Wall clock time and date at job start Mon Mar 30 2020 06:42:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.36137 * 119.70461 * 2 1 4 4 C 1.41130 * 120.45714 * 180.02562 * 3 2 1 5 5 C 1.45387 * 129.34709 * 179.97438 * 4 3 2 6 6 C 1.31824 * 114.89601 * 180.02562 * 5 4 3 7 7 S 1.75295 * 111.40741 * 0.02562 * 6 5 4 8 8 C 1.39779 * 118.83217 * 359.97438 * 4 3 2 9 9 C 1.39816 * 119.75573 * 359.97438 * 8 4 3 10 10 C 1.37505 * 120.17727 * 0.03876 * 9 8 4 11 11 C 1.50693 * 119.90813 * 179.97438 * 10 9 8 12 12 H 1.09004 * 109.47458 * 145.02487 * 11 10 9 13 13 O 1.42901 * 109.47474 * 25.01821 * 11 10 9 14 14 C 1.53002 * 109.46943 * 265.01827 * 11 10 9 15 15 C 1.50699 * 109.47519 * 184.99713 * 14 11 10 16 16 H 1.08006 * 119.99513 * 0.02562 * 15 14 11 17 17 C 1.37877 * 120.00610 * 180.02562 * 15 14 11 18 18 N 1.31516 * 119.99520 * 0.02562 * 17 15 14 19 19 Si 1.86791 * 120.00509 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.46997 * 59.99936 * 19 17 15 21 21 H 1.48494 * 109.47334 * 180.02562 * 19 17 15 22 22 H 1.48508 * 109.47300 * 300.00515 * 19 17 15 23 23 H 1.09001 * 109.46623 * 90.00706 * 1 2 3 24 24 H 1.08999 * 109.46868 * 210.00081 * 1 2 3 25 25 H 1.09000 * 109.47063 * 330.00515 * 1 2 3 26 26 H 1.07997 * 119.77063 * 359.97438 * 3 2 1 27 27 H 1.08004 * 122.55666 * 0.02562 * 5 4 3 28 28 H 1.07998 * 124.29414 * 179.73244 * 6 5 4 29 29 H 1.07995 * 119.91475 * 180.02562 * 9 8 4 30 30 H 0.96699 * 113.99601 * 300.00557 * 13 11 10 31 31 H 1.09002 * 109.47451 * 305.00250 * 14 11 10 32 32 H 1.09010 * 109.46909 * 65.00106 * 14 11 10 33 33 H 0.97004 * 120.00086 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1816 1.1825 0.0000 4 6 3.5928 1.2010 -0.0005 5 6 4.4997 2.3373 -0.0011 6 6 5.7804 2.0252 -0.0021 7 16 6.0156 0.2880 -0.0031 8 6 4.2829 -0.0145 -0.0005 9 6 3.5699 -1.2173 0.0006 10 6 2.1949 -1.2057 0.0008 11 6 1.4326 -2.5056 0.0014 12 1 0.5224 -2.3928 0.5906 13 8 2.2447 -3.5339 0.5714 14 6 1.0663 -2.8826 -1.4355 15 6 0.2000 -4.1156 -1.4261 16 1 -0.0634 -4.5834 -0.4889 17 6 -0.2564 -4.6467 -2.6138 18 7 0.0647 -4.0774 -3.7550 19 14 -1.3308 -6.1747 -2.6021 20 1 -2.5704 -5.9023 -1.8311 21 1 -1.6852 -6.5414 -3.9967 22 1 -0.5905 -7.2956 -1.9689 23 1 -0.3632 -0.0001 -1.0277 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5138 26 1 1.6331 2.1128 -0.0004 27 1 4.1508 3.3594 -0.0008 28 1 6.5829 2.7479 -0.0068 29 1 4.1005 -2.1579 0.0010 30 1 3.0730 -3.6891 0.0971 31 1 0.5223 -2.0599 -1.8996 32 1 1.9760 -3.0820 -2.0020 33 1 -0.2567 -4.4507 -4.5907 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259465450.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:55 Heat of formation + Delta-G solvation = -21.263834 kcal Electronic energy + Delta-G solvation = -16935.566829 eV Core-core repulsion = 14244.909725 eV Total energy + Delta-G solvation = -2690.657104 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.81423 -37.03671 -34.96635 -32.92851 -31.93923 -30.48178 -28.54665 -26.78844 -24.86061 -22.77147 -22.27586 -20.78073 -19.57626 -17.97690 -16.57259 -16.06760 -15.42274 -14.96484 -14.62394 -14.31943 -13.85879 -13.79093 -13.37744 -13.24925 -12.79675 -12.52703 -12.24579 -11.98228 -11.70923 -11.20940 -11.06008 -11.00929 -10.73712 -10.55041 -10.50300 -10.30448 -10.11528 -9.39508 -9.17609 -9.03019 -8.40646 -8.01965 -7.53481 -6.02872 -4.05058 0.88553 1.46052 1.63541 2.08194 2.40311 3.33625 3.37789 3.41169 3.88684 4.44701 4.64359 4.91676 5.08890 5.14305 5.29062 5.34458 5.37804 5.45858 5.75341 5.79915 5.88936 5.96620 6.04651 6.11743 6.27123 6.38543 6.49910 6.53745 6.66005 6.92696 7.10270 7.48728 7.59165 7.93736 8.30615 8.42219 9.01069 9.58806 11.08166 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.031786 B = 0.004909 C = 0.004652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.678699 B = 5702.420915 C = 6017.054198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.070 4.070 3 C -0.084 4.084 4 C -0.090 4.090 5 C -0.112 4.112 6 C -0.202 4.202 7 S 0.064 5.936 8 C -0.132 4.132 9 C -0.083 4.083 10 C -0.073 4.073 11 C 0.142 3.858 12 H 0.104 0.896 13 O -0.555 6.555 14 C 0.004 3.996 15 C -0.513 4.513 16 H 0.060 0.940 17 C 0.057 3.943 18 N -0.897 5.897 19 Si 0.894 3.106 20 H -0.276 1.276 21 H -0.288 1.288 22 H -0.276 1.276 23 H 0.079 0.921 24 H 0.076 0.924 25 H 0.061 0.939 26 H 0.124 0.876 27 H 0.141 0.859 28 H 0.163 0.837 29 H 0.126 0.874 30 H 0.364 0.636 31 H 0.029 0.971 32 H 0.020 0.980 33 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.004 12.243 7.245 16.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.072 4.072 3 C -0.104 4.104 4 C -0.097 4.097 5 C -0.143 4.143 6 C -0.335 4.335 7 S 0.327 5.673 8 C -0.247 4.247 9 C -0.105 4.105 10 C -0.076 4.076 11 C 0.083 3.917 12 H 0.121 0.879 13 O -0.360 6.360 14 C -0.033 4.033 15 C -0.551 4.551 16 H 0.079 0.921 17 C -0.144 4.144 18 N -0.536 5.536 19 Si 0.722 3.278 20 H -0.202 1.202 21 H -0.214 1.214 22 H -0.202 1.202 23 H 0.098 0.902 24 H 0.095 0.905 25 H 0.080 0.920 26 H 0.142 0.858 27 H 0.159 0.841 28 H 0.181 0.819 29 H 0.143 0.857 30 H 0.211 0.789 31 H 0.047 0.953 32 H 0.038 0.962 33 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 8.826 11.353 7.473 16.206 hybrid contribution -1.193 0.247 -0.668 1.389 sum 7.633 11.601 6.805 15.464 Atomic orbital electron populations 1.20911 0.90552 1.02732 1.03333 1.19303 0.96615 0.92045 0.99247 1.20471 0.91314 0.97812 1.00762 1.19213 0.94124 0.91254 1.05138 1.20916 0.91910 0.98793 1.02632 1.24933 1.00200 0.98847 1.09538 1.84026 1.02829 1.00721 1.79744 1.22543 0.96467 0.97207 1.08440 1.20143 0.93319 0.95444 1.01639 1.20868 0.93474 0.97193 0.96113 1.21289 0.91114 0.80672 0.98592 0.87865 1.86535 1.35393 1.57463 1.56612 1.19722 0.97524 0.97405 0.88655 1.21098 1.30501 1.10775 0.92762 0.92138 1.25007 0.96499 0.97350 0.95564 1.69961 1.45649 1.40530 0.97455 0.86618 0.80900 0.83425 0.76832 1.20206 1.21393 1.20187 0.90226 0.90503 0.91978 0.85842 0.84117 0.81939 0.85653 0.78867 0.95290 0.96196 0.92928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.75 9.36 36.01 0.34 -1.41 16 2 C -0.07 -1.15 5.83 -105.17 -0.61 -1.77 16 3 C -0.08 -1.24 9.66 -39.24 -0.38 -1.62 16 4 C -0.09 -1.36 6.04 -105.38 -0.64 -2.00 16 5 C -0.11 -1.37 10.39 -38.64 -0.40 -1.77 16 6 C -0.20 -2.29 11.02 28.84 0.32 -1.97 16 7 S 0.06 0.85 23.23 -107.50 -2.50 -1.65 16 8 C -0.13 -2.11 6.48 -38.42 -0.25 -2.36 16 9 C -0.08 -1.42 9.33 -39.26 -0.37 -1.79 16 10 C -0.07 -1.33 5.06 -104.68 -0.53 -1.86 16 11 C 0.14 2.90 2.64 -27.89 -0.07 2.83 16 12 H 0.10 2.10 6.14 -51.93 -0.32 1.78 16 13 O -0.56 -11.27 12.74 -35.23 -0.45 -11.72 16 14 C 0.00 0.10 4.64 -27.88 -0.13 -0.03 16 15 C -0.51 -14.16 8.88 -34.44 -0.31 -14.46 16 16 H 0.06 1.66 7.74 -52.48 -0.41 1.26 16 17 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 18 N -0.90 -26.47 13.29 55.43 0.74 -25.73 16 19 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 20 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 21 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 23 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 24 H 0.08 1.17 6.00 -51.93 -0.31 0.86 16 25 H 0.06 0.73 8.07 -51.93 -0.42 0.31 16 26 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 27 H 0.14 1.33 8.06 -52.48 -0.42 0.90 16 28 H 0.16 1.33 8.06 -52.49 -0.42 0.91 16 29 H 0.13 1.97 6.37 -52.49 -0.33 1.63 16 30 H 0.36 6.36 7.31 45.56 0.33 6.70 16 31 H 0.03 0.75 7.92 -51.93 -0.41 0.34 16 32 H 0.02 0.53 8.14 -51.92 -0.42 0.10 16 33 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 293.24 15.07 4.42 4.42 Total: -1.00 -30.96 293.24 -9.06 -40.02 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -3.12 Total: 4.84 kcal Atomic # 6 Polarization: -23.56 SS G_CDS: -3.13 Total: -26.69 kcal Atomic # 7 Polarization: -26.47 SS G_CDS: 0.74 Total: -25.73 kcal Atomic # 8 Polarization: -11.27 SS G_CDS: -0.45 Total: -11.72 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 16 Polarization: 0.85 SS G_CDS: -2.50 Total: -1.65 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -30.96 -9.06 -40.02 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259465450.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.753 kcal (2) G-P(sol) polarization free energy of solvation -30.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds