Wall clock time and date at job start Mon Mar 30 2020 06:36:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30329 * 125.96119 * 2 1 4 4 N 1.39873 * 109.25539 * 180.16170 * 3 2 1 5 5 C 1.40056 * 125.69189 * 179.80537 * 4 3 2 6 6 C 1.38904 * 120.06543 * 179.97438 * 5 4 3 7 7 C 1.38094 * 119.95685 * 180.30112 * 6 5 4 8 8 C 1.38294 * 120.07784 * 359.72063 * 7 6 5 9 9 C 1.38385 * 120.13062 * 0.02562 * 8 7 6 10 10 Cl 1.73601 * 119.97660 * 180.02562 * 9 8 7 11 11 C 1.38246 * 120.04357 * 359.97438 * 9 8 7 12 12 C 1.34750 * 108.62111 * 359.54233 * 4 3 2 13 13 C 1.39285 * 107.15892 * 0.26721 * 12 4 3 14 14 C 1.41539 * 126.55577 * 180.02562 * 13 12 4 15 15 H 1.08000 * 119.99835 * 179.97438 * 14 13 12 16 16 C 1.39714 * 119.99944 * 359.97438 * 14 13 12 17 17 N 1.31016 * 119.99726 * 359.97438 * 16 14 13 18 18 Si 1.86793 * 119.99713 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47548 * 359.97438 * 18 16 14 20 20 H 1.48502 * 109.47615 * 119.99651 * 18 16 14 21 21 H 1.48502 * 109.46874 * 239.99281 * 18 16 14 22 22 H 1.08999 * 109.46746 * 270.33399 * 1 2 3 23 23 H 1.08999 * 109.47197 * 30.33320 * 1 2 3 24 24 H 1.08997 * 109.47006 * 150.33437 * 1 2 3 25 25 H 1.08007 * 120.02304 * 359.97438 * 6 5 4 26 26 H 1.07997 * 119.96118 * 179.70021 * 7 6 5 27 27 H 1.08006 * 119.92875 * 179.97438 * 8 7 6 28 28 H 1.08002 * 120.03797 * 180.02562 * 11 9 8 29 29 H 1.07998 * 126.42064 * 180.26147 * 12 4 3 30 30 H 0.97004 * 119.99147 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2724 1.0549 0.0000 4 7 3.6121 0.6528 -0.0037 5 6 4.7217 1.5074 -0.0087 6 6 6.0065 0.9796 -0.0115 7 6 7.0990 1.8243 -0.0101 8 6 6.9153 3.1950 -0.0118 9 6 5.6368 3.7245 -0.0143 10 17 5.4108 5.4458 -0.0171 11 6 4.5394 2.8837 -0.0157 12 6 3.6571 -0.6939 0.0041 13 6 2.3408 -1.1491 0.0067 14 6 1.9156 -2.4991 0.0150 15 1 0.8613 -2.7332 0.0167 16 6 2.8599 -3.5288 0.0212 17 7 4.1389 -3.2447 0.0187 18 14 2.2987 -5.3104 0.0315 19 1 0.8146 -5.3621 0.0322 20 1 2.8178 -6.0000 -1.1770 21 1 2.8177 -5.9858 1.2479 22 1 -0.3633 0.0060 1.0277 23 1 -0.3633 0.8870 -0.5190 24 1 -0.3633 -0.8929 -0.5086 25 1 6.1511 -0.0907 -0.0094 26 1 8.0980 1.4140 -0.0074 27 1 7.7715 3.8534 -0.0103 28 1 3.5416 3.2971 -0.0181 29 1 4.5471 -1.3056 0.0077 30 1 4.7944 -3.9598 0.0225 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259179555.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:16 Heat of formation + Delta-G solvation = 67.785513 kcal Electronic energy + Delta-G solvation = -16486.583865 eV Core-core repulsion = 13694.204180 eV Total energy + Delta-G solvation = -2792.379685 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.057 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.81590 -39.90573 -37.50974 -35.60653 -34.54097 -31.98679 -31.22981 -30.72777 -28.31315 -26.92942 -23.78905 -23.48568 -21.47325 -20.21490 -19.29461 -18.28616 -17.14464 -16.38097 -16.14723 -15.96322 -15.81893 -14.70291 -14.64830 -14.50541 -14.44911 -13.78425 -13.63104 -13.38361 -12.96034 -12.82585 -12.78203 -12.45181 -12.37796 -12.14761 -11.95543 -11.76755 -11.32509 -10.98082 -10.69749 -9.88564 -9.44292 -8.88883 -8.44658 -6.11884 -0.05891 0.15687 1.02776 1.38061 1.45433 1.52903 1.59367 1.91988 2.20465 2.32457 2.73266 3.44967 3.75331 3.94557 4.10090 4.18433 4.38893 4.42166 4.46076 4.73747 4.89174 4.95904 5.02138 5.11802 5.21464 5.33495 5.35694 5.57311 5.70500 5.76281 5.88360 6.38804 6.81181 6.98063 7.04149 7.28580 8.56969 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.030668 B = 0.005138 C = 0.004411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.790087 B = 5447.953768 C = 6345.586548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 C 0.029 3.971 3 N -0.340 5.340 4 N -0.345 5.345 5 C 0.180 3.820 6 C -0.165 4.165 7 C -0.060 4.060 8 C -0.138 4.138 9 C -0.008 4.008 10 Cl -0.061 7.061 11 C -0.156 4.156 12 C -0.095 4.095 13 C -0.065 4.065 14 C -0.447 4.447 15 H 0.082 0.918 16 C 0.012 3.988 17 N -0.861 5.861 18 Si 0.991 3.009 19 H -0.257 1.257 20 H -0.273 1.273 21 H -0.273 1.273 22 H 0.080 0.920 23 H 0.075 0.925 24 H 0.080 0.920 25 H 0.127 0.873 26 H 0.176 0.824 27 H 0.168 0.832 28 H 0.125 0.875 29 H 0.191 0.809 30 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.980 7.557 -0.031 9.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.140 4.140 3 N -0.161 5.161 4 N -0.124 5.124 5 C 0.083 3.917 6 C -0.187 4.187 7 C -0.078 4.078 8 C -0.158 4.158 9 C -0.035 4.035 10 Cl -0.032 7.032 11 C -0.177 4.177 12 C -0.233 4.233 13 C -0.073 4.073 14 C -0.480 4.480 15 H 0.101 0.899 16 C -0.196 4.196 17 N -0.492 5.492 18 Si 0.813 3.187 19 H -0.180 1.180 20 H -0.198 1.198 21 H -0.199 1.199 22 H 0.098 0.902 23 H 0.094 0.906 24 H 0.099 0.901 25 H 0.145 0.855 26 H 0.193 0.807 27 H 0.186 0.814 28 H 0.143 0.857 29 H 0.207 0.793 30 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 5.166 8.778 -0.034 10.185 hybrid contribution -0.304 -1.584 0.017 1.613 sum 4.861 7.194 -0.017 8.683 Atomic orbital electron populations 1.20059 0.84784 1.03115 1.02995 1.23359 0.98068 0.90912 1.01645 1.76344 0.87335 1.24815 1.27566 1.45231 1.02928 1.05053 1.59154 1.17851 0.85496 0.89351 0.98998 1.21147 0.90373 1.01576 1.05632 1.21261 0.99082 0.91896 0.95572 1.21311 0.95383 0.95906 1.03167 1.20701 0.94462 0.84676 1.03646 1.98347 1.97610 1.10317 1.96881 1.20530 0.99476 0.90751 1.06977 1.23861 1.01480 0.81095 1.16827 1.18583 0.90490 0.94208 1.04028 1.19188 0.94643 0.89261 1.44952 0.89941 1.26535 0.94406 1.05346 0.93267 1.69511 1.02390 1.35337 1.41970 0.84985 0.79460 0.76066 0.78152 1.18045 1.19847 1.19864 0.90179 0.90598 0.90136 0.85502 0.80691 0.81445 0.85743 0.79321 0.90906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.90 10.24 71.24 0.73 -1.17 16 2 C 0.03 1.42 7.28 43.71 0.32 1.74 16 3 N -0.34 -17.10 11.73 -46.29 -0.54 -17.65 16 4 N -0.35 -17.31 3.77 -185.15 -0.70 -18.00 16 5 C 0.18 7.57 6.68 38.13 0.25 7.83 16 6 C -0.17 -5.88 9.44 22.40 0.21 -5.67 16 7 C -0.06 -1.52 10.04 22.25 0.22 -1.30 16 8 C -0.14 -3.36 9.83 22.32 0.22 -3.14 16 9 C -0.01 -0.23 6.32 22.31 0.14 -0.08 16 10 Cl -0.06 -1.55 28.95 -2.72 -0.08 -1.63 16 11 C -0.16 -5.82 9.43 22.41 0.21 -5.61 16 12 C -0.10 -5.17 9.76 84.50 0.82 -4.35 16 13 C -0.06 -3.53 5.94 -21.29 -0.13 -3.66 16 14 C -0.45 -23.77 9.15 23.44 0.21 -23.56 16 15 H 0.08 4.09 7.37 -2.91 -0.02 4.07 16 16 C 0.01 0.60 5.49 85.17 0.47 1.06 16 17 N -0.86 -44.74 10.33 21.79 0.23 -44.52 16 18 Si 0.99 38.71 29.56 68.60 2.03 40.74 16 19 H -0.26 -9.62 7.11 99.48 0.71 -8.91 16 20 H -0.27 -10.39 7.11 99.48 0.71 -9.69 16 21 H -0.27 -10.40 7.11 99.48 0.71 -9.70 16 22 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 23 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 24 H 0.08 2.84 7.61 -2.39 -0.02 2.83 16 25 H 0.13 4.74 6.71 -2.91 -0.02 4.72 16 26 H 0.18 3.01 8.06 -2.91 -0.02 2.99 16 27 H 0.17 2.83 8.06 -2.91 -0.02 2.81 16 28 H 0.12 4.95 7.68 -2.91 -0.02 4.93 16 29 H 0.19 10.38 4.70 -2.91 -0.01 10.36 16 30 H 0.28 13.27 8.30 -92.71 -0.77 12.50 16 Total: -1.00 -62.70 280.03 5.79 -56.91 By element: Atomic # 1 Polarization: 20.88 SS G_CDS: 1.17 Total: 22.06 kcal Atomic # 6 Polarization: -41.59 SS G_CDS: 3.69 Total: -37.90 kcal Atomic # 7 Polarization: -79.15 SS G_CDS: -1.02 Total: -80.17 kcal Atomic # 14 Polarization: 38.71 SS G_CDS: 2.03 Total: 40.74 kcal Atomic # 17 Polarization: -1.55 SS G_CDS: -0.08 Total: -1.63 kcal Total: -62.70 5.79 -56.91 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259179555.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.691 kcal (2) G-P(sol) polarization free energy of solvation -62.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.905 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds