Wall clock time and date at job start Mon Mar 30 2020 06:35:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38108 * 120.02133 * 2 1 4 4 C 1.38274 * 120.08553 * 180.02562 * 3 2 1 5 5 C 1.38448 * 120.14440 * 359.97438 * 4 3 2 6 6 Cl 1.73592 * 119.97479 * 179.97438 * 5 4 3 7 7 C 1.38182 * 120.05264 * 359.72603 * 5 4 3 8 8 C 1.38940 * 120.02497 * 180.02562 * 2 1 3 9 9 N 1.39823 * 120.07366 * 359.97438 * 8 2 1 10 10 C 1.36215 * 125.42669 * 132.63317 * 9 8 2 11 11 C 1.34654 * 108.44662 * 179.97438 * 10 9 8 12 12 C 1.46380 * 107.14998 * 359.97438 * 11 10 9 13 13 C 1.41271 * 126.48481 * 179.73702 * 12 11 10 14 14 H 1.07999 * 119.99825 * 0.02562 * 13 12 11 15 15 C 1.39878 * 119.99980 * 180.02562 * 13 12 11 16 16 N 1.30888 * 119.99485 * 0.02562 * 15 13 12 17 17 Si 1.86792 * 119.99979 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47214 * 60.00130 * 17 15 13 19 19 H 1.48506 * 109.46945 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47024 * 299.99985 * 17 15 13 21 21 N 1.33001 * 107.02528 * 0.02562 * 12 11 10 22 22 H 1.09006 * 109.47176 * 264.64481 * 1 2 3 23 23 H 1.08998 * 109.47379 * 24.64652 * 1 2 3 24 24 H 1.09001 * 109.47440 * 144.65055 * 1 2 3 25 25 H 1.07995 * 119.96030 * 0.05067 * 3 2 1 26 26 H 1.08003 * 119.92127 * 180.02562 * 4 3 2 27 27 H 1.07994 * 120.04795 * 180.28984 * 7 5 4 28 28 H 1.07994 * 125.77407 * 359.97438 * 10 9 8 29 29 H 1.07997 * 126.41635 * 179.97438 * 11 10 9 30 30 H 0.97004 * 119.99473 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1980 1.1958 0.0000 4 6 3.5808 1.1973 -0.0005 5 6 4.2774 0.0009 -0.0005 6 17 6.0133 0.0080 -0.0019 7 6 3.5919 -1.1989 0.0057 8 6 2.2023 -1.2030 -0.0005 9 7 1.5052 -2.4151 -0.0005 10 6 1.7630 -3.4741 -0.8175 11 6 0.8906 -4.4580 -0.5277 12 6 0.0300 -3.9682 0.5504 13 6 -1.0312 -4.6710 1.1632 14 1 -1.2723 -5.6732 0.8410 15 6 -1.7697 -4.0688 2.1872 16 7 -1.4777 -2.8540 2.5772 17 14 -3.1724 -4.9984 2.9980 18 1 -2.6492 -6.2427 3.6170 19 1 -3.7911 -4.1462 4.0451 20 1 -4.1926 -5.3450 1.9760 21 7 0.4323 -2.7338 0.8394 22 1 -0.3634 -0.0959 1.0232 23 1 -0.3634 0.9340 -0.4285 24 1 -0.3634 -0.8382 -0.5946 25 1 1.6578 2.1309 0.0008 26 1 4.1184 2.1340 -0.0001 27 1 4.1354 -2.1322 0.0104 28 1 2.5362 -3.5173 -1.5702 29 1 0.8362 -5.4268 -1.0018 30 1 -1.9901 -2.4363 3.2871 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259085163.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:51 Heat of formation + Delta-G solvation = 70.108372 kcal Electronic energy + Delta-G solvation = -16697.146816 eV Core-core repulsion = 13904.867858 eV Total energy + Delta-G solvation = -2792.278958 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.057 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.45082 -39.78302 -37.53646 -35.52060 -33.73836 -33.34553 -30.61934 -29.97251 -28.22893 -27.01625 -24.00462 -22.67222 -21.39336 -21.05665 -18.69410 -18.36527 -16.95397 -16.86376 -16.46491 -15.71185 -15.27683 -14.68042 -14.53608 -14.33415 -14.13235 -13.97525 -13.80470 -13.35965 -12.89677 -12.71212 -12.61741 -12.43378 -12.34780 -12.13365 -11.94589 -11.80694 -11.27690 -10.52497 -10.22753 -9.71036 -9.48638 -8.84720 -8.38898 -6.40395 0.03387 0.14393 1.02816 1.41756 1.43651 1.55788 1.63575 2.24645 2.33719 2.34118 2.59344 3.55091 3.76123 3.93117 4.03093 4.10760 4.26401 4.47137 4.65943 4.66882 4.79064 4.84462 5.09710 5.15801 5.21805 5.27007 5.32768 5.38612 5.55698 5.69323 5.83805 6.36154 6.85591 6.91161 7.11456 7.87564 8.59018 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.031916 B = 0.005189 C = 0.004831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.096999 B = 5395.236614 C = 5794.394188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.098 4.098 3 C -0.084 4.084 4 C -0.115 4.115 5 C -0.024 4.024 6 Cl -0.059 7.059 7 C -0.138 4.138 8 C 0.166 3.834 9 N -0.388 5.388 10 C 0.035 3.965 11 C -0.310 4.310 12 C 0.170 3.830 13 C -0.473 4.473 14 H 0.088 0.912 15 C 0.025 3.975 16 N -0.808 5.808 17 Si 0.989 3.011 18 H -0.261 1.261 19 H -0.275 1.275 20 H -0.259 1.259 21 N -0.344 5.344 22 H 0.054 0.946 23 H 0.087 0.913 24 H 0.033 0.967 25 H 0.168 0.832 26 H 0.168 0.832 27 H 0.131 0.869 28 H 0.184 0.816 29 H 0.146 0.854 30 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.149 8.026 -4.952 12.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.101 4.101 3 C -0.102 4.102 4 C -0.133 4.133 5 C -0.051 4.051 6 Cl -0.030 7.030 7 C -0.160 4.160 8 C 0.072 3.928 9 N -0.164 5.164 10 C -0.102 4.102 11 C -0.340 4.340 12 C 0.014 3.986 13 C -0.512 4.512 14 H 0.106 0.894 15 C -0.192 4.192 16 N -0.436 5.436 17 Si 0.810 3.190 18 H -0.185 1.185 19 H -0.199 1.199 20 H -0.183 1.183 21 N -0.170 5.170 22 H 0.072 0.928 23 H 0.105 0.895 24 H 0.052 0.948 25 H 0.186 0.814 26 H 0.186 0.814 27 H 0.149 0.851 28 H 0.201 0.799 29 H 0.163 0.837 30 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 8.178 9.260 -4.164 13.037 hybrid contribution -0.314 -1.554 -0.090 1.588 sum 7.864 7.706 -4.255 11.804 Atomic orbital electron populations 1.20436 0.90606 1.01311 1.01709 1.20246 0.97107 0.92336 1.00369 1.21190 0.93561 0.97265 0.98175 1.21334 0.93820 0.97401 1.00793 1.20628 0.84917 0.94260 1.05286 1.98352 1.08808 1.98916 1.96964 1.20912 0.91709 0.98601 1.04762 1.17478 0.89969 0.84385 1.00993 1.46314 1.28937 1.10395 1.30802 1.22627 1.01331 0.88467 0.97789 1.22862 1.03424 1.01622 1.06130 1.21249 0.93991 0.91117 0.92259 1.18991 1.12795 1.01683 1.17755 0.89390 1.26781 1.00374 0.95532 0.96470 1.70057 1.36506 1.13675 1.23340 0.85161 0.77372 0.78497 0.77998 1.18523 1.19944 1.18333 1.78949 1.04731 1.16526 1.16787 0.92761 0.89460 0.94821 0.81412 0.81424 0.85065 0.79904 0.83664 0.91406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -3.28 8.81 71.24 0.63 -2.65 16 2 C -0.10 -3.56 5.90 -19.73 -0.12 -3.68 16 3 C -0.08 -2.20 9.67 22.25 0.22 -1.98 16 4 C -0.11 -2.71 9.83 22.33 0.22 -2.49 16 5 C -0.02 -0.65 6.32 22.31 0.14 -0.51 16 6 Cl -0.06 -1.39 28.95 -2.72 -0.08 -1.47 16 7 C -0.14 -4.67 9.41 22.43 0.21 -4.46 16 8 C 0.17 6.71 6.20 38.21 0.24 6.95 16 9 N -0.39 -18.58 3.14 -187.62 -0.59 -19.17 16 10 C 0.03 1.52 11.04 83.19 0.92 2.44 16 11 C -0.31 -14.96 11.02 23.57 0.26 -14.70 16 12 C 0.17 9.70 6.92 41.83 0.29 9.99 16 13 C -0.47 -26.69 9.43 23.41 0.22 -26.47 16 14 H 0.09 4.62 7.84 -2.91 -0.02 4.60 16 15 C 0.02 1.34 5.49 85.23 0.47 1.80 16 16 N -0.81 -45.97 11.96 21.82 0.26 -45.71 16 17 Si 0.99 40.33 29.56 68.60 2.03 42.35 16 18 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 19 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 20 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 21 N -0.34 -19.63 9.13 -48.70 -0.44 -20.07 16 22 H 0.05 2.45 8.14 -2.38 -0.02 2.43 16 23 H 0.09 2.62 8.05 -2.39 -0.02 2.60 16 24 H 0.03 1.54 7.21 -2.39 -0.02 1.52 16 25 H 0.17 3.17 8.06 -2.91 -0.02 3.15 16 26 H 0.17 2.73 8.06 -2.91 -0.02 2.71 16 27 H 0.13 4.32 8.02 -2.91 -0.02 4.30 16 28 H 0.18 6.15 8.06 -2.91 -0.02 6.12 16 29 H 0.15 6.15 8.06 -2.91 -0.02 6.12 16 30 H 0.28 14.44 8.30 -92.71 -0.77 13.67 16 Total: -1.00 -67.65 283.88 6.02 -61.62 By element: Atomic # 1 Polarization: 17.05 SS G_CDS: 1.16 Total: 18.21 kcal Atomic # 6 Polarization: -39.45 SS G_CDS: 3.69 Total: -35.76 kcal Atomic # 7 Polarization: -84.18 SS G_CDS: -0.77 Total: -84.96 kcal Atomic # 14 Polarization: 40.33 SS G_CDS: 2.03 Total: 42.35 kcal Atomic # 17 Polarization: -1.39 SS G_CDS: -0.08 Total: -1.47 kcal Total: -67.65 6.02 -61.62 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259085163.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.733 kcal (2) G-P(sol) polarization free energy of solvation -67.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.624 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds