Wall clock time and date at job start Mon Mar 30 2020 06:35:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38088 * 120.03264 * 2 1 4 4 C 1.38401 * 120.06348 * 180.02562 * 3 2 1 5 5 Cl 1.73607 * 119.93287 * 179.97438 * 4 3 2 6 6 C 1.38450 * 120.13316 * 359.97438 * 4 3 2 7 7 C 1.38042 * 120.06002 * 359.75205 * 6 4 3 8 8 C 1.38945 * 120.03562 * 180.02562 * 2 1 3 9 9 N 1.39835 * 120.06370 * 359.94838 * 8 2 1 10 10 C 1.36203 * 125.42470 * 135.29860 * 9 8 2 11 11 C 1.34657 * 108.44857 * 180.27021 * 10 9 8 12 12 C 1.46372 * 107.15325 * 359.97438 * 11 10 9 13 13 C 1.41258 * 126.49449 * 179.97438 * 12 11 10 14 14 H 1.08002 * 119.99664 * 353.93137 * 13 12 11 15 15 C 1.39876 * 120.00488 * 173.93352 * 13 12 11 16 16 N 1.30878 * 120.00017 * 169.83428 * 15 13 12 17 17 Si 1.86803 * 119.99610 * 349.83247 * 15 13 12 18 18 H 1.48494 * 109.46921 * 84.82860 * 17 15 13 19 19 H 1.48500 * 109.46782 * 204.82712 * 17 15 13 20 20 H 1.48503 * 109.47234 * 324.82388 * 17 15 13 21 21 N 1.33023 * 107.01841 * 0.02562 * 12 11 10 22 22 H 1.09003 * 109.47051 * 270.35038 * 1 2 3 23 23 H 1.09003 * 109.47094 * 30.35615 * 1 2 3 24 24 H 1.09003 * 109.46971 * 150.35406 * 1 2 3 25 25 H 1.08005 * 119.96782 * 359.97438 * 3 2 1 26 26 H 1.08002 * 119.96731 * 180.02562 * 6 4 3 27 27 H 1.08002 * 120.02752 * 180.25408 * 7 6 4 28 28 H 1.07993 * 125.77823 * 0.27020 * 10 9 8 29 29 H 1.08002 * 126.42204 * 180.02562 * 11 10 9 30 30 H 0.96998 * 119.99815 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1955 0.0000 4 6 3.5821 1.1962 -0.0005 5 17 4.4476 2.7012 -0.0012 6 6 4.2778 -0.0008 -0.0005 7 6 3.5923 -1.1990 0.0052 8 6 2.2025 -1.2029 -0.0005 9 7 1.5054 -2.4151 0.0000 10 6 1.7951 -3.4927 -0.7809 11 6 0.9074 -4.4678 -0.5080 12 6 0.0020 -3.9519 0.5199 13 6 -1.0847 -4.6397 1.1043 14 1 -1.3737 -5.6104 0.7295 15 6 -1.7864 -4.0635 2.1683 16 7 -2.9075 -4.5994 2.5794 17 14 -1.1233 -2.5293 3.0026 18 1 -1.5584 -1.3276 2.2466 19 1 -1.6449 -2.4563 4.3911 20 1 0.3603 -2.5845 3.0334 21 7 0.3955 -2.7122 0.7988 22 1 -0.3633 0.0063 1.0277 23 1 -0.3633 0.8868 -0.5194 24 1 -0.3633 -0.8932 -0.5083 25 1 1.6581 2.1308 -0.0004 26 1 5.3578 0.0029 -0.0005 27 1 4.1355 -2.1324 0.0093 28 1 2.6005 -3.5548 -1.4977 29 1 0.8709 -5.4472 -0.9617 30 1 -3.3939 -4.2001 3.3175 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259081012.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:49 Heat of formation + Delta-G solvation = 66.334007 kcal Electronic energy + Delta-G solvation = -16822.407901 eV Core-core repulsion = 14029.965274 eV Total energy + Delta-G solvation = -2792.442627 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.057 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.67848 -39.94287 -37.51136 -35.62865 -33.98631 -33.66120 -31.11935 -30.05463 -28.49051 -27.06278 -24.02752 -22.73873 -21.66538 -21.07429 -18.80482 -18.68272 -17.35068 -16.97889 -16.64228 -15.47487 -15.38313 -15.00523 -14.63385 -14.48862 -14.32988 -14.16451 -13.82189 -13.53936 -13.11656 -12.90665 -12.69777 -12.57308 -12.46990 -12.42383 -12.17566 -11.83327 -11.27338 -10.47430 -10.41602 -9.95891 -9.66020 -8.94219 -8.82202 -6.58995 -0.13727 0.17412 1.08131 1.22480 1.27521 1.48626 1.60967 2.00846 2.07059 2.45101 2.51670 3.30263 3.67980 3.72336 4.03212 4.09925 4.18123 4.38701 4.50894 4.60007 4.68863 4.79186 4.89146 4.96792 5.11313 5.18603 5.19235 5.36148 5.46105 5.54069 5.70155 6.19583 6.61992 6.72672 6.81109 7.45247 8.22699 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.030824 B = 0.005966 C = 0.005317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.165386 B = 4691.791545 C = 5264.507408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.095 4.095 3 C -0.091 4.091 4 C -0.049 4.049 5 Cl -0.060 7.060 6 C -0.085 4.085 7 C -0.123 4.123 8 C 0.155 3.845 9 N -0.371 5.371 10 C 0.064 3.936 11 C -0.301 4.301 12 C 0.185 3.815 13 C -0.450 4.450 14 H 0.074 0.926 15 C 0.061 3.939 16 N -0.853 5.853 17 Si 0.995 3.005 18 H -0.269 1.269 19 H -0.302 1.302 20 H -0.264 1.264 21 N -0.427 5.427 22 H 0.053 0.947 23 H 0.087 0.913 24 H 0.047 0.953 25 H 0.153 0.847 26 H 0.168 0.832 27 H 0.152 0.848 28 H 0.203 0.797 29 H 0.150 0.850 30 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.130 11.975 -5.917 19.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.097 4.097 3 C -0.110 4.110 4 C -0.077 4.077 5 Cl -0.031 7.031 6 C -0.104 4.104 7 C -0.144 4.144 8 C 0.062 3.938 9 N -0.148 5.148 10 C -0.072 4.072 11 C -0.331 4.331 12 C 0.032 3.968 13 C -0.489 4.489 14 H 0.092 0.908 15 C -0.155 4.155 16 N -0.483 5.483 17 Si 0.825 3.175 18 H -0.195 1.195 19 H -0.231 1.231 20 H -0.190 1.190 21 N -0.256 5.256 22 H 0.072 0.928 23 H 0.105 0.895 24 H 0.066 0.934 25 H 0.171 0.829 26 H 0.185 0.815 27 H 0.170 0.830 28 H 0.220 0.780 29 H 0.168 0.832 30 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 13.879 13.111 -5.185 19.784 hybrid contribution -0.213 -0.574 0.026 0.612 sum 13.666 12.537 -5.159 19.250 Atomic orbital electron populations 1.20655 0.90745 1.02399 1.01834 1.19908 0.96755 0.91741 1.01338 1.20909 0.92407 0.97777 0.99955 1.20935 0.92108 0.87905 1.06706 1.98360 1.76336 1.31388 1.96988 1.21090 1.01600 0.88931 0.98791 1.21196 0.90756 1.00069 1.02331 1.17827 0.91194 0.83514 1.01288 1.45593 1.25953 1.10219 1.33003 1.22756 1.00736 0.86765 0.96947 1.22744 1.01390 1.01927 1.07018 1.20993 0.92853 0.90450 0.92544 1.18613 1.10460 1.04684 1.15145 0.90784 1.26516 0.93062 1.00034 0.95927 1.69670 1.13153 1.40713 1.24740 0.84827 0.79549 0.78495 0.74598 1.19526 1.23145 1.18962 1.77340 1.07702 1.17045 1.23521 0.92792 0.89458 0.93362 0.82899 0.81457 0.83026 0.78047 0.83245 0.89876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.58 8.94 71.24 0.64 -2.94 16 2 C -0.09 -3.13 5.90 -19.73 -0.12 -3.24 16 3 C -0.09 -2.37 9.48 22.27 0.21 -2.16 16 4 C -0.05 -1.13 6.32 22.36 0.14 -0.98 16 5 Cl -0.06 -1.15 28.95 -2.72 -0.08 -1.23 16 6 C -0.09 -1.82 9.82 22.27 0.22 -1.60 16 7 C -0.12 -3.22 9.59 22.40 0.21 -3.00 16 8 C 0.16 5.39 6.23 38.21 0.24 5.63 16 9 N -0.37 -15.40 3.18 -187.61 -0.60 -15.99 16 10 C 0.06 2.35 10.96 83.19 0.91 3.26 16 11 C -0.30 -12.98 11.02 23.57 0.26 -12.72 16 12 C 0.18 9.70 6.63 41.82 0.28 9.98 16 13 C -0.45 -25.89 9.98 23.41 0.23 -25.65 16 14 H 0.07 4.41 8.06 -2.91 -0.02 4.39 16 15 C 0.06 3.46 5.52 85.23 0.47 3.93 16 16 N -0.85 -48.59 13.93 21.82 0.30 -48.29 16 17 Si 1.00 49.95 25.85 68.60 1.77 51.73 16 18 H -0.27 -13.37 6.22 99.48 0.62 -12.75 16 19 H -0.30 -14.33 7.11 99.48 0.71 -13.63 16 20 H -0.26 -13.93 6.43 99.48 0.64 -13.29 16 21 N -0.43 -21.48 5.78 -48.70 -0.28 -21.77 16 22 H 0.05 2.15 7.26 -2.39 -0.02 2.13 16 23 H 0.09 2.47 8.09 -2.39 -0.02 2.45 16 24 H 0.05 2.03 6.71 -2.39 -0.02 2.01 16 25 H 0.15 3.28 8.06 -2.91 -0.02 3.26 16 26 H 0.17 2.49 8.06 -2.91 -0.02 2.46 16 27 H 0.15 3.38 7.97 -2.91 -0.02 3.36 16 28 H 0.20 5.10 8.06 -2.91 -0.02 5.08 16 29 H 0.15 5.73 8.06 -2.91 -0.02 5.70 16 30 H 0.29 15.13 8.30 -92.71 -0.77 14.36 16 Total: -1.00 -65.34 276.47 5.82 -59.52 By element: Atomic # 1 Polarization: 4.53 SS G_CDS: 1.00 Total: 5.53 kcal Atomic # 6 Polarization: -33.20 SS G_CDS: 3.70 Total: -29.51 kcal Atomic # 7 Polarization: -85.47 SS G_CDS: -0.57 Total: -86.05 kcal Atomic # 14 Polarization: 49.95 SS G_CDS: 1.77 Total: 51.73 kcal Atomic # 17 Polarization: -1.15 SS G_CDS: -0.08 Total: -1.23 kcal Total: -65.34 5.82 -59.52 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259081012.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.856 kcal (2) G-P(sol) polarization free energy of solvation -65.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.522 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds