Wall clock time and date at job start Mon Mar 30 2020 06:36:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.32217 * 125.83873 * 2 1 4 4 C 1.33198 * 109.68315 * 179.97438 * 3 2 1 5 5 C 1.39598 * 125.69576 * 180.02562 * 4 3 2 6 6 H 1.07993 * 120.00051 * 179.97438 * 5 4 3 7 7 C 1.40232 * 119.99911 * 359.97438 * 5 4 3 8 8 N 1.30690 * 120.00247 * 359.97438 * 7 5 4 9 9 Si 1.86805 * 119.99946 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47316 * 59.99334 * 9 7 5 11 11 H 1.48498 * 109.47424 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.46911 * 299.99716 * 9 7 5 13 13 N 1.37639 * 108.60364 * 359.73713 * 4 3 2 14 14 H 0.96994 * 126.62058 * 180.26845 * 13 4 3 15 15 C 1.37513 * 106.76960 * 0.42455 * 13 4 3 16 16 C 1.47279 * 126.68740 * 179.85137 * 15 13 4 17 17 C 1.39948 * 120.15658 * 314.68445 * 16 15 13 18 18 C 1.37805 * 119.83326 * 179.97438 * 17 16 15 19 19 C 1.38587 * 120.16340 * 359.97438 * 18 17 16 20 20 Cl 1.73605 * 119.83869 * 179.97438 * 19 18 17 21 21 C 1.38592 * 120.32498 * 0.02562 * 19 18 17 22 22 C 1.37805 * 120.16452 * 359.97438 * 21 19 18 23 23 H 1.09004 * 109.46697 * 270.03362 * 1 2 3 24 24 H 1.08991 * 109.47493 * 30.03774 * 1 2 3 25 25 H 1.08999 * 109.47144 * 150.04327 * 1 2 3 26 26 H 0.97004 * 120.00241 * 179.97438 * 8 7 5 27 27 H 1.08003 * 120.08617 * 359.95819 * 17 16 15 28 28 H 1.08002 * 119.91889 * 179.71937 * 18 17 16 29 29 H 1.08000 * 119.91774 * 179.97438 * 21 19 18 30 30 H 1.07999 * 120.08308 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2811 1.0718 0.0000 4 6 3.5605 0.7012 0.0006 5 6 4.6583 1.5635 0.0012 6 1 5.6607 1.1616 0.0021 7 6 4.4596 2.9517 0.0008 8 7 3.2466 3.4381 -0.0007 9 14 5.9286 4.1056 0.0010 10 1 6.7508 3.8605 -1.2111 11 1 5.4531 5.5124 0.0011 12 1 6.7499 3.8611 1.2139 13 7 3.6193 -0.6739 0.0069 14 1 4.4218 -1.2187 0.0124 15 6 2.3208 -1.1266 0.0005 16 6 1.8787 -2.5314 0.0007 17 6 2.4842 -3.4591 -0.8545 18 6 2.0657 -4.7721 -0.8485 19 6 1.0482 -5.1747 0.0020 20 17 0.5271 -6.8307 0.0022 21 6 0.4440 -4.2616 0.8517 22 6 0.8519 -2.9453 0.8567 23 1 -0.3633 0.0006 1.0277 24 1 -0.3634 0.8895 -0.5144 25 1 -0.3633 -0.8904 -0.5132 26 1 3.1091 4.3984 -0.0006 27 1 3.2773 -3.1468 -1.5178 28 1 2.5289 -5.4882 -1.5111 29 1 -0.3486 -4.5824 1.5114 30 1 0.3805 -2.2350 1.5197 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258756021.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:45 Heat of formation + Delta-G solvation = 37.008060 kcal Electronic energy + Delta-G solvation = -16361.069626 eV Core-core repulsion = 13567.355331 eV Total energy + Delta-G solvation = -2793.714295 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.057 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.78485 -39.79249 -37.34525 -35.43188 -33.57650 -32.78070 -31.94394 -30.06590 -29.02842 -26.04215 -23.63546 -23.14943 -21.83791 -20.32150 -19.29494 -17.95914 -17.43212 -16.61395 -16.23852 -15.85626 -15.26941 -14.83462 -14.62771 -14.41593 -14.31097 -13.63322 -13.50085 -13.27303 -13.01820 -12.83100 -12.59967 -12.46580 -12.37456 -12.25960 -11.94216 -11.70699 -11.13641 -10.20341 -10.01294 -9.96713 -9.64053 -8.64181 -8.38835 -6.29747 0.03931 0.39392 1.20485 1.36699 1.44436 1.57388 1.74357 2.25067 2.59065 2.75639 3.02323 3.55755 3.90914 3.97874 4.16235 4.32652 4.39697 4.49899 4.62211 4.76731 4.93987 5.02775 5.09963 5.16151 5.28606 5.33040 5.37691 5.56867 5.79088 5.87517 6.06487 6.25963 6.60960 6.93892 7.44670 8.19930 8.55104 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.048514 B = 0.004165 C = 0.003909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.015451 B = 6720.994804 C = 7160.789890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 C 0.019 3.981 3 N -0.550 5.550 4 C 0.354 3.646 5 C -0.490 4.490 6 H 0.092 0.908 7 C 0.035 3.965 8 N -0.781 5.781 9 Si 0.996 3.004 10 H -0.259 1.259 11 H -0.272 1.272 12 H -0.259 1.259 13 N -0.611 5.611 14 H 0.408 0.592 15 C -0.124 4.124 16 C 0.026 3.974 17 C -0.127 4.127 18 C -0.098 4.098 19 C -0.060 4.060 20 Cl -0.071 7.071 21 C -0.096 4.096 22 C -0.112 4.112 23 H 0.070 0.930 24 H 0.051 0.949 25 H 0.074 0.926 26 H 0.279 0.721 27 H 0.124 0.876 28 H 0.149 0.851 29 H 0.154 0.846 30 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.517 -12.958 0.217 13.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.118 4.118 3 N -0.273 5.273 4 C 0.111 3.889 5 C -0.529 4.529 6 H 0.110 0.890 7 C -0.186 4.186 8 N -0.406 5.406 9 Si 0.816 3.184 10 H -0.183 1.183 11 H -0.197 1.197 12 H -0.183 1.183 13 N -0.220 5.220 14 H 0.245 0.755 15 C -0.236 4.236 16 C 0.024 3.976 17 C -0.146 4.146 18 C -0.117 4.117 19 C -0.087 4.087 20 Cl -0.042 7.042 21 C -0.115 4.115 22 C -0.131 4.131 23 H 0.089 0.911 24 H 0.070 0.930 25 H 0.093 0.907 26 H 0.089 0.911 27 H 0.142 0.858 28 H 0.167 0.833 29 H 0.171 0.829 30 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -3.062 -12.122 0.215 12.504 hybrid contribution 1.243 -0.431 -0.073 1.317 sum -1.819 -12.553 0.141 12.684 Atomic orbital electron populations 1.19966 0.87627 1.01616 1.01760 1.21904 0.96941 0.88849 1.04139 1.70947 1.00089 1.27767 1.28463 1.20401 0.93393 0.79523 0.95590 1.18572 0.91872 0.91148 1.51331 0.88989 1.26761 0.99798 0.99850 0.92214 1.70127 1.23838 1.14399 1.32227 0.85069 0.77161 0.76241 0.79938 1.18301 1.19666 1.18321 1.43258 1.06526 1.07269 1.64953 0.75546 1.19408 0.84656 0.92684 1.26802 1.18145 0.95599 0.88979 0.94868 1.21296 1.01343 0.92735 0.99231 1.21040 0.96161 0.95832 0.98657 1.21020 0.99954 0.86023 1.01658 1.98344 1.90072 1.17763 1.98038 1.21104 1.00173 0.91632 0.98555 1.21291 0.97647 0.95647 0.98478 0.91139 0.92969 0.90699 0.91062 0.85849 0.83309 0.82861 0.84930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -2.01 9.23 71.24 0.66 -1.35 16 2 C 0.02 0.92 7.13 42.68 0.30 1.23 16 3 N -0.55 -31.58 9.32 -180.63 -1.68 -33.26 16 4 C 0.35 19.50 7.58 133.40 1.01 20.51 16 5 C -0.49 -26.23 9.44 23.08 0.22 -26.01 16 6 H 0.09 4.46 7.85 -2.91 -0.02 4.44 16 7 C 0.03 1.77 5.50 85.35 0.47 2.24 16 8 N -0.78 -43.39 11.87 21.88 0.26 -43.13 16 9 Si 1.00 38.16 29.56 68.60 2.03 40.18 16 10 H -0.26 -9.49 7.11 99.48 0.71 -8.78 16 11 H -0.27 -10.05 7.11 99.48 0.71 -9.34 16 12 H -0.26 -9.50 7.11 99.48 0.71 -8.79 16 13 N -0.61 -28.38 6.31 -180.41 -1.14 -29.52 16 14 H 0.41 16.27 8.96 -92.71 -0.83 15.44 16 15 C -0.12 -5.49 6.71 40.81 0.27 -5.21 16 16 C 0.03 0.91 5.60 -20.07 -0.11 0.79 16 17 C -0.13 -3.86 9.80 22.58 0.22 -3.64 16 18 C -0.10 -2.48 9.81 22.25 0.22 -2.26 16 19 C -0.06 -1.46 6.33 22.44 0.14 -1.32 16 20 Cl -0.07 -1.49 28.95 -2.72 -0.08 -1.57 16 21 C -0.10 -2.38 9.81 22.25 0.22 -2.16 16 22 C -0.11 -3.33 8.75 22.58 0.20 -3.14 16 23 H 0.07 2.44 8.14 -2.38 -0.02 2.42 16 24 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 25 H 0.07 2.49 7.54 -2.39 -0.02 2.47 16 26 H 0.28 14.10 8.29 -92.71 -0.77 13.34 16 27 H 0.12 3.68 8.06 -2.91 -0.02 3.65 16 28 H 0.15 3.02 8.06 -2.91 -0.02 2.99 16 29 H 0.15 2.97 8.06 -2.91 -0.02 2.95 16 30 H 0.13 3.88 7.51 -2.91 -0.02 3.85 16 Total: -1.00 -64.48 283.61 3.55 -60.93 By element: Atomic # 1 Polarization: 26.34 SS G_CDS: 0.35 Total: 26.69 kcal Atomic # 6 Polarization: -24.14 SS G_CDS: 3.82 Total: -20.32 kcal Atomic # 7 Polarization: -103.35 SS G_CDS: -2.56 Total: -105.91 kcal Atomic # 14 Polarization: 38.16 SS G_CDS: 2.03 Total: 40.18 kcal Atomic # 17 Polarization: -1.49 SS G_CDS: -0.08 Total: -1.57 kcal Total: -64.48 3.55 -60.93 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258756021.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.938 kcal (2) G-P(sol) polarization free energy of solvation -64.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.930 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds