Wall clock time and date at job start Mon Mar 30 2020 06:42:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.36137 * 119.70461 * 2 1 4 4 C 1.41130 * 120.45714 * 180.02562 * 3 2 1 5 5 C 1.45387 * 129.34709 * 179.97438 * 4 3 2 6 6 C 1.31824 * 114.89601 * 180.02562 * 5 4 3 7 7 S 1.75295 * 111.40741 * 0.02562 * 6 5 4 8 8 C 1.39779 * 118.83217 * 359.97438 * 4 3 2 9 9 C 1.39816 * 119.75573 * 359.97438 * 8 4 3 10 10 C 1.37505 * 120.17727 * 0.03876 * 9 8 4 11 11 C 1.50693 * 119.90813 * 179.97438 * 10 9 8 12 12 H 1.09004 * 109.47458 * 145.02487 * 11 10 9 13 13 O 1.42901 * 109.47474 * 25.01821 * 11 10 9 14 14 C 1.53002 * 109.46943 * 265.01827 * 11 10 9 15 15 C 1.50699 * 109.47519 * 184.99713 * 14 11 10 16 16 H 1.08006 * 119.99513 * 0.02562 * 15 14 11 17 17 C 1.37877 * 120.00610 * 180.02562 * 15 14 11 18 18 N 1.31516 * 119.99520 * 0.02562 * 17 15 14 19 19 Si 1.86791 * 120.00509 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.46997 * 59.99936 * 19 17 15 21 21 H 1.48494 * 109.47334 * 180.02562 * 19 17 15 22 22 H 1.48508 * 109.47300 * 300.00515 * 19 17 15 23 23 H 1.09001 * 109.46623 * 90.00706 * 1 2 3 24 24 H 1.08999 * 109.46868 * 210.00081 * 1 2 3 25 25 H 1.09000 * 109.47063 * 330.00515 * 1 2 3 26 26 H 1.07997 * 119.77063 * 359.97438 * 3 2 1 27 27 H 1.08004 * 122.55666 * 0.02562 * 5 4 3 28 28 H 1.07998 * 124.29414 * 179.73244 * 6 5 4 29 29 H 1.07995 * 119.91475 * 180.02562 * 9 8 4 30 30 H 0.96699 * 113.99601 * 300.00557 * 13 11 10 31 31 H 1.09002 * 109.47451 * 305.00250 * 14 11 10 32 32 H 1.09010 * 109.46909 * 65.00106 * 14 11 10 33 33 H 0.97004 * 120.00086 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1816 1.1825 0.0000 4 6 3.5928 1.2010 -0.0005 5 6 4.4997 2.3373 -0.0011 6 6 5.7804 2.0252 -0.0021 7 16 6.0156 0.2880 -0.0031 8 6 4.2829 -0.0145 -0.0005 9 6 3.5699 -1.2173 0.0006 10 6 2.1949 -1.2057 0.0008 11 6 1.4326 -2.5056 0.0014 12 1 0.5224 -2.3928 0.5906 13 8 2.2447 -3.5339 0.5714 14 6 1.0663 -2.8826 -1.4355 15 6 0.2000 -4.1156 -1.4261 16 1 -0.0634 -4.5834 -0.4889 17 6 -0.2564 -4.6467 -2.6138 18 7 0.0647 -4.0774 -3.7550 19 14 -1.3308 -6.1747 -2.6021 20 1 -2.5704 -5.9023 -1.8311 21 1 -1.6852 -6.5414 -3.9967 22 1 -0.5905 -7.2956 -1.9689 23 1 -0.3632 -0.0001 -1.0277 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5138 26 1 1.6331 2.1128 -0.0004 27 1 4.1508 3.3594 -0.0008 28 1 6.5829 2.7479 -0.0068 29 1 4.1005 -2.1579 0.0010 30 1 3.0730 -3.6891 0.0971 31 1 0.5223 -2.0599 -1.8996 32 1 1.9760 -3.0820 -2.0020 33 1 -0.2567 -4.4507 -4.5907 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259465450.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:55 Heat of formation + Delta-G solvation = -39.903654 kcal Electronic energy + Delta-G solvation = -16936.375112 eV Core-core repulsion = 14244.909725 eV Total energy + Delta-G solvation = -2691.465387 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.06219 -38.47803 -36.19459 -35.01639 -33.14455 -32.04120 -30.15100 -28.03227 -26.56036 -24.16395 -23.61782 -22.30489 -20.72100 -19.27918 -18.36351 -17.58992 -16.95614 -16.45314 -16.15735 -15.61816 -15.30258 -15.06328 -14.57913 -14.55641 -14.29724 -13.91348 -13.79633 -13.12586 -13.09328 -12.98470 -12.81283 -12.48502 -12.29008 -12.15790 -12.09681 -11.65576 -11.56100 -11.19825 -10.72584 -10.57777 -10.52717 -9.28297 -8.61959 -8.19483 -6.29529 -0.23479 0.24647 0.57803 1.07886 1.34461 1.40962 1.43313 1.51448 2.41472 2.67128 3.13201 3.60639 3.64649 3.75603 3.81301 4.13041 4.24320 4.39866 4.50727 4.67924 4.74575 4.78344 4.83921 4.86647 4.96261 5.02026 5.19767 5.27899 5.40626 5.47660 5.52080 5.73261 5.77544 5.90273 6.20648 6.80085 6.87267 7.38800 8.91451 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.031786 B = 0.004909 C = 0.004652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.678699 B = 5702.420915 C = 6017.054198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.085 4.085 3 C -0.082 4.082 4 C -0.095 4.095 5 C -0.122 4.122 6 C -0.185 4.185 7 S 0.067 5.933 8 C -0.161 4.161 9 C -0.094 4.094 10 C -0.101 4.101 11 C 0.157 3.843 12 H 0.102 0.898 13 O -0.564 6.564 14 C 0.015 3.985 15 C -0.530 4.530 16 H 0.058 0.942 17 C 0.004 3.996 18 N -0.932 5.932 19 Si 0.961 3.039 20 H -0.266 1.266 21 H -0.283 1.283 22 H -0.271 1.271 23 H 0.066 0.934 24 H 0.064 0.936 25 H 0.095 0.905 26 H 0.157 0.843 27 H 0.175 0.825 28 H 0.201 0.799 29 H 0.127 0.873 30 H 0.374 0.626 31 H 0.009 0.991 32 H -0.008 1.008 33 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.517 13.935 8.003 18.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.087 4.087 3 C -0.102 4.102 4 C -0.103 4.103 5 C -0.151 4.151 6 C -0.319 4.319 7 S 0.329 5.671 8 C -0.276 4.276 9 C -0.116 4.116 10 C -0.104 4.104 11 C 0.098 3.902 12 H 0.119 0.881 13 O -0.371 6.371 14 C -0.022 4.022 15 C -0.568 4.568 16 H 0.076 0.924 17 C -0.194 4.194 18 N -0.572 5.572 19 Si 0.786 3.214 20 H -0.191 1.191 21 H -0.209 1.209 22 H -0.196 1.196 23 H 0.085 0.915 24 H 0.083 0.917 25 H 0.114 0.886 26 H 0.174 0.826 27 H 0.192 0.808 28 H 0.218 0.782 29 H 0.144 0.856 30 H 0.223 0.777 31 H 0.028 0.972 32 H 0.010 0.990 33 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 9.348 13.044 8.244 18.042 hybrid contribution -1.215 -0.194 -0.898 1.523 sum 8.133 12.851 7.346 16.889 Atomic orbital electron populations 1.20896 0.89768 1.03786 1.02744 1.19524 0.97406 0.92124 0.99654 1.20807 0.91609 0.98353 0.99396 1.19729 0.94735 0.92089 1.03746 1.21187 0.91547 0.99389 1.03018 1.25417 1.01114 0.97958 1.07371 1.84033 1.00715 1.02869 1.79466 1.22815 0.98393 0.97233 1.09124 1.20236 0.93212 0.96386 1.01768 1.20645 0.93986 0.96599 0.99151 1.20900 0.91709 0.82075 0.95475 0.88098 1.86481 1.36009 1.57803 1.56794 1.19530 0.95491 0.95923 0.91280 1.21453 1.30848 1.11698 0.92752 0.92421 1.25877 0.97838 1.00528 0.95136 1.70087 1.46896 1.42182 0.98075 0.85554 0.79288 0.79439 0.77093 1.19065 1.20865 1.19625 0.91544 0.91742 0.88630 0.82579 0.80761 0.78174 0.85559 0.77713 0.97225 0.98975 0.92816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.39 9.36 71.24 0.67 -2.72 16 2 C -0.08 -2.79 5.83 -20.22 -0.12 -2.90 16 3 C -0.08 -2.29 9.66 22.49 0.22 -2.07 16 4 C -0.09 -2.68 6.04 -20.36 -0.12 -2.80 16 5 C -0.12 -2.52 10.39 23.33 0.24 -2.28 16 6 C -0.19 -3.51 11.02 67.04 0.74 -2.77 16 7 S 0.07 1.64 23.23 -56.49 -1.31 0.33 16 8 C -0.16 -5.05 6.48 23.02 0.15 -4.90 16 9 C -0.09 -3.29 9.33 22.48 0.21 -3.08 16 10 C -0.10 -3.77 5.06 -19.90 -0.10 -3.87 16 11 C 0.16 6.70 2.64 29.85 0.08 6.78 16 12 H 0.10 4.28 6.14 -2.38 -0.01 4.26 16 13 O -0.56 -23.71 12.74 -148.98 -1.90 -25.61 16 14 C 0.02 0.78 4.64 29.85 0.14 0.92 16 15 C -0.53 -30.04 8.88 25.60 0.23 -29.81 16 16 H 0.06 3.23 7.74 -2.91 -0.02 3.21 16 17 C 0.00 0.23 5.46 84.65 0.46 0.69 16 18 N -0.93 -56.36 13.29 21.45 0.28 -56.08 16 19 Si 0.96 44.55 29.54 68.60 2.03 46.58 16 20 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 21 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 22 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 23 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 24 H 0.06 2.02 6.00 -2.39 -0.01 2.00 16 25 H 0.09 2.08 8.07 -2.39 -0.02 2.06 16 26 H 0.16 3.20 8.06 -2.91 -0.02 3.18 16 27 H 0.18 2.41 8.06 -2.91 -0.02 2.39 16 28 H 0.20 2.24 8.06 -2.91 -0.02 2.21 16 29 H 0.13 4.16 6.37 -2.91 -0.02 4.15 16 30 H 0.37 13.72 7.31 -74.06 -0.54 13.18 16 31 H 0.01 0.52 7.92 -2.39 -0.02 0.50 16 32 H -0.01 -0.46 8.14 -2.38 -0.02 -0.48 16 33 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 Total: -1.00 -67.81 293.24 2.48 -65.33 By element: Atomic # 1 Polarization: 17.69 SS G_CDS: 0.59 Total: 18.28 kcal Atomic # 6 Polarization: -51.62 SS G_CDS: 2.79 Total: -48.83 kcal Atomic # 7 Polarization: -56.36 SS G_CDS: 0.28 Total: -56.08 kcal Atomic # 8 Polarization: -23.71 SS G_CDS: -1.90 Total: -25.61 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Atomic # 16 Polarization: 1.64 SS G_CDS: -1.31 Total: 0.33 kcal Total: -67.81 2.48 -65.33 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259465450.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.426 kcal (2) G-P(sol) polarization free energy of solvation -67.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds