Wall clock time and date at job start Mon Mar 30 2020 06:35:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38088 * 120.03264 * 2 1 4 4 C 1.38401 * 120.06348 * 180.02562 * 3 2 1 5 5 Cl 1.73607 * 119.93287 * 179.97438 * 4 3 2 6 6 C 1.38450 * 120.13316 * 359.97438 * 4 3 2 7 7 C 1.38042 * 120.06002 * 359.75205 * 6 4 3 8 8 C 1.38945 * 120.03562 * 180.02562 * 2 1 3 9 9 N 1.39835 * 120.06370 * 359.94838 * 8 2 1 10 10 C 1.36203 * 125.42470 * 135.29860 * 9 8 2 11 11 C 1.34657 * 108.44857 * 180.27021 * 10 9 8 12 12 C 1.46372 * 107.15325 * 359.97438 * 11 10 9 13 13 C 1.41258 * 126.49449 * 179.97438 * 12 11 10 14 14 H 1.08002 * 119.99664 * 353.93137 * 13 12 11 15 15 C 1.39876 * 120.00488 * 173.93352 * 13 12 11 16 16 N 1.30878 * 120.00017 * 169.83428 * 15 13 12 17 17 Si 1.86803 * 119.99610 * 349.83247 * 15 13 12 18 18 H 1.48494 * 109.46921 * 84.82860 * 17 15 13 19 19 H 1.48500 * 109.46782 * 204.82712 * 17 15 13 20 20 H 1.48503 * 109.47234 * 324.82388 * 17 15 13 21 21 N 1.33023 * 107.01841 * 0.02562 * 12 11 10 22 22 H 1.09003 * 109.47051 * 270.35038 * 1 2 3 23 23 H 1.09003 * 109.47094 * 30.35615 * 1 2 3 24 24 H 1.09003 * 109.46971 * 150.35406 * 1 2 3 25 25 H 1.08005 * 119.96782 * 359.97438 * 3 2 1 26 26 H 1.08002 * 119.96731 * 180.02562 * 6 4 3 27 27 H 1.08002 * 120.02752 * 180.25408 * 7 6 4 28 28 H 1.07993 * 125.77823 * 0.27020 * 10 9 8 29 29 H 1.08002 * 126.42204 * 180.02562 * 11 10 9 30 30 H 0.96998 * 119.99815 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1955 0.0000 4 6 3.5821 1.1962 -0.0005 5 17 4.4476 2.7012 -0.0012 6 6 4.2778 -0.0008 -0.0005 7 6 3.5923 -1.1990 0.0052 8 6 2.2025 -1.2029 -0.0005 9 7 1.5054 -2.4151 0.0000 10 6 1.7951 -3.4927 -0.7809 11 6 0.9074 -4.4678 -0.5080 12 6 0.0020 -3.9519 0.5199 13 6 -1.0847 -4.6397 1.1043 14 1 -1.3737 -5.6104 0.7295 15 6 -1.7864 -4.0635 2.1683 16 7 -2.9075 -4.5994 2.5794 17 14 -1.1233 -2.5293 3.0026 18 1 -1.5584 -1.3276 2.2466 19 1 -1.6449 -2.4563 4.3911 20 1 0.3603 -2.5845 3.0334 21 7 0.3955 -2.7122 0.7988 22 1 -0.3633 0.0063 1.0277 23 1 -0.3633 0.8868 -0.5194 24 1 -0.3633 -0.8932 -0.5083 25 1 1.6581 2.1308 -0.0004 26 1 5.3578 0.0029 -0.0005 27 1 4.1355 -2.1324 0.0093 28 1 2.6005 -3.5548 -1.4977 29 1 0.8709 -5.4472 -0.9617 30 1 -3.3939 -4.2001 3.3175 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259081012.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:49 Heat of formation + Delta-G solvation = 81.479526 kcal Electronic energy + Delta-G solvation = -16821.751142 eV Core-core repulsion = 14029.965274 eV Total energy + Delta-G solvation = -2791.785868 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.057 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.15477 -38.54191 -36.43652 -33.73641 -32.66268 -32.11390 -29.49322 -28.46192 -26.99376 -25.41603 -22.68491 -21.34929 -20.09061 -19.33680 -17.35252 -16.80675 -16.10916 -15.64521 -14.78681 -14.22427 -13.96031 -13.18932 -13.16108 -13.03485 -12.79900 -12.68242 -12.44775 -12.14321 -11.59052 -11.35408 -11.13583 -11.02968 -10.81532 -10.79783 -10.55476 -10.41219 -9.34915 -8.91627 -8.68752 -8.58296 -8.02359 -7.35494 -6.79862 -4.58264 1.12610 1.35050 2.17097 2.92846 3.16927 3.34218 3.59357 3.73270 3.78162 3.96370 4.37548 4.85282 4.88839 5.24359 5.32434 5.40698 5.42913 5.62664 5.85981 5.93720 6.10948 6.16210 6.24004 6.31685 6.55632 6.63526 6.72200 6.78964 6.90571 7.18483 7.51446 8.17459 8.34057 8.64212 8.70101 9.31727 10.19753 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.030824 B = 0.005966 C = 0.005317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.165386 B = 4691.791545 C = 5264.507408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.079 4.079 3 C -0.094 4.094 4 C -0.057 4.057 5 Cl -0.083 7.083 6 C -0.096 4.096 7 C -0.134 4.134 8 C 0.200 3.800 9 N -0.369 5.369 10 C 0.039 3.961 11 C -0.269 4.269 12 C 0.207 3.793 13 C -0.417 4.417 14 H 0.096 0.904 15 C 0.092 3.908 16 N -0.817 5.817 17 Si 0.943 3.057 18 H -0.267 1.267 19 H -0.312 1.312 20 H -0.243 1.243 21 N -0.414 5.414 22 H 0.076 0.924 23 H 0.056 0.944 24 H 0.080 0.920 25 H 0.133 0.867 26 H 0.133 0.867 27 H 0.133 0.867 28 H 0.151 0.849 29 H 0.134 0.866 30 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.804 9.490 -4.972 15.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.081 4.081 3 C -0.113 4.113 4 C -0.084 4.084 5 Cl -0.054 7.054 6 C -0.115 4.115 7 C -0.156 4.156 8 C 0.104 3.896 9 N -0.144 5.144 10 C -0.096 4.096 11 C -0.299 4.299 12 C 0.056 3.944 13 C -0.456 4.456 14 H 0.114 0.886 15 C -0.129 4.129 16 N -0.445 5.445 17 Si 0.773 3.227 18 H -0.192 1.192 19 H -0.242 1.242 20 H -0.167 1.167 21 N -0.245 5.245 22 H 0.095 0.905 23 H 0.075 0.925 24 H 0.099 0.901 25 H 0.151 0.849 26 H 0.151 0.849 27 H 0.151 0.849 28 H 0.168 0.832 29 H 0.152 0.848 30 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 10.551 10.586 -4.253 15.539 hybrid contribution 0.519 -0.074 -0.129 0.540 sum 11.069 10.511 -4.382 15.882 Atomic orbital electron populations 1.20782 0.89521 1.02523 1.03342 1.19859 0.97299 0.90774 1.00213 1.20748 0.91712 0.98062 1.00815 1.20739 0.92207 0.86592 1.08898 1.98337 1.77024 1.32840 1.97238 1.20716 0.99955 0.90027 1.00821 1.20979 0.92309 0.98344 1.03948 1.17361 0.89788 0.84413 0.98066 1.45452 1.26844 1.08621 1.33510 1.22117 1.00948 0.88617 0.97941 1.22574 1.00857 1.00032 1.06405 1.20880 0.92418 0.89894 0.91196 1.18596 1.08506 1.04777 1.13751 0.88617 1.26043 0.92882 0.98417 0.95549 1.69650 1.12189 1.39259 1.23390 0.85593 0.81628 0.80596 0.74873 1.19246 1.24224 1.16732 1.77557 1.06652 1.17338 1.22927 0.90509 0.92531 0.90084 0.84901 0.84915 0.84925 0.83193 0.84844 0.90548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.91 8.94 36.00 0.32 -1.59 16 2 C -0.08 -1.37 5.90 -104.42 -0.62 -1.99 16 3 C -0.09 -1.38 9.48 -39.58 -0.38 -1.75 16 4 C -0.06 -0.78 6.32 -39.44 -0.25 -1.03 16 5 Cl -0.08 -0.99 28.95 -51.86 -1.50 -2.49 16 6 C -0.10 -1.27 9.82 -39.58 -0.39 -1.66 16 7 C -0.13 -2.04 9.59 -39.38 -0.38 -2.42 16 8 C 0.20 3.70 6.23 -83.67 -0.52 3.18 16 9 N -0.37 -7.87 3.18 -10.65 -0.03 -7.90 16 10 C 0.04 0.75 10.96 -16.88 -0.18 0.56 16 11 C -0.27 -5.80 11.02 -37.58 -0.41 -6.21 16 12 C 0.21 5.26 6.63 -82.93 -0.55 4.71 16 13 C -0.42 -11.37 9.98 -37.82 -0.38 -11.74 16 14 H 0.10 2.65 8.06 -52.49 -0.42 2.23 16 15 C 0.09 2.48 5.52 -17.35 -0.10 2.39 16 16 N -0.82 -22.28 13.93 55.54 0.77 -21.51 16 17 Si 0.94 23.26 25.85 -169.99 -4.39 18.87 16 18 H -0.27 -6.51 6.22 56.52 0.35 -6.16 16 19 H -0.31 -7.49 7.11 56.52 0.40 -7.09 16 20 H -0.24 -6.31 6.43 56.52 0.36 -5.94 16 21 N -0.41 -10.29 5.78 33.25 0.19 -10.10 16 22 H 0.08 1.52 7.26 -51.93 -0.38 1.14 16 23 H 0.06 0.84 8.09 -51.93 -0.42 0.42 16 24 H 0.08 1.68 6.71 -51.93 -0.35 1.33 16 25 H 0.13 1.68 8.06 -52.48 -0.42 1.25 16 26 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 27 H 0.13 1.80 7.97 -52.49 -0.42 1.39 16 28 H 0.15 2.24 8.06 -52.49 -0.42 1.82 16 29 H 0.13 2.56 8.06 -52.49 -0.42 2.13 16 30 H 0.28 7.12 8.30 -40.82 -0.34 6.78 16 LS Contribution 276.47 15.07 4.17 4.17 Total: -1.00 -28.70 276.47 -7.53 -36.23 By element: Atomic # 1 Polarization: 3.19 SS G_CDS: -2.90 Total: 0.29 kcal Atomic # 6 Polarization: -13.73 SS G_CDS: -3.83 Total: -17.55 kcal Atomic # 7 Polarization: -40.44 SS G_CDS: 0.93 Total: -39.51 kcal Atomic # 14 Polarization: 23.26 SS G_CDS: -4.39 Total: 18.87 kcal Atomic # 17 Polarization: -0.99 SS G_CDS: -1.50 Total: -2.49 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -28.70 -7.53 -36.23 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259081012.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.710 kcal (2) G-P(sol) polarization free energy of solvation -28.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.230 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds