Wall clock time and date at job start Mon Mar 30 2020 06:36:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.32216 * 125.84051 * 2 1 4 4 C 1.33192 * 109.67825 * 179.78229 * 3 2 1 5 5 C 1.39606 * 125.69388 * 180.25166 * 4 3 2 6 6 H 1.08003 * 119.99789 * 180.18368 * 5 4 3 7 7 C 1.40246 * 120.00391 * 0.18172 * 5 4 3 8 8 N 1.30680 * 120.00058 * 0.02562 * 7 5 4 9 9 Si 1.86809 * 120.00014 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.46810 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.47015 * 120.00005 * 9 7 5 12 12 H 1.48498 * 109.46968 * 240.00161 * 9 7 5 13 13 N 1.37623 * 108.60283 * 0.40921 * 4 3 2 14 14 H 0.97001 * 126.61559 * 179.87004 * 13 4 3 15 15 C 1.37499 * 106.77304 * 359.59853 * 13 4 3 16 16 C 1.47310 * 126.68479 * 180.26359 * 15 13 4 17 17 C 1.39950 * 120.16525 * 224.70697 * 16 15 13 18 18 C 1.37831 * 119.84372 * 179.69995 * 17 16 15 19 19 C 1.38450 * 120.19334 * 0.57245 * 18 17 16 20 20 C 1.38548 * 120.34110 * 359.71970 * 19 18 17 21 21 Cl 1.73597 * 119.92824 * 179.97438 * 20 19 18 22 22 C 1.37991 * 120.14596 * 359.97438 * 20 19 18 23 23 H 1.09005 * 109.47139 * 269.95961 * 1 2 3 24 24 H 1.08999 * 109.47604 * 29.95818 * 1 2 3 25 25 H 1.09002 * 109.47439 * 149.95809 * 1 2 3 26 26 H 0.97004 * 120.00188 * 180.02562 * 8 7 5 27 27 H 1.07999 * 120.07631 * 359.97438 * 17 16 15 28 28 H 1.08004 * 119.90406 * 180.27431 * 18 17 16 29 29 H 1.07996 * 119.83306 * 179.70294 * 19 18 17 30 30 H 1.08001 * 120.09766 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2811 1.0718 0.0000 4 6 3.5604 0.7011 0.0048 5 6 4.6583 1.5633 0.0112 6 1 5.6607 1.1612 0.0117 7 6 4.4597 2.9516 0.0170 8 7 3.2469 3.4382 0.0168 9 14 5.9290 4.1053 0.0249 10 1 7.1830 3.3098 0.0231 11 1 5.8882 4.9670 -1.1839 12 1 5.8836 4.9562 1.2411 13 7 3.6191 -0.6739 -0.0013 14 1 4.4216 -1.2188 -0.0015 15 6 2.3207 -1.1264 -0.0008 16 6 1.8784 -2.5316 -0.0006 17 6 0.8467 -2.9443 -0.8513 18 6 0.4424 -4.2619 -0.8502 19 6 1.0458 -5.1747 -0.0018 20 6 2.0638 -4.7734 0.8480 21 17 2.8124 -5.9267 1.9077 22 6 2.4839 -3.4590 0.8539 23 1 -0.3634 -0.0007 1.0277 24 1 -0.3634 0.8903 -0.5132 25 1 -0.3634 -0.8896 -0.5145 26 1 3.1095 4.3985 0.0204 27 1 0.3714 -2.2328 -1.5104 28 1 -0.3508 -4.5824 -1.5095 29 1 0.7211 -6.2047 -0.0023 30 1 3.2778 -3.1472 1.5164 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258806190.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:47 Heat of formation + Delta-G solvation = 38.226917 kcal Electronic energy + Delta-G solvation = -16426.384677 eV Core-core repulsion = 13632.723235 eV Total energy + Delta-G solvation = -2793.661441 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.057 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.80529 -39.79249 -37.40347 -35.45106 -33.59189 -32.96359 -31.63590 -30.16613 -29.03406 -26.16658 -23.52486 -23.17247 -21.86457 -20.35756 -19.34496 -17.87487 -17.33156 -16.58784 -16.35457 -16.00233 -15.28271 -14.87324 -14.67128 -14.40087 -14.34744 -13.61848 -13.52715 -13.17741 -13.05832 -12.87626 -12.57819 -12.46514 -12.39584 -12.08624 -11.89365 -11.80926 -11.18677 -10.28615 -10.07001 -9.78102 -9.68325 -8.66895 -8.40302 -6.31046 0.12492 0.30114 1.13111 1.34542 1.43620 1.59223 1.74600 2.24204 2.58398 2.76275 3.00969 3.54421 3.93780 3.99039 4.21666 4.31657 4.38345 4.46446 4.63352 4.76606 4.95409 5.00907 5.09151 5.17322 5.27909 5.36959 5.41926 5.57171 5.78351 5.90079 6.05810 6.24986 6.59784 6.92944 7.42332 8.18380 8.54231 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.030110 B = 0.004833 C = 0.004305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.703497 B = 5792.690133 C = 6502.723116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.021 3.979 3 N -0.549 5.549 4 C 0.354 3.646 5 C -0.489 4.489 6 H 0.090 0.910 7 C 0.034 3.966 8 N -0.781 5.781 9 Si 0.996 3.004 10 H -0.254 1.254 11 H -0.268 1.268 12 H -0.269 1.269 13 N -0.613 5.613 14 H 0.406 0.594 15 C -0.126 4.126 16 C 0.033 3.967 17 C -0.123 4.123 18 C -0.087 4.087 19 C -0.128 4.128 20 C -0.031 4.031 21 Cl -0.075 7.075 22 C -0.138 4.138 23 H 0.060 0.940 24 H 0.056 0.944 25 H 0.086 0.914 26 H 0.279 0.721 27 H 0.134 0.866 28 H 0.168 0.832 29 H 0.157 0.843 30 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.220 -13.255 -0.764 13.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.117 4.117 3 N -0.271 5.271 4 C 0.111 3.889 5 C -0.528 4.528 6 H 0.109 0.891 7 C -0.186 4.186 8 N -0.406 5.406 9 Si 0.816 3.184 10 H -0.177 1.177 11 H -0.192 1.192 12 H -0.193 1.193 13 N -0.221 5.221 14 H 0.243 0.757 15 C -0.237 4.237 16 C 0.031 3.969 17 C -0.142 4.142 18 C -0.105 4.105 19 C -0.147 4.147 20 C -0.057 4.057 21 Cl -0.046 7.046 22 C -0.158 4.158 23 H 0.079 0.921 24 H 0.075 0.925 25 H 0.105 0.895 26 H 0.090 0.910 27 H 0.152 0.848 28 H 0.186 0.814 29 H 0.174 0.826 30 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -3.640 -12.377 -0.668 12.918 hybrid contribution 1.535 -0.309 0.351 1.605 sum -2.105 -12.686 -0.317 12.863 Atomic orbital electron populations 1.20079 0.87527 1.02301 1.01617 1.21899 0.96996 0.88727 1.04036 1.70950 1.00033 1.27719 1.28434 1.20420 0.93460 0.79459 0.95605 1.18614 0.91781 0.91146 1.51233 0.89144 1.26763 0.99824 0.99827 0.92205 1.70132 1.23788 1.14339 1.32312 0.84963 0.77482 0.77324 0.78607 1.17708 1.19247 1.19349 1.43281 1.06546 1.07347 1.64940 0.75711 1.19392 0.84660 0.92655 1.27004 1.17943 0.95715 0.88516 0.94740 1.21549 0.97259 0.97107 0.98262 1.21347 0.99624 0.91373 0.98136 1.21350 0.95597 1.01765 0.95997 1.20866 0.98337 0.89833 0.96664 1.98345 1.81828 1.59256 1.65198 1.21111 1.02232 0.92010 1.00401 0.92129 0.92542 0.89512 0.91042 0.84841 0.81422 0.82569 0.86990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.23 10.22 71.24 0.73 -1.51 16 2 C 0.02 1.02 7.13 42.67 0.30 1.33 16 3 N -0.55 -31.80 9.32 -180.65 -1.68 -33.48 16 4 C 0.35 19.76 7.58 133.40 1.01 20.77 16 5 C -0.49 -26.50 9.44 23.09 0.22 -26.28 16 6 H 0.09 4.49 7.85 -2.91 -0.02 4.47 16 7 C 0.03 1.79 5.50 85.35 0.47 2.26 16 8 N -0.78 -43.63 11.87 21.88 0.26 -43.37 16 9 Si 1.00 38.61 29.56 68.60 2.03 40.64 16 10 H -0.25 -9.32 7.11 99.48 0.71 -8.61 16 11 H -0.27 -10.01 7.11 99.48 0.71 -9.30 16 12 H -0.27 -10.08 7.11 99.48 0.71 -9.38 16 13 N -0.61 -29.23 6.31 -180.41 -1.14 -30.37 16 14 H 0.41 16.94 8.96 -92.71 -0.83 16.11 16 15 C -0.13 -5.68 6.72 40.82 0.27 -5.41 16 16 C 0.03 1.18 5.72 -20.08 -0.11 1.06 16 17 C -0.12 -3.55 8.60 22.59 0.19 -3.36 16 18 C -0.09 -1.88 10.03 22.22 0.22 -1.66 16 19 C -0.13 -2.85 9.83 22.39 0.22 -2.63 16 20 C -0.03 -0.83 6.31 22.29 0.14 -0.69 16 21 Cl -0.08 -1.84 28.95 -2.72 -0.08 -1.92 16 22 C -0.14 -4.55 9.58 22.61 0.22 -4.33 16 23 H 0.06 2.22 8.14 -2.38 -0.02 2.20 16 24 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 25 H 0.09 2.73 5.31 -2.39 -0.01 2.72 16 26 H 0.28 14.10 8.29 -92.71 -0.77 13.33 16 27 H 0.13 3.72 6.58 -2.91 -0.02 3.70 16 28 H 0.17 2.31 8.06 -2.91 -0.02 2.29 16 29 H 0.16 2.52 8.06 -2.91 -0.02 2.49 16 30 H 0.11 3.87 8.06 -2.91 -0.02 3.84 16 Total: -1.00 -66.52 281.42 3.63 -62.89 By element: Atomic # 1 Polarization: 25.70 SS G_CDS: 0.36 Total: 26.06 kcal Atomic # 6 Polarization: -24.33 SS G_CDS: 3.88 Total: -20.44 kcal Atomic # 7 Polarization: -104.66 SS G_CDS: -2.56 Total: -107.22 kcal Atomic # 14 Polarization: 38.61 SS G_CDS: 2.03 Total: 40.64 kcal Atomic # 17 Polarization: -1.84 SS G_CDS: -0.08 Total: -1.92 kcal Total: -66.52 3.63 -62.89 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258806190.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.117 kcal (2) G-P(sol) polarization free energy of solvation -66.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.890 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds