 H 0.081 0.919 9 C 0.016 3.984 10 C -0.093 4.093 11 C -0.203 4.203 12 S 0.129 5.871 13 C 0.142 3.858 14 N -0.505 5.505 15 C -0.049 4.049 16 C -0.084 4.084 17 O -0.210 6.210 18 C -0.114 4.114 19 C -0.197 4.197 20 C 0.158 3.842 21 N -0.861 5.861 22 H 0.283 0.717 23 H 0.101 0.899 24 H 0.221 0.779 25 H 0.255 0.745 26 H 0.124 0.876 27 H 0.132 0.868 28 H 0.398 0.602 29 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.733 -5.148 4.986 8.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.465 5.465 2 C -0.179 4.179 3 Si 0.794 3.206 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.184 1.184 7 C -0.523 4.523 8 H 0.099 0.901 9 C 0.009 3.991 10 C -0.118 4.118 11 C -0.318 4.318 12 S 0.366 5.634 13 C -0.169 4.169 14 N -0.240 5.240 15 C -0.188 4.188 16 C -0.158 4.158 17 O -0.097 6.097 18 C -0.136 4.136 19 C -0.222 4.222 20 C 0.052 3.948 21 N -0.402 5.402 22 H 0.093 0.907 23 H 0.119 0.881 24 H 0.238 0.762 25 H 0.270 0.730 26 H 0.142 0.858 27 H 0.150 0.850 28 H 0.227 0.773 29 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 1.648 -4.897 4.767 7.030 hybrid contribution 2.441 0.810 0.016 2.572 sum 4.089 -4.087 4.783 7.503 Atomic orbital electron populations 1.69895 1.08770 1.29968 1.37838 1.26541 0.95339 1.04012 0.92052 0.85353 0.79078 0.76933 0.79262 1.18733 1.20237 1.18354 1.19329 0.97662 0.91780 1.43565 0.90066 1.17503 0.94883 0.92058 0.94613 1.21204 0.97538 0.95317 0.97710 1.21264 1.04262 0.97192 1.09056 1.84188 1.04086 1.91073 0.84004 1.29321 0.80956 1.04096 1.02572 1.70821 1.34605 1.21150 0.97398 1.23994 0.88046 1.05284 1.01499 1.25955 1.03609 1.07077 0.79145 1.84854 1.26981 1.69576 1.28322 1.20825 0.97443 0.95114 1.00259 1.20375 0.99767 0.96355 1.05715 1.18368 0.90495 0.93643 0.92309 1.41972 1.32710 1.11298 1.54175 0.90693 0.88091 0.76233 0.72952 0.85833 0.84973 0.77285 0.77134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -44.10 11.02 21.81 0.24 -43.86 15 2 C 0.03 1.66 5.14 85.22 0.44 2.10 15 3 Si 0.97 38.02 29.59 68.60 2.03 40.05 15 4 H -0.26 -9.81 7.11 99.48 0.71 -9.10 15 5 H -0.28 -10.77 7.11 99.48 0.71 -10.07 15 6 H -0.26 -9.89 7.11 99.48 0.71 -9.18 15 7 C -0.49 -24.82 8.47 23.35 0.20 -24.62 15 8 H 0.08 3.79 6.72 -2.91 -0.02 3.77 15 9 C 0.02 0.82 5.57 -21.18 -0.12 0.71 15 10 C -0.09 -4.86 8.39 22.81 0.19 -4.67 15 11 C -0.20 -9.42 5.04 22.57 0.11 -9.31 15 12 S 0.13 5.39 22.26 -56.49 -1.26 4.13 15 13 C 0.14 5.92 8.33 130.35 1.09 7.01 15 14 N -0.51 -19.57 11.34 -312.08 -3.54 -23.11 15 15 C -0.05 -1.44 11.88 83.32 0.99 -0.45 15 16 C -0.08 -2.45 12.17 66.88 0.81 -1.64 15 17 O -0.21 -8.47 10.23 -10.37 -0.11 -8.58 15 18 C -0.11 -4.74 9.78 22.56 0.22 -4.52 15 19 C -0.20 -7.84 9.86 22.34 0.22 -7.61 15 20 C 0.16 6.87 6.79 39.00 0.26 7.13 15 21 N -0.86 -29.83 8.98 -50.31 -0.45 -30.28 15 22 H 0.28 13.80 8.30 -92.70 -0.77 13.03 15 23 H 0.10 5.72 6.25 -2.91 -0.02 5.71 15 24 H 0.22 4.33 8.06 -2.91 -0.02 4.30 15 25 H 0.25 4.54 8.06 -2.91 -0.02 4.51 15 26 H 0.12 4.51 8.06 -2.91 -0.02 4.48 15 27 H 0.13 4.27 8.06 -2.91 -0.02 4.25 15 28 H 0.40 13.65 7.06 -92.71 -0.65 13.00 15 29 H 0.40 10.81 8.83 -92.70 -0.82 9.99 15 Total: -1.00 -63.92 275.54 1.08 -62.84 By element: Atomic # 1 Polarization: 34.94 SS G_CDS: -0.25 Total: 34.69 kcal Atomic # 6 Polarization: -40.31 SS G_CDS: 4.42 Total: -35.89 kcal Atomic # 7 Polarization: -93.50 SS G_CDS: -3.75 Total: -97.25 kcal Atomic # 8 Polarization: -8.47 SS G_CDS: -0.11 Total: -8.58 kcal Atomic # 14 Polarization: 38.02 SS G_CDS: 2.03 Total: 40.05 kcal Atomic # 16 Polarization: 5.39 SS G_CDS: -1.26 Total: 4.13 kcal Total: -63.92 1.08 -62.84 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236363894.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.215 kcal (2) G-P(sol) polarization free energy of solvation -63.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.843 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds