Wall clock time and date at job start Mon Mar 30 2020 06:42:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.36137 * 119.70461 * 2 1 4 4 C 1.41130 * 120.45714 * 180.02562 * 3 2 1 5 5 C 1.45387 * 129.34709 * 179.97438 * 4 3 2 6 6 C 1.31824 * 114.89601 * 180.02562 * 5 4 3 7 7 S 1.75295 * 111.40741 * 0.02562 * 6 5 4 8 8 C 1.39779 * 118.83217 * 359.97438 * 4 3 2 9 9 C 1.39817 * 119.75563 * 0.02562 * 8 4 3 10 10 C 1.37503 * 120.17333 * 359.97438 * 9 8 4 11 11 C 1.50703 * 119.90305 * 180.02562 * 10 9 8 12 12 H 1.08999 * 109.47291 * 214.97757 * 11 10 9 13 13 O 1.42895 * 109.47242 * 334.98208 * 11 10 9 14 14 C 1.53011 * 109.47208 * 94.98071 * 11 10 9 15 15 C 1.50697 * 109.47396 * 175.00099 * 14 11 10 16 16 H 1.08002 * 119.99519 * 359.97438 * 15 14 11 17 17 C 1.37873 * 119.99902 * 179.97438 * 15 14 11 18 18 N 1.31509 * 120.00178 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99909 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.47125 * 59.99699 * 19 17 15 21 21 H 1.48498 * 109.47372 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.46955 * 300.00321 * 19 17 15 23 23 H 1.09001 * 109.46623 * 90.00706 * 1 2 3 24 24 H 1.08999 * 109.46868 * 210.00081 * 1 2 3 25 25 H 1.09000 * 109.47063 * 330.00515 * 1 2 3 26 26 H 1.07997 * 119.77063 * 359.97438 * 3 2 1 27 27 H 1.08004 * 122.55666 * 0.02562 * 5 4 3 28 28 H 1.07998 * 124.29414 * 179.73244 * 6 5 4 29 29 H 1.07996 * 119.91511 * 179.97438 * 9 8 4 30 30 H 0.96694 * 114.00390 * 60.00159 * 13 11 10 31 31 H 1.09004 * 109.46782 * 295.00060 * 14 11 10 32 32 H 1.09001 * 109.46943 * 54.99233 * 14 11 10 33 33 H 0.97003 * 120.00205 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1816 1.1825 0.0000 4 6 3.5928 1.2010 -0.0005 5 6 4.4997 2.3373 -0.0011 6 6 5.7804 2.0252 -0.0021 7 16 6.0156 0.2880 -0.0031 8 6 4.2829 -0.0145 -0.0005 9 6 3.5699 -1.2173 -0.0005 10 6 2.1949 -1.2056 0.0000 11 6 1.4325 -2.5056 0.0006 12 1 0.5222 -2.3932 -0.5882 13 8 2.2444 -3.5342 -0.5692 14 6 1.0670 -2.8819 1.4379 15 6 0.2007 -4.1149 1.4296 16 1 -0.0631 -4.5831 0.4928 17 6 -0.2549 -4.6453 2.6179 18 7 0.0668 -4.0754 3.7586 19 14 -1.3294 -6.1734 2.6076 20 1 -0.5894 -7.2945 1.9747 21 1 -1.6840 -6.5386 4.0026 22 1 -2.5694 -5.9013 1.8371 23 1 -0.3632 -0.0001 -1.0277 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5138 26 1 1.6331 2.1128 -0.0004 27 1 4.1508 3.3594 -0.0008 28 1 6.5829 2.7479 -0.0068 29 1 4.1005 -2.1579 -0.0009 30 1 3.0730 -3.6892 -0.0954 31 1 1.9771 -3.0810 2.0040 32 1 0.5234 -2.0589 1.9019 33 1 -0.2534 -4.4487 4.5947 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259465452.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:57 Heat of formation + Delta-G solvation = -40.809287 kcal Electronic energy + Delta-G solvation = -16937.942171 eV Core-core repulsion = 14246.437512 eV Total energy + Delta-G solvation = -2691.504659 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.06347 -38.48177 -36.19283 -35.02424 -33.14241 -32.05125 -30.13487 -28.03835 -26.55502 -24.14096 -23.62675 -22.29311 -20.73275 -19.26872 -18.37028 -17.57931 -16.95544 -16.45606 -16.15466 -15.61513 -15.30847 -15.04953 -14.57807 -14.54778 -14.29627 -13.87103 -13.79752 -13.19970 -13.04771 -12.94637 -12.81504 -12.47021 -12.36438 -12.15714 -12.08914 -11.64621 -11.56537 -11.20162 -10.72335 -10.57832 -10.52911 -9.27313 -8.62115 -8.19539 -6.29683 -0.23542 0.24910 0.57850 1.07883 1.34310 1.41029 1.43323 1.51493 2.41416 2.66435 3.13164 3.61690 3.65202 3.75904 3.81377 4.15051 4.27772 4.40819 4.51305 4.65897 4.71704 4.77702 4.82800 4.87948 4.96409 5.02605 5.19851 5.28119 5.42334 5.47858 5.54576 5.71050 5.77737 5.90242 6.20502 6.80173 6.87219 7.38726 8.91363 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.031793 B = 0.004909 C = 0.004652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.498440 B = 5702.969048 C = 6017.633094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.084 4.084 3 C -0.083 4.083 4 C -0.095 4.095 5 C -0.122 4.122 6 C -0.186 4.186 7 S 0.067 5.933 8 C -0.161 4.161 9 C -0.094 4.094 10 C -0.101 4.101 11 C 0.159 3.841 12 H 0.099 0.901 13 O -0.564 6.564 14 C 0.014 3.986 15 C -0.530 4.530 16 H 0.058 0.942 17 C 0.004 3.996 18 N -0.932 5.932 19 Si 0.961 3.039 20 H -0.271 1.271 21 H -0.283 1.283 22 H -0.266 1.266 23 H 0.087 0.913 24 H 0.057 0.943 25 H 0.086 0.914 26 H 0.156 0.844 27 H 0.175 0.825 28 H 0.201 0.799 29 H 0.127 0.873 30 H 0.375 0.625 31 H -0.008 1.008 32 H 0.011 0.989 33 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.516 13.901 -8.016 18.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.086 4.086 3 C -0.102 4.102 4 C -0.103 4.103 5 C -0.152 4.152 6 C -0.319 4.319 7 S 0.329 5.671 8 C -0.276 4.276 9 C -0.116 4.116 10 C -0.104 4.104 11 C 0.100 3.900 12 H 0.117 0.883 13 O -0.371 6.371 14 C -0.023 4.023 15 C -0.568 4.568 16 H 0.076 0.924 17 C -0.194 4.194 18 N -0.572 5.572 19 Si 0.786 3.214 20 H -0.196 1.196 21 H -0.209 1.209 22 H -0.191 1.191 23 H 0.105 0.895 24 H 0.076 0.924 25 H 0.105 0.895 26 H 0.174 0.826 27 H 0.192 0.808 28 H 0.218 0.782 29 H 0.144 0.856 30 H 0.223 0.777 31 H 0.011 0.989 32 H 0.029 0.971 33 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 9.345 13.010 -8.260 18.023 hybrid contribution -1.215 -0.182 0.877 1.509 sum 8.130 12.828 -7.384 16.887 Atomic orbital electron populations 1.20948 0.89788 1.03658 1.03360 1.19528 0.97421 0.92104 0.99577 1.20806 0.91608 0.98353 0.99459 1.19730 0.94733 0.92090 1.03738 1.21186 0.91552 0.99388 1.03027 1.25417 1.01110 0.97964 1.07373 1.84030 1.00717 1.02860 1.79448 1.22814 0.98391 0.97232 1.09148 1.20238 0.93219 0.96386 1.01773 1.20657 0.93982 0.96579 0.99148 1.20837 0.91661 0.82065 0.95408 0.88320 1.86475 1.35999 1.57763 1.56828 1.19562 0.95526 0.95946 0.91298 1.21450 1.30863 1.11719 0.92755 0.92417 1.25874 0.97825 1.00520 0.95134 1.70083 1.46905 1.42158 0.98078 0.85556 0.79287 0.79447 0.77094 1.19613 1.20859 1.19077 0.89488 0.92444 0.89473 0.82620 0.80773 0.78174 0.85552 0.77695 0.98936 0.97102 0.92802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.55 9.19 71.24 0.65 -2.90 16 2 C -0.08 -2.76 5.83 -20.22 -0.12 -2.88 16 3 C -0.08 -2.31 9.66 22.49 0.22 -2.09 16 4 C -0.09 -2.68 6.04 -20.36 -0.12 -2.81 16 5 C -0.12 -2.53 10.39 23.33 0.24 -2.29 16 6 C -0.19 -3.51 11.02 67.04 0.74 -2.78 16 7 S 0.07 1.65 23.23 -56.49 -1.31 0.34 16 8 C -0.16 -5.06 6.48 23.03 0.15 -4.91 16 9 C -0.09 -3.30 9.33 22.48 0.21 -3.09 16 10 C -0.10 -3.77 5.06 -19.90 -0.10 -3.87 16 11 C 0.16 6.79 2.45 29.85 0.07 6.87 16 12 H 0.10 4.19 6.97 -2.39 -0.02 4.18 16 13 O -0.56 -23.70 12.74 -148.98 -1.90 -25.60 16 14 C 0.01 0.72 4.38 29.85 0.13 0.85 16 15 C -0.53 -30.05 8.88 25.60 0.23 -29.82 16 16 H 0.06 3.24 7.74 -2.91 -0.02 3.21 16 17 C 0.00 0.25 5.46 84.65 0.46 0.71 16 18 N -0.93 -56.33 13.29 21.44 0.28 -56.05 16 19 Si 0.96 44.53 29.54 68.60 2.03 46.56 16 20 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 21 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 22 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 23 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 24 H 0.06 2.04 5.45 -2.39 -0.01 2.03 16 25 H 0.09 2.11 8.07 -2.39 -0.02 2.09 16 26 H 0.16 3.21 8.06 -2.91 -0.02 3.19 16 27 H 0.18 2.42 8.06 -2.91 -0.02 2.39 16 28 H 0.20 2.24 8.06 -2.91 -0.02 2.21 16 29 H 0.13 4.16 6.37 -2.91 -0.02 4.15 16 30 H 0.37 13.72 7.31 -74.06 -0.54 13.18 16 31 H -0.01 -0.44 8.14 -2.38 -0.02 -0.46 16 32 H 0.01 0.59 7.02 -2.39 -0.02 0.58 16 33 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 Total: -1.00 -67.75 292.00 2.46 -65.29 By element: Atomic # 1 Polarization: 17.87 SS G_CDS: 0.59 Total: 18.47 kcal Atomic # 6 Polarization: -51.76 SS G_CDS: 2.76 Total: -49.00 kcal Atomic # 7 Polarization: -56.33 SS G_CDS: 0.28 Total: -56.05 kcal Atomic # 8 Polarization: -23.70 SS G_CDS: -1.90 Total: -25.60 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Atomic # 16 Polarization: 1.65 SS G_CDS: -1.31 Total: 0.34 kcal Total: -67.75 2.46 -65.29 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259465452.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.478 kcal (2) G-P(sol) polarization free energy of solvation -67.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds